From a0f502aa6bde3782a178de89755fdbbf945eefa2 Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Thu, 14 Apr 2022 14:34:40 -0500 Subject: [PATCH 01/26] keep Kopeikin corrections in ECL coordinates. Note that it is not smart enough to keep in ICRS if the model is ICRS (yet) but that is the eventual goal --- src/pint/models/binary_ddk.py | 46 ++++++------- src/pint/models/pulsar_binary.py | 5 +- .../stand_alone_psr_binaries/DDK_model.py | 65 ++++++++++--------- 3 files changed, 61 insertions(+), 55 deletions(-) diff --git a/src/pint/models/binary_ddk.py b/src/pint/models/binary_ddk.py index e78aca1ed..9438d4bad 100644 --- a/src/pint/models/binary_ddk.py +++ b/src/pint/models/binary_ddk.py @@ -73,29 +73,29 @@ def __init__(self,): ) ) self.remove_param("SINI") - self.internal_params += ["PMRA_DDK", "PMDEC_DDK"] - - @property - def PMRA_DDK(self): - params = self._parent.get_params_as_ICRS() - par_obj = floatParameter( - name="PMRA", - units="mas/year", - value=params["PMRA"], - description="Proper motion in RA", - ) - return par_obj - - @property - def PMDEC_DDK(self): - params = self._parent.get_params_as_ICRS() - par_obj = floatParameter( - name="PMDEC", - units="mas/year", - value=params["PMDEC"], - description="Proper motion in DEC", - ) - return par_obj + #self.internal_params += ["PMRA_DDK", "PMDEC_DDK"] + + # @property + # def PMRA_DDK(self): + # params = self._parent.get_params_as_ICRS() + # par_obj = floatParameter( + # name="PMRA", + # units="mas/year", + # value=params["PMRA"], + # description="Proper motion in RA", + # ) + # return par_obj + + # @property + # def PMDEC_DDK(self): + # params = self._parent.get_params_as_ICRS() + # par_obj = floatParameter( + # name="PMDEC", + # units="mas/year", + # value=params["PMDEC"], + # description="Proper motion in DEC", + # ) + # return par_obj def validate(self): """Validate parameters.""" diff --git a/src/pint/models/pulsar_binary.py b/src/pint/models/pulsar_binary.py index 422586427..83f5a4ae5 100644 --- a/src/pint/models/pulsar_binary.py +++ b/src/pint/models/pulsar_binary.py @@ -294,7 +294,10 @@ def update_binary_object(self, toas, acc_delay=None): self.barycentric_time = tbl["tdbld"] * u.day - acc_delay updates["barycentric_toa"] = self.barycentric_time updates["obs_pos"] = tbl["ssb_obs_pos"].quantity - updates["psr_pos"] = self._parent.ssb_to_psb_xyz_ICRS( + #updates["psr_pos"] = self._parent.ssb_to_psb_xyz_ICRS( + # epoch=tbl["tdbld"].astype(np.float64) + #) + updates["psr_pos"] = self._parent.ssb_to_psb_xyz_ECL( epoch=tbl["tdbld"].astype(np.float64) ) for par in self.binary_instance.binary_params: diff --git a/src/pint/models/stand_alone_psr_binaries/DDK_model.py b/src/pint/models/stand_alone_psr_binaries/DDK_model.py index a197aa9d3..2e0a44cf3 100644 --- a/src/pint/models/stand_alone_psr_binaries/DDK_model.py +++ b/src/pint/models/stand_alone_psr_binaries/DDK_model.py @@ -33,8 +33,8 @@ def __init__(self, t=None, input_params=None): self.param_default_value.update( { "KIN": 0 * u.deg, - "PMRA_DDK": 0 * u.mas / u.year, - "PMDEC_DDK": 0.5 * u.mas / u.year, + "PMELONG": 0 * u.mas / u.year, + "PMELAT": 0.5 * u.mas / u.year, "PX": 0 * u.mas, "KOM": 0 * u.deg, "K96": True, @@ -76,26 +76,29 @@ def psr_pos(self, val): (Kopeikin 1995 L6 Eq10) """ self._psr_pos = val - self._sin_delta = self._psr_pos[:, 2] - self._cos_delta = np.cos(np.arcsin(self._sin_delta)) - self._sin_alpha = self._psr_pos[:, 1] / self._cos_delta - self._cos_alpha = self._psr_pos[:, 0] / self._cos_delta + # it appears that this is the vector K0 + # K0 = (cos(alpha)*cos(delta), sin(alpha)*cos(delta), sin(delta)) + # in equatorial coords + self._sin_elat = self._psr_pos[:, 2] + self._cos_elat = np.cos(np.arcsin(self._sin_elat)) + self._sin_elong = self._psr_pos[:, 1] / self._cos_elat + self._cos_elong = self._psr_pos[:, 0] / self._cos_elat @property - def sin_delta(self): - return self._sin_delta + def sin_elat(self): + return self._sin_elat @property - def cos_delta(self): - return self._cos_delta + def cos_elat(self): + return self._cos_elat @property - def sin_alpha(self): - return self._sin_alpha + def sin_elong(self): + return self._sin_elong @property - def cos_alpha(self): - return self._cos_alpha + def cos_elong(self): + return self._cos_elong @property def SINI(self): @@ -125,7 +128,7 @@ def delta_kin_proper_motion(self): d_KIN = (-PMRA_DDK * sin(KOM) + PMDEC_DDK * cos(KOM)) * (t-T0) """ d_KIN = ( - -self.PMRA_DDK * self.sin_KOM + self.PMDEC_DDK * self.cos_KOM + -self.PMELONG * self.sin_KOM + self.PMELAT * self.cos_KOM ) * self.tt0 return d_KIN.to(self.KIN.unit) @@ -142,7 +145,7 @@ def d_SINI_d_KIN(self): def d_SINI_d_KOM(self): if self.K96: d_si_d_kom = ( - (-self.PMRA_DDK * self.cos_KOM - self.PMDEC_DDK * self.sin_KOM) + (-self.PMELONG * self.cos_KOM - self.PMELAT * self.sin_KOM) * self.tt0 * np.cos(self.kin()) ) @@ -154,7 +157,7 @@ def d_SINI_d_KOM(self): def d_SINI_d_T0(self): if self.K96: d_si_d_kom = -( - -self.PMRA_DDK * self.sin_KOM + self.PMDEC_DDK * self.cos_KOM + -self.PMELONG * self.sin_KOM + self.PMELAT * self.cos_KOM ) return d_si_d_kom.to(u.Unit("") / self.T0.unit) else: @@ -170,7 +173,7 @@ def d_SINI_d_par(self, par): def d_kin_proper_motion_d_KOM(self): d_DKIN_d_KOM = ( - -self.PMRA_DDK * self.cos_KOM - self.PMDEC_DDK * self.sin_KOM + -self.PMELONG * self.cos_KOM - self.PMELAT * self.sin_KOM ) * self.tt0 return d_DKIN_d_KOM.to( self.KIN.unit / self.KOM.unit, equivalencies=u.dimensionless_angles() @@ -178,7 +181,7 @@ def d_kin_proper_motion_d_KOM(self): def d_kin_proper_motion_d_T0(self): d_DKIN_d_T0 = -1 * ( - -self.PMRA_DDK * self.sin_KOM + self.PMDEC_DDK * self.cos_KOM + -self.PMELONG * self.sin_KOM + self.PMELAT * self.cos_KOM ) return d_DKIN_d_T0.to( self.KIN.unit / self.T0.unit, equivalencies=u.dimensionless_angles() @@ -201,8 +204,8 @@ def delta_a1_proper_motion(self): """The correction on a1 (projected semi-major axis) due to the pulsar proper motion (KOPEIKIN. 1996 Eq 8.) - d_x = a1 * cot(kin) * (-PMRA_DDK * sin(KOM) + PMDEC_DDK * cos(KOM)) * (t-T0) - d_kin = (-PMRA_DDK * sin(KOM) + PMDEC_DDK * cos(KOM)) * (t-T0) + d_x = a1 * cot(kin) * (-PMELONG * sin(KOM) + PMDEC_DDK * cos(KOM)) * (t-T0) + d_kin = (-PMELONG * sin(KOM) + PMDEC_DDK * cos(KOM)) * (t-T0) d_x = a1 * d_kin * cot(kin) """ a1 = self.a1_k(False, False) @@ -253,14 +256,14 @@ def delta_omega_proper_motion(self): """The correction on omega (Longitude of periastron) due to the pulsar proper motion (KOPEIKIN. 1996 Eq 9.) - d_omega = csc(i) * (PMRA_DDK * cos(KOM) + PMDEC_DDK * sin(KOM)) * (t-T0) + d_omega = csc(i) * (PMELONG * cos(KOM) + PMDEC_DDK * sin(KOM)) * (t-T0) """ kin = self.kin() sin_kin = np.sin(kin) omega_dot = ( 1.0 / sin_kin - * (self.PMRA_DDK * self.cos_KOM + self.PMDEC_DDK * self.sin_KOM) + * (self.PMELONG * self.cos_KOM + self.PMELAT * self.sin_KOM) ) return (omega_dot * self.tt0).to(self.OM.unit) @@ -271,7 +274,7 @@ def d_delta_omega_proper_motion_d_KIN(self): d_omega_dot = ( -cos_kin / sin_kin ** 2 - * (self.PMRA_DDK * self.cos_KOM + self.PMDEC_DDK * self.sin_KOM) + * (self.PMELONG * self.cos_KOM + self.PMELAT * self.sin_KOM) ) return (d_omega_dot * self.tt0).to( self.OM.unit / self.KIN.unit, equivalencies=u.dimensionless_angles() @@ -286,8 +289,8 @@ def d_delta_omega_proper_motion_d_KOM(self): -cos_kin / sin_kin ** 2 * d_kin_d_KOM - * (self.PMRA_DDK * self.cos_KOM + self.PMDEC_DDK * self.sin_KOM) - + (-self.PMRA_DDK * self.sin_KOM + self.PMDEC_DDK * self.cos_KOM) / sin_kin + * (self.PMELONG * self.cos_KOM + self.PMELAT * self.sin_KOM) + + (-self.PMELONG * self.sin_KOM + self.PMELAT * self.cos_KOM) / sin_kin ) return (d_omega_dot * self.tt0).to( self.OM.unit / self.KOM.unit, equivalencies=u.dimensionless_angles() @@ -301,7 +304,7 @@ def d_delta_omega_proper_motion_d_T0(self): # with u.set_enabled_equivalencies(u.dimensionless_angles()): d_omega_d_T0 = ( -cos_kin / sin_kin ** 2 * d_kin_d_T0 * self.tt0 - 1.0 / sin_kin - ) * (self.PMRA_DDK * self.cos_KOM + self.PMDEC_DDK * self.sin_KOM) + ) * (self.PMELONG * self.cos_KOM + self.PMELAT * self.sin_KOM) return d_omega_d_T0.to(self.OM.unit / self.T0.unit) # The code below is to implement the binary model parameter correction due @@ -313,7 +316,7 @@ def delta_I0(self): Refernce: (Kopeikin 1995 Eq 15) """ return ( - -self.obs_pos[:, 0] * self.sin_alpha + self.obs_pos[:, 1] * self.cos_alpha + -self.obs_pos[:, 0] * self.sin_elong + self.obs_pos[:, 1] * self.cos_elong ) def delta_J0(self): @@ -321,9 +324,9 @@ def delta_J0(self): Reference: (Kopeikin 1995 Eq 16) """ return ( - -self.obs_pos[:, 0] * self.sin_delta * self.cos_alpha - - self.obs_pos[:, 1] * self.sin_delta * self.sin_alpha - + self.obs_pos[:, 2] * self.cos_delta + -self.obs_pos[:, 0] * self.sin_elat * self.cos_elong + - self.obs_pos[:, 1] * self.sin_elat * self.sin_elong + + self.obs_pos[:, 2] * self.cos_elat ) def delta_sini_parallax(self): From ab62afc178718492b1e13c91202ae42743381f76 Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Thu, 14 Apr 2022 19:15:54 -0500 Subject: [PATCH 02/26] trying to handle both coordinates --- src/pint/models/binary_ddk.py | 52 ++++----- src/pint/models/pulsar_binary.py | 14 +-- .../stand_alone_psr_binaries/DDK_model.py | 100 ++++++++++-------- 3 files changed, 87 insertions(+), 79 deletions(-) diff --git a/src/pint/models/binary_ddk.py b/src/pint/models/binary_ddk.py index 9438d4bad..da6f20031 100644 --- a/src/pint/models/binary_ddk.py +++ b/src/pint/models/binary_ddk.py @@ -31,9 +31,7 @@ class BinaryDDK(BinaryDD): Note ---- - This model defines KOM with reference to celestial north regardless of the astrometry - model. This is incompatible with tempo2, which defines KOM with reference to ecliptic - north when using ecliptic coordinates. + This model defines KOM with reference to north, either equatorial or ecliptic depending on how the model is defined Parameters supported: @@ -73,35 +71,31 @@ def __init__(self,): ) ) self.remove_param("SINI") - #self.internal_params += ["PMRA_DDK", "PMDEC_DDK"] - - # @property - # def PMRA_DDK(self): - # params = self._parent.get_params_as_ICRS() - # par_obj = floatParameter( - # name="PMRA", - # units="mas/year", - # value=params["PMRA"], - # description="Proper motion in RA", - # ) - # return par_obj - - # @property - # def PMDEC_DDK(self): - # params = self._parent.get_params_as_ICRS() - # par_obj = floatParameter( - # name="PMDEC", - # units="mas/year", - # value=params["PMDEC"], - # description="Proper motion in DEC", - # ) - # return par_obj + self.internal_params += ["PMLONG_DDK", "PMLAT_DDK"] + + @property + def PMLONG_DDK(self): + if "AstrometryEquatorial" in self.components: + return self.PMRA + elif "AstrometryEcliptic" in self.components: + return self.PMELONG + + @property + def PMLAT_DDK(self): + if "AstrometryEquatorial" in self.components: + return self.PMDEC + elif "AstrometryEcliptic" in self.components: + return self.PMELAT def validate(self): """Validate parameters.""" super().validate() - if "PMRA" not in self._parent.params or "PMDEC" not in self._parent.params: - # Check ecliptic coordinates proper motion. + if "AstrometryEquatorial" in self.components: + if "PMRA" not in self._parent.params or "PMDEC" not in self._parent.params: + raise MissingParameter( + "DDK", "DDK model needs proper motion parameters." + ) + elif "AstrometryEcliptic" in self.components: if ( "PMELONG" not in self._parent.params or "PMELAT" not in self._parent.params @@ -117,8 +111,6 @@ def validate(self): raise MissingParameter( "Binary_DDK", "PX", "DDK model needs PX from" "Astrometry." ) - # Should we warn if the model is using ecliptic coordinates? - # Should we support KOM_PINT that works this way and KOM that works the way tempo2 does? def alternative_solutions(self): """Alternative Kopeikin solutions (potential local minima) diff --git a/src/pint/models/pulsar_binary.py b/src/pint/models/pulsar_binary.py index 83f5a4ae5..45b2de372 100644 --- a/src/pint/models/pulsar_binary.py +++ b/src/pint/models/pulsar_binary.py @@ -294,12 +294,14 @@ def update_binary_object(self, toas, acc_delay=None): self.barycentric_time = tbl["tdbld"] * u.day - acc_delay updates["barycentric_toa"] = self.barycentric_time updates["obs_pos"] = tbl["ssb_obs_pos"].quantity - #updates["psr_pos"] = self._parent.ssb_to_psb_xyz_ICRS( - # epoch=tbl["tdbld"].astype(np.float64) - #) - updates["psr_pos"] = self._parent.ssb_to_psb_xyz_ECL( - epoch=tbl["tdbld"].astype(np.float64) - ) + if "AstrometryEquatorial" in self.components: + updates["psr_pos"] = self._parent.ssb_to_psb_xyz_ICRS( + epoch=tbl["tdbld"].astype(np.float64) + ) + elif "AstrometryEcliptic" in self.components: + updates["psr_pos"] = self._parent.ssb_to_psb_xyz_ECL( + epoch=tbl["tdbld"].astype(np.float64) + ) for par in self.binary_instance.binary_params: if par in self.binary_instance.param_aliases.keys(): alias = self.binary_instance.param_aliases[par] diff --git a/src/pint/models/stand_alone_psr_binaries/DDK_model.py b/src/pint/models/stand_alone_psr_binaries/DDK_model.py index 2e0a44cf3..fe29362f7 100644 --- a/src/pint/models/stand_alone_psr_binaries/DDK_model.py +++ b/src/pint/models/stand_alone_psr_binaries/DDK_model.py @@ -30,16 +30,28 @@ def __init__(self, t=None, input_params=None): super(DDKmodel, self).__init__() self.binary_name = "DDK" # Add parameter that specific for DD model, with default value and units - self.param_default_value.update( - { - "KIN": 0 * u.deg, - "PMELONG": 0 * u.mas / u.year, - "PMELAT": 0.5 * u.mas / u.year, - "PX": 0 * u.mas, - "KOM": 0 * u.deg, - "K96": True, - } - ) + if "AstrometryEquatorial" in self.components: + self.param_default_value.update( + { + "KIN": 0 * u.deg, + "PMRA": 0 * u.mas / u.year, + "PMDEC": 0.5 * u.mas / u.year, + "PX": 0 * u.mas, + "KOM": 0 * u.deg, + "K96": True, + } + ) + elif "AstrometryEcliptic" in self.compnents: + self.param_default_value.update( + { + "KIN": 0 * u.deg, + "PMELONG": 0 * u.mas / u.year, + "PMELAT": 0.5 * u.mas / u.year, + "PX": 0 * u.mas, + "KOM": 0 * u.deg, + "K96": True, + } + ) # If any parameter has aliases, it should be updated # self.param_aliases.update({}) @@ -72,33 +84,36 @@ def psr_pos(self): @psr_pos.setter def psr_pos(self, val): - """The pointing unit vector of a pulsar. alpha and delta described in - (Kopeikin 1995 L6 Eq10) + """The pointing unit vector of a pulsar. + long and lat are alpha and delta (if equatorial) + or elong and elat (if ecliptic) + described in + (Kopeikin 1995 Eq10) """ self._psr_pos = val # it appears that this is the vector K0 # K0 = (cos(alpha)*cos(delta), sin(alpha)*cos(delta), sin(delta)) # in equatorial coords - self._sin_elat = self._psr_pos[:, 2] - self._cos_elat = np.cos(np.arcsin(self._sin_elat)) - self._sin_elong = self._psr_pos[:, 1] / self._cos_elat - self._cos_elong = self._psr_pos[:, 0] / self._cos_elat + self._sin_lat = self._psr_pos[:, 2] + self._cos_lat = np.cos(np.arcsin(self._sin_lat)) + self._sin_long = self._psr_pos[:, 1] / self._cos_lat + self._cos_long = self._psr_pos[:, 0] / self._cos_lat @property - def sin_elat(self): - return self._sin_elat + def sin_lat(self): + return self._sin_lat @property - def cos_elat(self): - return self._cos_elat + def cos_lat(self): + return self._cos_lat @property - def sin_elong(self): - return self._sin_elong + def sin_long(self): + return self._sin_long @property - def cos_elong(self): - return self._cos_elong + def cos_long(self): + return self._cos_long @property def SINI(self): @@ -128,7 +143,7 @@ def delta_kin_proper_motion(self): d_KIN = (-PMRA_DDK * sin(KOM) + PMDEC_DDK * cos(KOM)) * (t-T0) """ d_KIN = ( - -self.PMELONG * self.sin_KOM + self.PMELAT * self.cos_KOM + -self.PMLONG_DDK * self.sin_KOM + self.PMLAT_DDK * self.cos_KOM ) * self.tt0 return d_KIN.to(self.KIN.unit) @@ -145,7 +160,7 @@ def d_SINI_d_KIN(self): def d_SINI_d_KOM(self): if self.K96: d_si_d_kom = ( - (-self.PMELONG * self.cos_KOM - self.PMELAT * self.sin_KOM) + (-self.PMLONG_DDK * self.cos_KOM - self.PMLAT_DDK * self.sin_KOM) * self.tt0 * np.cos(self.kin()) ) @@ -157,7 +172,7 @@ def d_SINI_d_KOM(self): def d_SINI_d_T0(self): if self.K96: d_si_d_kom = -( - -self.PMELONG * self.sin_KOM + self.PMELAT * self.cos_KOM + -self.PMLONG_DDK * self.sin_KOM + self.PMLAT_DDK * self.cos_KOM ) return d_si_d_kom.to(u.Unit("") / self.T0.unit) else: @@ -173,7 +188,7 @@ def d_SINI_d_par(self, par): def d_kin_proper_motion_d_KOM(self): d_DKIN_d_KOM = ( - -self.PMELONG * self.cos_KOM - self.PMELAT * self.sin_KOM + -self.PMLONG_DDK * self.cos_KOM - self.PMLAT_DDK * self.sin_KOM ) * self.tt0 return d_DKIN_d_KOM.to( self.KIN.unit / self.KOM.unit, equivalencies=u.dimensionless_angles() @@ -181,7 +196,7 @@ def d_kin_proper_motion_d_KOM(self): def d_kin_proper_motion_d_T0(self): d_DKIN_d_T0 = -1 * ( - -self.PMELONG * self.sin_KOM + self.PMELAT * self.cos_KOM + -self.PMLONG_DDK * self.sin_KOM + self.PMLAT_DDK * self.cos_KOM ) return d_DKIN_d_T0.to( self.KIN.unit / self.T0.unit, equivalencies=u.dimensionless_angles() @@ -204,8 +219,8 @@ def delta_a1_proper_motion(self): """The correction on a1 (projected semi-major axis) due to the pulsar proper motion (KOPEIKIN. 1996 Eq 8.) - d_x = a1 * cot(kin) * (-PMELONG * sin(KOM) + PMDEC_DDK * cos(KOM)) * (t-T0) - d_kin = (-PMELONG * sin(KOM) + PMDEC_DDK * cos(KOM)) * (t-T0) + d_x = a1 * cot(kin) * (-PMLONG_DDK * sin(KOM) + PMDEC_DDK * cos(KOM)) * (t-T0) + d_kin = (-PMLONG_DDK * sin(KOM) + PMDEC_DDK * cos(KOM)) * (t-T0) d_x = a1 * d_kin * cot(kin) """ a1 = self.a1_k(False, False) @@ -256,14 +271,14 @@ def delta_omega_proper_motion(self): """The correction on omega (Longitude of periastron) due to the pulsar proper motion (KOPEIKIN. 1996 Eq 9.) - d_omega = csc(i) * (PMELONG * cos(KOM) + PMDEC_DDK * sin(KOM)) * (t-T0) + d_omega = csc(i) * (PMLONG_DDK * cos(KOM) + PMDEC_DDK * sin(KOM)) * (t-T0) """ kin = self.kin() sin_kin = np.sin(kin) omega_dot = ( 1.0 / sin_kin - * (self.PMELONG * self.cos_KOM + self.PMELAT * self.sin_KOM) + * (self.PMLONG_DDK * self.cos_KOM + self.PMLAT_DDK * self.sin_KOM) ) return (omega_dot * self.tt0).to(self.OM.unit) @@ -274,7 +289,7 @@ def d_delta_omega_proper_motion_d_KIN(self): d_omega_dot = ( -cos_kin / sin_kin ** 2 - * (self.PMELONG * self.cos_KOM + self.PMELAT * self.sin_KOM) + * (self.PMLONG_DDK * self.cos_KOM + self.PMLAT_DDK * self.sin_KOM) ) return (d_omega_dot * self.tt0).to( self.OM.unit / self.KIN.unit, equivalencies=u.dimensionless_angles() @@ -289,8 +304,9 @@ def d_delta_omega_proper_motion_d_KOM(self): -cos_kin / sin_kin ** 2 * d_kin_d_KOM - * (self.PMELONG * self.cos_KOM + self.PMELAT * self.sin_KOM) - + (-self.PMELONG * self.sin_KOM + self.PMELAT * self.cos_KOM) / sin_kin + * (self.PMLONG_DDK * self.cos_KOM + self.PMLAT_DDK * self.sin_KOM) + + (-self.PMLONG_DDK * self.sin_KOM + self.PMLAT_DDK * self.cos_KOM) + / sin_kin ) return (d_omega_dot * self.tt0).to( self.OM.unit / self.KOM.unit, equivalencies=u.dimensionless_angles() @@ -304,7 +320,7 @@ def d_delta_omega_proper_motion_d_T0(self): # with u.set_enabled_equivalencies(u.dimensionless_angles()): d_omega_d_T0 = ( -cos_kin / sin_kin ** 2 * d_kin_d_T0 * self.tt0 - 1.0 / sin_kin - ) * (self.PMELONG * self.cos_KOM + self.PMELAT * self.sin_KOM) + ) * (self.PMLONG_DDK * self.cos_KOM + self.PMLAT_DDK * self.sin_KOM) return d_omega_d_T0.to(self.OM.unit / self.T0.unit) # The code below is to implement the binary model parameter correction due @@ -315,18 +331,16 @@ def delta_I0(self): """ Refernce: (Kopeikin 1995 Eq 15) """ - return ( - -self.obs_pos[:, 0] * self.sin_elong + self.obs_pos[:, 1] * self.cos_elong - ) + return -self.obs_pos[:, 0] * self.sin_long + self.obs_pos[:, 1] * self.cos_long def delta_J0(self): """ Reference: (Kopeikin 1995 Eq 16) """ return ( - -self.obs_pos[:, 0] * self.sin_elat * self.cos_elong - - self.obs_pos[:, 1] * self.sin_elat * self.sin_elong - + self.obs_pos[:, 2] * self.cos_elat + -self.obs_pos[:, 0] * self.sin_lat * self.cos_long + - self.obs_pos[:, 1] * self.sin_lat * self.sin_long + + self.obs_pos[:, 2] * self.cos_lat ) def delta_sini_parallax(self): From 5894effae0a8ca3d7191f0cd82c9305b5bf09b6c Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Thu, 14 Apr 2022 21:15:09 -0500 Subject: [PATCH 03/26] i think this works but need more tests --- src/pint/models/binary_ddk.py | 26 ++++++++------- src/pint/models/pulsar_binary.py | 4 +-- .../stand_alone_psr_binaries/DDK_model.py | 32 ++++++------------- 3 files changed, 26 insertions(+), 36 deletions(-) diff --git a/src/pint/models/binary_ddk.py b/src/pint/models/binary_ddk.py index da6f20031..5070d954f 100644 --- a/src/pint/models/binary_ddk.py +++ b/src/pint/models/binary_ddk.py @@ -75,27 +75,27 @@ def __init__(self,): @property def PMLONG_DDK(self): - if "AstrometryEquatorial" in self.components: - return self.PMRA - elif "AstrometryEcliptic" in self.components: - return self.PMELONG + if "AstrometryEquatorial" in self._parent.components: + return self._parent.PMRA + elif "AstrometryEcliptic" in self._parent.components: + return self._parent.PMELONG @property def PMLAT_DDK(self): - if "AstrometryEquatorial" in self.components: - return self.PMDEC - elif "AstrometryEcliptic" in self.components: - return self.PMELAT + if "AstrometryEquatorial" in self._parent.components: + return self._parent.PMDEC + elif "AstrometryEcliptic" in self._parent.components: + return self._parent.PMELAT def validate(self): """Validate parameters.""" super().validate() - if "AstrometryEquatorial" in self.components: + if "AstrometryEquatorial" in self._parent.components: if "PMRA" not in self._parent.params or "PMDEC" not in self._parent.params: raise MissingParameter( "DDK", "DDK model needs proper motion parameters." ) - elif "AstrometryEcliptic" in self.components: + elif "AstrometryEcliptic" in self._parent.components: if ( "PMELONG" not in self._parent.params or "PMELAT" not in self._parent.params @@ -118,7 +118,7 @@ def alternative_solutions(self): There are 4 potential local minima for a DDK model where a1dot is the same These are given by where Eqn. 8 in Kopeikin (1996) is equal to the best-fit value. - We first define the symmetry point where a1dot is zero: + We first define the symmetry point where a1dot is zero (in equatorial coordinates): :math:`KOM_0 = \\tan^{-1} (\mu_{\delta} / \mu_{\\alpha})` @@ -143,7 +143,9 @@ def alternative_solutions(self): y0 = self.KOM.quantity solutions = [(x0, y0)] # where Eqn. 8 in Kopeikin (1996) that is equal to 0 - KOM_zero = np.arctan2(self.PMDEC_DDK.quantity, self.PMRA_DDK.quantity).to(u.deg) + KOM_zero = np.arctan2(self.PMLAT_DDK.quantity, self.PMLONG_DDK.quantity).to( + u.deg + ) # second one in the same banana solutions += [(x0, (2 * (KOM_zero) - y0 - 180 * u.deg) % (360 * u.deg))] # and the other banana diff --git a/src/pint/models/pulsar_binary.py b/src/pint/models/pulsar_binary.py index 45b2de372..497ca50fb 100644 --- a/src/pint/models/pulsar_binary.py +++ b/src/pint/models/pulsar_binary.py @@ -294,11 +294,11 @@ def update_binary_object(self, toas, acc_delay=None): self.barycentric_time = tbl["tdbld"] * u.day - acc_delay updates["barycentric_toa"] = self.barycentric_time updates["obs_pos"] = tbl["ssb_obs_pos"].quantity - if "AstrometryEquatorial" in self.components: + if "AstrometryEquatorial" in self._parent.components: updates["psr_pos"] = self._parent.ssb_to_psb_xyz_ICRS( epoch=tbl["tdbld"].astype(np.float64) ) - elif "AstrometryEcliptic" in self.components: + elif "AstrometryEcliptic" in self._parent.components: updates["psr_pos"] = self._parent.ssb_to_psb_xyz_ECL( epoch=tbl["tdbld"].astype(np.float64) ) diff --git a/src/pint/models/stand_alone_psr_binaries/DDK_model.py b/src/pint/models/stand_alone_psr_binaries/DDK_model.py index fe29362f7..c091644b7 100644 --- a/src/pint/models/stand_alone_psr_binaries/DDK_model.py +++ b/src/pint/models/stand_alone_psr_binaries/DDK_model.py @@ -30,28 +30,16 @@ def __init__(self, t=None, input_params=None): super(DDKmodel, self).__init__() self.binary_name = "DDK" # Add parameter that specific for DD model, with default value and units - if "AstrometryEquatorial" in self.components: - self.param_default_value.update( - { - "KIN": 0 * u.deg, - "PMRA": 0 * u.mas / u.year, - "PMDEC": 0.5 * u.mas / u.year, - "PX": 0 * u.mas, - "KOM": 0 * u.deg, - "K96": True, - } - ) - elif "AstrometryEcliptic" in self.compnents: - self.param_default_value.update( - { - "KIN": 0 * u.deg, - "PMELONG": 0 * u.mas / u.year, - "PMELAT": 0.5 * u.mas / u.year, - "PX": 0 * u.mas, - "KOM": 0 * u.deg, - "K96": True, - } - ) + self.param_default_value.update( + { + "KIN": 0 * u.deg, + "PMLONG_DDK": 0 * u.mas / u.year, + "PMLAT_DDK": 0.5 * u.mas / u.year, + "PX": 0 * u.mas, + "KOM": 0 * u.deg, + "K96": True, + } + ) # If any parameter has aliases, it should be updated # self.param_aliases.update({}) From ec43a51e56edfd74dda005633d951d85cb25c44b Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Fri, 15 Apr 2022 14:07:07 -0500 Subject: [PATCH 04/26] added debug lines about DDK coordinate frame --- src/pint/models/binary_ddk.py | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/src/pint/models/binary_ddk.py b/src/pint/models/binary_ddk.py index 5070d954f..ae15257c0 100644 --- a/src/pint/models/binary_ddk.py +++ b/src/pint/models/binary_ddk.py @@ -1,6 +1,8 @@ """The DDK model - Damour and Deruelle with kinematics.""" import numpy as np from astropy import units as u +from loguru import logger as log + from pint.models.binary_dd import BinaryDD from pint.models.parameter import boolParameter, floatParameter from pint.models.stand_alone_psr_binaries.DDK_model import DDKmodel @@ -91,11 +93,13 @@ def validate(self): """Validate parameters.""" super().validate() if "AstrometryEquatorial" in self._parent.components: + log.debug("Validating DDK model in ICRS coordinates") if "PMRA" not in self._parent.params or "PMDEC" not in self._parent.params: raise MissingParameter( "DDK", "DDK model needs proper motion parameters." ) elif "AstrometryEcliptic" in self._parent.components: + log.debug("Validating DDK model in ECL coordinates") if ( "PMELONG" not in self._parent.params or "PMELAT" not in self._parent.params From 156411024744e0532d3251f1957a6acf04be11b8 Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Thu, 21 Apr 2022 13:42:18 -0500 Subject: [PATCH 05/26] made versions of J1713 par file without extra DMX/EFAC/EQUADs to correspond to the shortened data-set. Also explicitly ICRS & ECL --- ...713+0747_NANOGrav_11yv0_short.gls.ICRS.par | 182 ++ ...ANOGrav_11yv0_short.gls.ICRS.par.libstempo | 2002 +++++++++++++++++ .../J1713+0747_NANOGrav_11yv0_short.gls.par | 264 +++ ...747_NANOGrav_11yv0_short.gls.par.libstempo | 2002 +++++++++++++++++ 4 files changed, 4450 insertions(+) create mode 100644 tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par create mode 100644 tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par.libstempo create mode 100644 tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.par create mode 100644 tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.par.libstempo diff --git a/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par new file mode 100644 index 000000000..bd39c0b7a --- /dev/null +++ b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par @@ -0,0 +1,182 @@ +# Created: 2022-04-15T11:55:56.188915 +# PINT_version: 0.7+2007.g3ba2556c +# User: David Kaplan (kaplan) +# Host: plock +# OS: macOS-10.16-x86_64-i386-64bit +# Format: pint +PSR J1713+0747 +EPHEM DE421 +CLK TT(BIPM2015) +UNITS TDB +START 53393.5600000000000001 +FINISH 57387.6630000000000000 +INFO -f +TIMEEPH FB90 +DILATEFREQ N +DMDATA N +NTOA 27571 +CHI2 0.0 +RAJ 17:13:49.53355031 1 0.00000057727246830927 +DECJ 7:47:37.48847685 1 0.00001419450415241618 +PMRA 4.925763856775273 1 0.002489055022551827 +PMDEC -3.9156180453775624 1 0.004087126752953659 +PX 0.8211 1 0.0258 +POSEPOCH 55391.0000000000000000 +F0 218.811843796082627 1 9.88e-14 +F1 -4.083888637248e-16 1 1.433249826455e-21 +PEPOCH 55391.0000000000000000 +CORRECT_TROPOSPHERE N +PLANET_SHAPIRO N +SOLARN0 0.0 +SWM 0.0 +DM 15.917131 +DMX 6.0 +DMX_0001 0.0001581076 1 0.015966649 +DMXR1_0001 53393.5513800000000000 +DMXR2_0001 53394.6168600000000001 +DMX_0002 0.0001312895 1 0.0159669931 +DMXR1_0002 53420.4772700000000000 +DMXR2_0002 53421.5005700000000001 +DMX_0003 0.0001440788 1 0.0159665103 +DMXR1_0003 53448.3922300000000000 +DMXR2_0003 53448.4519200000000000 +DMX_0004 0.000131003 1 0.0159670536 +DMXR1_0004 53505.2740400000000000 +DMXR2_0004 53505.3113000000000000 +DMX_0005 0.0002021636 1 0.0159673864 +DMXR1_0005 53569.0373200000000000 +DMXR2_0005 53569.1049500000000000 +DMX_0006 0.0001332537 1 0.0159676289 +DMXR1_0006 53628.8939400000000001 +DMXR2_0006 53628.9541299999999999 +DMX_0007 0.0001501226 1 0.0159672741 +DMXR1_0007 53686.7279300000000001 +DMXR2_0007 53686.7874300000000000 +DMX_0008 -6.81953e-05 1 0.0159677759 +DMXR1_0008 53715.6614600000000000 +DMXR2_0008 53715.7231300000000001 +DMX_0009 0.000177483 1 0.0159667996 +DMXR1_0009 53750.5603500000000000 +DMXR2_0009 53750.6188000000000000 +DMX_0010 0.0001124556 1 0.0159668222 +DMXR1_0010 53798.3329800000000000 +DMXR2_0010 53800.3661000000000000 +DMX_0011 0.0001476488 1 0.0159671075 +DMXR1_0011 53838.2289300000000000 +DMXR2_0011 53851.3209600000000000 +DMX_0012 0.0001862737 1 0.0159671677 +DMXR1_0012 53858.1788800000000000 +DMXR2_0012 53859.2002700000000000 +DMX_0013 0.000128688 1 0.0159671287 +DMXR1_0013 53889.0875200000000000 +DMXR2_0013 53891.2400500000000000 +DMX_0014 0.0001084415 1 0.0159673684 +DMXR1_0014 53918.0085000000000000 +DMXR2_0014 53919.0401000000000000 +DMX_0015 0.0001938115 1 0.0159675002 +DMXR1_0015 53967.9979900000000000 +DMXR2_0015 53981.8654100000000000 +DMX_0016 0.0001601668 1 0.0159662792 +DMXR1_0016 54008.8930600000000001 +DMXR2_0016 54013.7774900000000000 +DMX_0017 0.0001176278 1 0.0159671525 +DMXR1_0017 54035.6873200000000000 +DMXR2_0017 54043.8191600000000000 +DMX_0018 0.0001508801 1 0.0159670848 +DMXR1_0018 54064.6056400000000001 +DMXR2_0018 54072.6150400000000000 +DMX_0019 0.0001109195 1 0.0159667306 +DMXR1_0019 54092.6661199999999999 +DMXR2_0019 54101.5363600000000001 +DMX_0020 2.0115e-05 1 0.0159666748 +DMXR1_0020 54133.4559500000000001 +DMXR2_0020 54135.5704600000000000 +DMX_0021 -2.69677e-05 1 0.0159661531 +DMXR1_0021 54218.2258400000000000 +DMXR2_0021 54220.2108200000000000 +DMX_0022 6.53544e-05 1 0.0159670638 +DMXR1_0022 54356.9533799999999999 +DMXR2_0022 54357.0051200000000000 +DMX_0023 8.44819e-05 1 0.0159671724 +DMXR1_0023 54373.7595599999999999 +DMXR2_0023 54374.7908999999999999 +DMX_0024 4.15937e-05 1 0.0159667417 +DMXR1_0024 54400.6875100000000000 +DMXR2_0024 54401.7160299999999999 +DMX_0025 1.87877e-05 1 0.0159667009 +DMXR1_0025 54428.6244999999999999 +DMXR2_0025 54429.6290500000000000 +DMX_0026 1.11221e-05 1 0.0159667281 +DMXR1_0026 54462.5354100000000001 +DMXR2_0026 54472.6247600000000000 +DMX_0027 1.30712e-05 1 0.0159669864 +DMXR1_0027 54519.4618099999999999 +DMXR2_0027 54529.3729200000000000 +DMX_0028 -4.50723e-05 1 0.0159658526 +DMXR1_0028 54551.2834600000000000 +DMXR2_0028 54552.3103300000000000 +DMX_0029 -6.75115e-05 1 0.0159665567 +DMXR1_0029 54569.3571800000000000 +DMXR2_0029 54581.2507799999999999 +DMX_0030 -3.28259e-05 1 0.0159668299 +DMXR1_0030 54641.0454400000000000 +DMXR2_0030 54644.1897500000000000 +DMX_0031 3.35395e-05 1 0.0159667138 +DMXR1_0031 54672.9458300000000001 +DMXR2_0031 54678.0848300000000000 +BINARY DDK +PB 67.82512992243068 1 1.3525e-09 +PBDOT 0.0 +A1 32.342422803 1 1.1e-07 +A1DOT 0.0 +E 7.49406e-05 1 6e-10 +EDOT 0.0 +T0 55388.8362191749000000 1 0.0002469385 +OM 176.198458885014 1 0.00131067624 +OMDOT 0.0 +M2 0.283395 1 0.010423 +A0 0.0 +B0 0.0 +GAMMA 0.0 +DR 0.0 +DTH 0.0 +KIN 71.969 1 0.562 +KOM 83.1 1 1.8 +K96 Y +FD1 -0.00060236876 1 0.000132645245 +FD2 0.000575642947 1 0.000132978432 +FD3 -0.000357072311 1 8.79252546e-05 +FD4 0.000145598103 1 3.95713766e-05 +FD5 -3.10227443e-05 1 9.36494428e-06 +#T2EFAC -f Rcvr_800_GUPPI 1.067 +#T2EQUAD -f Rcvr_800_GUPPI 0.0481 +T2EFAC -f Rcvr1_2_GASP 1.079 +T2EFAC -f L-wide_ASP 1.018 +#T2EFAC -f Rcvr1_2_GUPPI 1.041 +T2EFAC -f S-wide_ASP 1.115 +T2EFAC -f Rcvr_800_GASP 1.085 +#T2EFAC -f L-wide_PUPPI 1.088 +#T2EFAC -f S-wide_PUPPI 1.116 +T2EQUAD -f Rcvr1_2_GASP 0.045 +T2EQUAD -f L-wide_ASP 0.029 +#T2EQUAD -f Rcvr1_2_GUPPI 0.0004 +T2EQUAD -f S-wide_ASP 0.0001 +T2EQUAD -f Rcvr_800_GASP 0.1343 +#T2EQUAD -f L-wide_PUPPI 0.0124 +#T2EQUAD -f S-wide_PUPPI 0.0158 +RNAMP 0.021246 +RNIDX -1.5809 +ECORR -f L-wide_ASP 0.0948 +#ECORR -f L-wide_PUPPI 0.0887 +ECORR -f Rcvr1_2_GASP 0.0926 +#ECORR -f Rcvr1_2_GUPPI 0.0786 +ECORR -f Rcvr_800_GASP 0.0163 +#ECORR -f Rcvr_800_GUPPI 0.264 +ECORR -f S-wide_ASP 0.1177 +#ECORR -f S-wide_PUPPI 0.0957 +TZRMJD 55395.9232798000827893 +TZRSITE 1 +TZRFRQ 850.468 +JUMP -fe Rcvr1_2 9.637e-06 1 6.9e-08 +JUMP -fe L-wide 1.9826e-05 1 6.9e-08 +JUMP -fe S-wide 2.775e-05 1 7.1e-08 diff --git a/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par.libstempo b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par.libstempo new file mode 100644 index 000000000..128bde4b2 --- /dev/null +++ b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par.libstempo @@ -0,0 +1,2002 @@ +# Created using libstempo on 2022-04-21T13:37:37.949886 +# Residual BinaryDelay +-8.258987e-06 -1.403934e+01 +-8.637769e-06 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1.289845e+01 +-1.074902e-06 1.289845e+01 diff --git a/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.par b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.par new file mode 100644 index 000000000..f5830c622 --- /dev/null +++ b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.par @@ -0,0 +1,264 @@ +PSR J1713+0747 +LAMBDA 256.6686952405695 1 0.0000000023351 +BETA 30.7003604937060 1 0.0000000041466 +PMLAMBDA 5.2671 1 0.0021 +PMBETA -3.4428 1 0.0043 +PX 0.8211 1 0.0258 +F0 218.8118437960826270 1 0.0000000000000988 +F1 -4.083888637248D-16 1 1.433249826455D-21 +PEPOCH 55391.000000 +START 53393.560 +FINISH 57387.663 +DM 15.917131 +DMX 6.000000 +DMX_0001 1.58107600D-04 1 1.59666490D-02 +DMXEP_0001 53393.56138 +DMXR1_0001 53393.55138 +DMXR2_0001 53394.61686 +DMXF1_0001 1370.000 +DMXF2_0001 2382.000 +DMX_0002 1.31289500D-04 1 1.59669931D-02 +DMXEP_0002 53420.48727 +DMXR1_0002 53420.47727 +DMXR2_0002 53421.50057 +DMXF1_0002 1382.000 +DMXF2_0002 2382.000 +DMX_0003 1.44078800D-04 1 1.59665103D-02 +DMXEP_0003 53448.40223 +DMXR1_0003 53448.39223 +DMXR2_0003 53448.45192 +DMXF1_0003 1382.000 +DMXF2_0003 2382.000 +DMX_0004 1.31003000D-04 1 1.59670536D-02 +DMXEP_0004 53505.28404 +DMXR1_0004 53505.27404 +DMXR2_0004 53505.31130 +DMXF1_0004 1382.000 +DMXF2_0004 2382.000 +DMX_0005 2.02163600D-04 1 1.59673864D-02 +DMXEP_0005 53569.04733 +DMXR1_0005 53569.03732 +DMXR2_0005 53569.10495 +DMXF1_0005 1414.000 +DMXF2_0005 2382.000 +DMX_0006 1.33253700D-04 1 1.59676289D-02 +DMXEP_0006 53628.90395 +DMXR1_0006 53628.89394 +DMXR2_0006 53628.95413 +DMXF1_0006 1382.000 +DMXF2_0006 2382.000 +DMX_0007 1.50122600D-04 1 1.59672741D-02 +DMXEP_0007 53686.73794 +DMXR1_0007 53686.72793 +DMXR2_0007 53686.78743 +DMXF1_0007 1382.000 +DMXF2_0007 2382.000 +DMX_0008 -6.81953000D-05 1 1.59677759D-02 +DMXEP_0008 53715.67147 +DMXR1_0008 53715.66146 +DMXR2_0008 53715.72313 +DMXF1_0008 1382.000 +DMXF2_0008 2382.000 +DMX_0009 1.77483000D-04 1 1.59667996D-02 +DMXEP_0009 53750.57036 +DMXR1_0009 53750.56035 +DMXR2_0009 53750.61880 +DMXF1_0009 1382.000 +DMXF2_0009 2382.000 +DMX_0010 1.12455600D-04 1 1.59668222D-02 +DMXEP_0010 53798.34298 +DMXR1_0010 53798.33298 +DMXR2_0010 53800.36610 +DMXF1_0010 792.000 +DMXF2_0010 1442.000 +DMX_0011 1.47648800D-04 1 1.59671075D-02 +DMXEP_0011 53838.23893 +DMXR1_0011 53838.22893 +DMXR2_0011 53851.32096 +DMXF1_0011 792.000 +DMXF2_0011 1442.000 +DMX_0012 1.86273700D-04 1 1.59671677D-02 +DMXEP_0012 53858.18889 +DMXR1_0012 53858.17888 +DMXR2_0012 53859.20027 +DMXF1_0012 792.000 +DMXF2_0012 1432.000 +DMX_0013 1.28688000D-04 1 1.59671287D-02 +DMXEP_0013 53889.09753 +DMXR1_0013 53889.08752 +DMXR2_0013 53891.24005 +DMXF1_0013 792.000 +DMXF2_0013 2378.000 +DMX_0014 1.08441500D-04 1 1.59673684D-02 +DMXEP_0014 53918.01850 +DMXR1_0014 53918.00850 +DMXR2_0014 53919.04010 +DMXF1_0014 792.000 +DMXF2_0014 1432.000 +DMX_0015 1.93811500D-04 1 1.59675002D-02 +DMXEP_0015 53968.00800 +DMXR1_0015 53967.99799 +DMXR2_0015 53981.86541 +DMXF1_0015 792.000 +DMXF2_0015 1442.000 +DMX_0016 1.60166800D-04 1 1.59662792D-02 +DMXEP_0016 54008.90306 +DMXR1_0016 54008.89306 +DMXR2_0016 54013.77749 +DMXF1_0016 824.000 +DMXF2_0016 2378.000 +DMX_0017 1.17627800D-04 1 1.59671525D-02 +DMXEP_0017 54035.69732 +DMXR1_0017 54035.68732 +DMXR2_0017 54043.81916 +DMXF1_0017 824.000 +DMXF2_0017 2378.000 +DMX_0018 1.50880100D-04 1 1.59670848D-02 +DMXEP_0018 54064.61564 +DMXR1_0018 54064.60564 +DMXR2_0018 54072.61504 +DMXF1_0018 824.000 +DMXF2_0018 1432.000 +DMX_0019 1.10919500D-04 1 1.59667306D-02 +DMXEP_0019 54092.67612 +DMXR1_0019 54092.66612 +DMXR2_0019 54101.53636 +DMXF1_0019 824.000 +DMXF2_0019 1442.000 +DMX_0020 2.01150000D-05 1 1.59666748D-02 +DMXEP_0020 54133.46596 +DMXR1_0020 54133.45595 +DMXR2_0020 54135.57046 +DMXF1_0020 824.000 +DMXF2_0020 2374.000 +DMX_0021 -2.69677000D-05 1 1.59661531D-02 +DMXEP_0021 54218.23584 +DMXR1_0021 54218.22584 +DMXR2_0021 54220.21082 +DMXF1_0021 824.000 +DMXF2_0021 1432.000 +DMX_0022 6.53544000D-05 1 1.59670638D-02 +DMXEP_0022 54356.96339 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+DMXF2_0028 1432.000 +DMX_0029 -6.75115000D-05 1 1.59665567D-02 +DMXEP_0029 54569.36719 +DMXR1_0029 54569.35718 +DMXR2_0029 54581.25078 +DMXF1_0029 824.000 +DMXF2_0029 1442.000 +DMX_0030 -3.28259000D-05 1 1.59668299D-02 +DMXEP_0030 54641.05545 +DMXR1_0030 54641.04544 +DMXR2_0030 54644.18975 +DMXF1_0030 824.000 +DMXF2_0030 1438.000 +DMX_0031 3.35395000D-05 1 1.59667138D-02 +DMXEP_0031 54672.95584 +DMXR1_0031 54672.94583 +DMXR2_0031 54678.08483 +DMXF1_0031 828.000 +DMXF2_0031 2378.000 +FD1 -6.02368760D-04 1 1.32645245D-04 +FD2 5.75642947D-04 1 1.32978432D-04 +FD3 -3.57072311D-04 1 8.79252546D-05 +FD4 1.45598103D-04 1 3.95713766D-05 +FD5 -3.10227443D-05 1 9.36494428D-06 +SOLARN0 0.00 +EPHEM DE421 +ECL IERS2003 +CLK TT(BIPM2015) +UNITS TDB +TIMEEPH FB90 +#T2CMETHOD TEMPO +CORRECT_TROPOSPHERE N +PLANET_SHAPIRO N +DILATEFREQ N +NTOA 27571 +TRES 0.18 +TZRMJD 55395.92327980008279 +TZRFRQ 850.468 +TZRSITE 1 +MODE 1 +NITS 1 +INFO -f +BINARY DDK +A1 32.342422803 1 0.000000110 +E 0.0000749406 1 0.0000000006 +T0 55388.8362191749 1 0.0002469385 +PB 67.82512992243068 1 0.00000000135250 +OM 176.198458885014 1 0.001310676240 +M2 0.283395 1 0.010423 +KOM 83.100 1 1.800 +KIN 71.969 1 0.562 +K96 1 +RNAMP 0.21246D-01 +RNIDX -1.58090 +#T2EFAC -f Rcvr_800_GUPPI 1.067 +T2EFAC -f Rcvr1_2_GASP 1.079 +T2EFAC -f L-wide_ASP 1.018 +#T2EFAC -f Rcvr1_2_GUPPI 1.041 +T2EFAC -f S-wide_ASP 1.115 +T2EFAC -f Rcvr_800_GASP 1.085 +#T2EFAC -f L-wide_PUPPI 1.088 +#T2EFAC -f S-wide_PUPPI 1.116 +#T2EQUAD -f Rcvr_800_GUPPI 0.04810 +T2EQUAD -f Rcvr1_2_GASP 0.04500 +T2EQUAD -f L-wide_ASP 0.02900 +#T2EQUAD -f Rcvr1_2_GUPPI 0.00040 +T2EQUAD -f S-wide_ASP 0.00010 +T2EQUAD -f Rcvr_800_GASP 0.13430 +#T2EQUAD -f L-wide_PUPPI 0.01240 +#T2EQUAD -f S-wide_PUPPI 0.01580 +ECORR -f L-wide_ASP 0.09480 +#ECORR -f L-wide_PUPPI 0.08870 +ECORR -f Rcvr1_2_GASP 0.09260 +#ECORR -f Rcvr1_2_GUPPI 0.07860 +ECORR -f Rcvr_800_GASP 0.01630 +#ECORR -f Rcvr_800_GUPPI 0.26400 +ECORR -f S-wide_ASP 0.11770 +#ECORR -f S-wide_PUPPI 0.09570 +JUMP -fe Rcvr1_2 0.000009637 1 0.000000069 +JUMP -fe L-wide 0.000019826 1 0.000000069 +JUMP -fe S-wide 0.000027750 1 0.000000071 +# Converted by make_release.py on Mon Mar 6 13:06:08 2017 by pdemores +# Original filename: 'J1713+0747/J1713+0747.djn12.par' +# Ran additional tempo iteration diff --git a/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.par.libstempo b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.par.libstempo new file mode 100644 index 000000000..50bcf0ca2 --- /dev/null +++ b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.par.libstempo @@ -0,0 +1,2002 @@ +# Created using libstempo on 2022-04-21T13:37:38.474537 +# Residual BinaryDelay +-7.862150e-06 -1.403934e+01 +-8.240625e-06 -1.403934e+01 +-8.197958e-06 -1.403934e+01 +-7.871359e-06 -1.403934e+01 +-8.280201e-06 -1.403934e+01 +-8.085306e-06 -1.403934e+01 +-8.031282e-06 -1.403934e+01 +-8.264240e-06 -1.403934e+01 +-7.762390e-06 -1.403934e+01 +-7.912491e-06 -1.403934e+01 +-8.027905e-06 -1.403934e+01 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2.104704e+00 +2.379911e-06 2.104704e+00 +2.384516e-06 2.104704e+00 +2.362108e-06 2.104704e+00 +2.280458e-06 2.104704e+00 +2.341235e-06 2.104704e+00 +2.343384e-06 2.104704e+00 +2.327115e-06 2.104704e+00 +2.533410e-06 2.104704e+00 +2.776211e-06 2.104704e+00 +2.465880e-06 2.123487e+00 +2.450225e-06 2.123487e+00 +2.161053e-06 2.123487e+00 +2.141407e-06 2.123487e+00 +2.123604e-06 2.123487e+00 +2.461889e-06 2.123487e+00 +2.318235e-06 2.123487e+00 +2.430273e-06 2.123487e+00 +2.475089e-06 2.123487e+00 +2.394666e-06 2.123487e+00 +2.609228e-06 2.123487e+00 +2.280172e-06 2.123487e+00 +-2.331306e-06 1.289845e+01 +-1.819326e-06 1.289845e+01 +1.374655e-08 1.289845e+01 +-8.196149e-07 1.289845e+01 +-8.782432e-07 1.289845e+01 From 8939dc93371883bde54679835ffe4aabb9c164cb Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Thu, 21 Apr 2022 13:42:34 -0500 Subject: [PATCH 06/26] tool to create libstempo DDK comparison files --- tests/datafile/make_J1713_libstempo.py | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 tests/datafile/make_J1713_libstempo.py diff --git a/tests/datafile/make_J1713_libstempo.py b/tests/datafile/make_J1713_libstempo.py new file mode 100644 index 000000000..c5c092e30 --- /dev/null +++ b/tests/datafile/make_J1713_libstempo.py @@ -0,0 +1,21 @@ +import libstempo as T +import numpy as np +import datetime + +timJ1713 = "J1713+0747_NANOGrav_11yv0_short.tim" +# one file in ICRS, one in ECL +parfiles = [ + "J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par", + "J1713+0747_NANOGrav_11yv0_short.gls.par", +] +for parfile in parfiles: + psr = T.tempopulsar(parfile=parfile, timfile=timJ1713) + x = np.array([psr.residuals(), psr.binarydelay()]) + fout = open(parfile + ".libstempo", "w") + fout.write( + "# Created using libstempo on %s\n" % datetime.datetime.now().isoformat() + ) + fout.write("# Residual BinaryDelay\n") + for i in range(psr.nobs): + fout.write("%e %e\n" % (x[0, i], x[1, i])) + fout.close() From 4233a880c30235591070bdc371bc7e8c89c5f69c Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Thu, 21 Apr 2022 13:43:00 -0500 Subject: [PATCH 07/26] remove old longdouble2str --- tests/datafile/get_tempo2_result.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/tests/datafile/get_tempo2_result.py b/tests/datafile/get_tempo2_result.py index 5015e4504..23408f344 100644 --- a/tests/datafile/get_tempo2_result.py +++ b/tests/datafile/get_tempo2_result.py @@ -1,7 +1,7 @@ """This is a script for getting tempo/tempo2/libstempo result for the propose of testing PINT """ -from pint.utils import longdouble2str +#from pint.utils import longdouble2str try: import tempo2_utils as t2u @@ -47,10 +47,10 @@ def get_tempo2_result(parfile, timfile, general2=None): outstr += "\n" f.write(outstr) for ii in range(len(residuals)): - outstr = longdouble2str(residuals[ii]) + " " + outstr = str(residuals[ii]) + " " if general2 is not None: for keys in general2: - outstr += longdouble2str(tempo2_vals[keys][ii]) + " " + outstr += str(tempo2_vals[keys][ii]) + " " outstr += "\n" f.write(outstr) f.close() From 35e54575e55b87e26381a372dda17813635d1690 Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Thu, 21 Apr 2022 13:43:12 -0500 Subject: [PATCH 08/26] update for ECL and ICRS --- tests/test_ddk.py | 105 ++++++++++++++++++++++++++++++---------------- 1 file changed, 68 insertions(+), 37 deletions(-) diff --git a/tests/test_ddk.py b/tests/test_ddk.py index 7cd14e874..5396b7ee9 100644 --- a/tests/test_ddk.py +++ b/tests/test_ddk.py @@ -42,73 +42,104 @@ class TestDDK(unittest.TestCase): - """Compare delays from the dd model with libstempo and PINT""" + """Compare delays from the ddk model with libstempo and PINT""" @classmethod def setUpClass(cls): - cls.parfileJ1713 = "J1713+0747_NANOGrav_11yv0.gls.par" + cls.parfileJ1713 = "J1713+0747_NANOGrav_11yv0_short.gls.par" + cls.ICRSparfileJ1713 = "J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par" cls.timJ1713 = "J1713+0747_NANOGrav_11yv0_short.tim" cls.toasJ1713 = toa.get_TOAs( os.path.join(datadir, cls.timJ1713), ephem="DE421", planets=False ) cls.toasJ1713.table.sort("index") - cls.modelJ1713 = mb.get_model(os.path.join(datadir, cls.parfileJ1713)) + cls.ECLmodelJ1713 = mb.get_model(os.path.join(datadir, cls.parfileJ1713)) + cls.ICRSmodelJ1713 = mb.get_model(os.path.join(datadir, cls.ICRSparfileJ1713)) # libstempo result - cls.ltres, cls.ltbindelay = np.genfromtxt( - os.path.join(datadir, cls.parfileJ1713 + ".tempo_test"), unpack=True + # calculate using: datafile/make_J1713_libstempo.py + cls.ECLltres, cls.ECLltbindelay = np.genfromtxt( + os.path.join(datadir, cls.parfileJ1713 + ".libstempo"), unpack=True + ) + cls.ICRSltres, cls.ICRSltbindelay = np.genfromtxt( + os.path.join(datadir, cls.ICRSparfileJ1713 + ".libstempo"), unpack=True ) - def test_J1713_binary_delay(self): + def test_J1713_ECL_binary_delay(self): # Calculate delays with PINT # NOTE tempo and PINT has different definition of parameter KOM. So lower the # threshold - pint_binary_delay = self.modelJ1713.binarymodel_delay(self.toasJ1713, None) - assert np.all( - np.abs(pint_binary_delay.value + self.ltbindelay) < 5e-7 - ), "DDK J1713 TEST FAILED" + pint_binary_delay = self.ECLmodelJ1713.binarymodel_delay(self.toasJ1713, None) + assert np.all(np.abs(pint_binary_delay.value + self.ECLltbindelay) < 5e-6), ( + "DDK J1713 ECL BINARY DELAY TEST FAILED: max difference is %e" + % np.abs(pint_binary_delay.value + self.ECLltbindelay).max() + ) + + def test_J1713_ICRS_binary_delay(self): + # Calculate delays with PINT + # NOTE tempo and PINT has different definition of parameter KOM. So lower the + # threshold + pint_binary_delay = self.ICRSmodelJ1713.binarymodel_delay(self.toasJ1713, None) + assert np.all(np.abs(pint_binary_delay.value + self.ECLltbindelay) < 6e-6), ( + "DDK J1713 ICRS BINARY DELAY TEST FAILED: max difference is %e" + % np.abs(pint_binary_delay.value + self.ICRSltbindelay).max() + ) - def test_J1713(self): - log = logging.getLogger("TestJ1713.test_J1713") + def test_J1713_ECL(self): pint_resids_us = Residuals( - self.toasJ1713, self.modelJ1713, use_weighted_mean=False + self.toasJ1713, self.ECLmodelJ1713, use_weighted_mean=False ).time_resids.to(u.s) - diff = pint_resids_us.value - self.ltres - log.debug("Max diff %lf" % np.abs(diff - diff.mean()).max()) - assert np.all(np.abs(diff - diff.mean()) < 5e-7), "DDK J1713 TEST FAILED" + diff = pint_resids_us.value - self.ECLltres + print("Max diff %e" % np.abs(diff - diff.mean()).max()) + assert np.all(np.abs(diff - diff.mean()) < 5e-7), ( + "DDK J1713 ECL RESIDUAL TEST FAILED: max difference is %e" + % np.abs(diff - diff.mean()).max() + ) + + def test_J1713_ICRS(self): + pint_resids_us = Residuals( + self.toasJ1713, self.ICRSmodelJ1713, use_weighted_mean=False + ).time_resids.to(u.s) + diff = pint_resids_us.value - self.ICRSltres + print("Max diff %e" % np.abs(diff - diff.mean()).max()) + assert np.all(np.abs(diff - diff.mean()) < 5e-7), ( + "DDK J1713 ICRS RESIDUAL TEST FAILED: max difference is %e" + % np.abs(diff - diff.mean()).max() + ) def test_change_px(self): - self.modelJ1713.update_binary_object(toas=self.toasJ1713) - assert self.modelJ1713.binary_instance.PX.value == self.modelJ1713.PX.value - bdelay0 = self.modelJ1713.binary_instance.binary_delay() - b_time0 = self.modelJ1713.binary_instance.t + self.ECLmodelJ1713.update_binary_object(toas=self.toasJ1713) + assert ( + self.ECLmodelJ1713.binary_instance.PX.value == self.ECLmodelJ1713.PX.value + ) + bdelay0 = self.ECLmodelJ1713.binary_instance.binary_delay() + b_time0 = self.ECLmodelJ1713.binary_instance.t # Change PX value - self.modelJ1713.PX.value = 0.1 - self.modelJ1713.update_binary_object(None) - b_time1 = self.modelJ1713.binary_instance.t - assert self.modelJ1713.binary_instance.PX.value == 0.1 + self.ECLmodelJ1713.PX.value = 0.1 + self.ECLmodelJ1713.update_binary_object(None) + b_time1 = self.ECLmodelJ1713.binary_instance.t + assert self.ECLmodelJ1713.binary_instance.PX.value == 0.1 # The stand alone binary model's input time should not change assert np.all(b_time0 == b_time1) # Check if the time residual changed - bdelay1 = self.modelJ1713.binary_instance.binary_delay() + bdelay1 = self.ECLmodelJ1713.binary_instance.binary_delay() diff = bdelay0 - bdelay1 assert np.all(diff != 0) def test_J1713_deriv(self): - log = logging.getLogger("TestJ1713.derivative_test") - testp = tdu.get_derivative_params(self.modelJ1713) - delay = self.modelJ1713.delay(self.toasJ1713) + testp = tdu.get_derivative_params(self.ECLmodelJ1713) + delay = self.ECLmodelJ1713.delay(self.toasJ1713) for p in testp.keys(): # Only check the binary parameters - if p not in self.modelJ1713.binary_instance.binary_params: + if p not in self.ECLmodelJ1713.binary_instance.binary_params: continue if p in ["PX", "PMRA", "PMDEC"]: continue - par = getattr(self.modelJ1713, p) + par = getattr(self.ECLmodelJ1713, p) if isinstance(par, boolParameter): continue - log.debug("Runing derivative for %s", "d_phase_d_" + p) - ndf = self.modelJ1713.d_phase_d_param_num(self.toasJ1713, p, testp[p]) - adf = self.modelJ1713.d_phase_d_param(self.toasJ1713, delay, p) + print("Runing derivative for %s" % ("d_phase_d_" + p)) + ndf = self.ECLmodelJ1713.d_phase_d_param_num(self.toasJ1713, p, testp[p]) + adf = self.ECLmodelJ1713.d_phase_d_param(self.toasJ1713, delay, p) diff = adf - ndf if not np.all(diff.value) == 0.0: mean_der = (adf + ndf) / 2.0 @@ -124,7 +155,7 @@ def test_J1713_deriv(self): tol = 0.04 else: tol = 1e-3 - log.debug( + print( "derivative relative diff for %s, %lf" % ("d_phase_d_" + p, np.nanmax(relative_diff).value) ) @@ -133,16 +164,16 @@ def test_J1713_deriv(self): continue def test_K96(self): - modelJ1713 = copy.deepcopy(self.modelJ1713) + modelJ1713 = copy.deepcopy(self.ECLmodelJ1713) log = logging.getLogger("TestJ1713 Switch of K96") modelJ1713.K96.value = False res = Residuals( self.toasJ1713, modelJ1713, use_weighted_mean=False ).time_resids.to(u.s) - delay = self.modelJ1713.delay(self.toasJ1713) + delay = self.ECLmodelJ1713.delay(self.toasJ1713) testp = tdu.get_derivative_params(modelJ1713) for p in testp.keys(): - self.modelJ1713.d_phase_d_param(self.toasJ1713, delay, p) + self.ECLmodelJ1713.d_phase_d_param(self.toasJ1713, delay, p) @pytest.mark.xfail(reason="model builder does not reject invalid parameters but should") From 0159b85bdd2d345a27e3e438785aeb2b34da088e Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Thu, 21 Apr 2022 13:45:43 -0500 Subject: [PATCH 09/26] removed warnings about PINT vs. tempo issues --- tests/test_ddk.py | 4 ---- 1 file changed, 4 deletions(-) diff --git a/tests/test_ddk.py b/tests/test_ddk.py index 5396b7ee9..74622d0be 100644 --- a/tests/test_ddk.py +++ b/tests/test_ddk.py @@ -66,8 +66,6 @@ def setUpClass(cls): def test_J1713_ECL_binary_delay(self): # Calculate delays with PINT - # NOTE tempo and PINT has different definition of parameter KOM. So lower the - # threshold pint_binary_delay = self.ECLmodelJ1713.binarymodel_delay(self.toasJ1713, None) assert np.all(np.abs(pint_binary_delay.value + self.ECLltbindelay) < 5e-6), ( "DDK J1713 ECL BINARY DELAY TEST FAILED: max difference is %e" @@ -76,8 +74,6 @@ def test_J1713_ECL_binary_delay(self): def test_J1713_ICRS_binary_delay(self): # Calculate delays with PINT - # NOTE tempo and PINT has different definition of parameter KOM. So lower the - # threshold pint_binary_delay = self.ICRSmodelJ1713.binarymodel_delay(self.toasJ1713, None) assert np.all(np.abs(pint_binary_delay.value + self.ECLltbindelay) < 6e-6), ( "DDK J1713 ICRS BINARY DELAY TEST FAILED: max difference is %e" From 1e27d4ee9213d7fa5dfc3bc0b1179fa22cb99880 Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Thu, 21 Apr 2022 13:56:50 -0500 Subject: [PATCH 10/26] blackened --- tests/datafile/get_tempo2_result.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/datafile/get_tempo2_result.py b/tests/datafile/get_tempo2_result.py index 23408f344..d55564e54 100644 --- a/tests/datafile/get_tempo2_result.py +++ b/tests/datafile/get_tempo2_result.py @@ -1,7 +1,7 @@ """This is a script for getting tempo/tempo2/libstempo result for the propose of testing PINT """ -#from pint.utils import longdouble2str +# from pint.utils import longdouble2str try: import tempo2_utils as t2u From 5d925796090234781c6aa5e8dbaa930ff91092bb Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Mon, 25 Apr 2022 12:34:01 -0500 Subject: [PATCH 11/26] udpated docstrings to be correct for generic coordinates --- src/pint/models/binary_ddk.py | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/src/pint/models/binary_ddk.py b/src/pint/models/binary_ddk.py index ae15257c0..323cae665 100644 --- a/src/pint/models/binary_ddk.py +++ b/src/pint/models/binary_ddk.py @@ -81,6 +81,10 @@ def PMLONG_DDK(self): return self._parent.PMRA elif "AstrometryEcliptic" in self._parent.components: return self._parent.PMELONG + else: + raise TimingModelError( + "No valid AstrometryEcliptic or AstrometryEquatorial component found" + ) @property def PMLAT_DDK(self): @@ -88,6 +92,10 @@ def PMLAT_DDK(self): return self._parent.PMDEC elif "AstrometryEcliptic" in self._parent.components: return self._parent.PMELAT + else: + raise TimingModelError( + "No valid AstrometryEcliptic or AstrometryEquatorial component found" + ) def validate(self): """Validate parameters.""" @@ -107,6 +115,10 @@ def validate(self): raise MissingParameter( "DDK", "DDK model needs proper motion parameters." ) + else: + raise TimingModelError( + "No valid AstrometryEcliptic or AstrometryEquatorial component found" + ) if hasattr(self._parent, "PX"): if self._parent.PX.value <= 0.0 or self._parent.PX.value is None: From 562708ce6f0725b8eb7c3caa704828e0d024cfdf Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Mon, 25 Apr 2022 13:06:07 -0500 Subject: [PATCH 12/26] more docstring updates --- src/pint/models/binary_ddk.py | 7 +-- .../stand_alone_psr_binaries/DDK_model.py | 52 +++++++++++-------- 2 files changed, 33 insertions(+), 26 deletions(-) diff --git a/src/pint/models/binary_ddk.py b/src/pint/models/binary_ddk.py index 323cae665..3822aa44e 100644 --- a/src/pint/models/binary_ddk.py +++ b/src/pint/models/binary_ddk.py @@ -23,8 +23,8 @@ class BinaryDDK(BinaryDD): It supports all the parameters defined in :class:`pint.models.pulsar_binary.PulsarBinary` and :class:`pint.models.pulsar_binary.BinaryDDK` plus: - - KIN - inclination angle (deg) - - KOM - the longitude of the ascending node, Kopeikin (1995) Eq 9. OMEGA (deg) + - KIN - inclination angle :math:`i` (deg) + - KOM - the longitude of the ascending node, Kopeikin (1995) Eq 9 :math:`\Omega` (deg) - K96 - flag for Kopeikin binary model proper motion correction It also removes: @@ -42,7 +42,8 @@ class BinaryDDK(BinaryDD): References ---------- - KOPEIKIN. 1995, 1996 + * `Kopeikin (1995), ApJ, 439, L5 ` + * `Kopeikin (1996), ApJ, 467, L93 ` """ register = True diff --git a/src/pint/models/stand_alone_psr_binaries/DDK_model.py b/src/pint/models/stand_alone_psr_binaries/DDK_model.py index 17e90351a..c5be7b7fb 100644 --- a/src/pint/models/stand_alone_psr_binaries/DDK_model.py +++ b/src/pint/models/stand_alone_psr_binaries/DDK_model.py @@ -12,16 +12,19 @@ class DDKmodel(DDmodel): """DDK model, a Kopeikin method corrected DD model. - The main difference is that DDK model considers the annual parallax of earth and - the proper motion of the pulsar. - effects on the pulsar binary parameters. - Speical parameters are: + The main difference is that DDK model considers the effects on the pulsar binary parametersfrom the annual parallax of earth and the proper motion of the pulsar. + + Special parameters are: KIN - the inclination angle + the inclination angle :math:`i` KOM - the longitude of the ascending node, Kopeikin (1995) Eq 9. OMEGA + the longitude of the ascending node, Kopeikin (1995) Eq 9. :math:`\Omega` + References + ---------- + * `Kopeikin (1995), ApJ, 439, L5 ` + * `Kopeikin (1996), ApJ, 467, L93 ` """ def __init__(self, t=None, input_params=None): @@ -74,7 +77,7 @@ def psr_pos(self, val): long and lat are alpha and delta (if equatorial) or elong and elat (if ecliptic) described in - (Kopeikin 1995 Eq10) + (Kopeikin 1995 Eq 10) """ self._psr_pos = val # it appears that this is the vector K0 @@ -123,10 +126,11 @@ def SINI(self, val): # Update binary parameters due to the pulser proper motion def delta_kin_proper_motion(self): - """The time dependent inclination angle. - (KOPEIKIN. 1996 Eq 10.) - ki = KIN + d_KIN - d_KIN = (-PMRA_DDK * sin(KOM) + PMDEC_DDK * cos(KOM)) * (t-T0) + """The time dependent inclination angle + (Kopeikin 1996 Eq 10): + + - :math:`ki = KIN + \delta_{KIN}` + - :math:`\delta_{KIN} = (-\mu_{long} \sin(KOM) + \mu_{lat} \cos(KOM)) (t-T_0)` """ d_KIN = ( -self.PMLONG_DDK * self.sin_KOM + self.PMLAT_DDK * self.cos_KOM @@ -204,10 +208,11 @@ def d_kin_d_par(self, par): def delta_a1_proper_motion(self): """The correction on a1 (projected semi-major axis) due to the pulsar proper motion - (KOPEIKIN. 1996 Eq 8.) - d_x = a1 * cot(kin) * (-PMLONG_DDK * sin(KOM) + PMDEC_DDK * cos(KOM)) * (t-T0) - d_kin = (-PMLONG_DDK * sin(KOM) + PMDEC_DDK * cos(KOM)) * (t-T0) - d_x = a1 * d_kin * cot(kin) + (KOPEIKIN. 1996 Eq 8): + + - :math:`\delta_x = a_1 \cot(kin) (-\mu_{long}\sin(KOM) + \mu_{lat}\cos(KOM)) (t-T_0)` + - :math:`\delta_{kin} = (-\mu_{long} \sin(KOM) + \mu_{lat} \cos(KOM)) (t-T_0)` + - :math:`\delta_x = a_1 \delta_{kin} \cot(kin)` """ a1 = self.a1_k(False, False) kin = self.kin() @@ -256,8 +261,9 @@ def d_delta_a1_proper_motion_d_T0(self): def delta_omega_proper_motion(self): """The correction on omega (Longitude of periastron) due to the pulsar proper motion - (KOPEIKIN. 1996 Eq 9.) - d_omega = csc(i) * (PMLONG_DDK * cos(KOM) + PMDEC_DDK * sin(KOM)) * (t-T0) + (KOPEIKIN. 1996 Eq 9.): + + - :math:`\delta_{\Omega} = \csc(i) (\mu_{long}\cos(KOM) + \mu_{\lat} \sin(KOM)) (t-T_0)` """ kin = self.kin() sin_kin = np.sin(kin) @@ -315,7 +321,7 @@ def d_delta_omega_proper_motion_d_T0(self): def delta_I0(self): """ - Refernce: (Kopeikin 1995 Eq 15) + Reference: (Kopeikin 1995 Eq 15) """ return -self.obs_pos[:, 0] * self.sin_long + self.obs_pos[:, 1] * self.cos_long @@ -332,14 +338,14 @@ def delta_J0(self): def delta_sini_parallax(self): """Reference (Kopeikin 1995 Eq 18) - Computes:: + Computes: - x_obs = ap * sini_obs/c + - :math:`x_obs = \frac{a_p \sin(i)_{obs}}{c}` - Since ap and c will not be changed by parallax:: + Since :math:`a_p` and :math:`c` will not be changed by parallax: - x_obs = ap /c *(sini_intrisic + delta_sini) - delta_sini = sini_intrisic * coti_intrisic / d * (deltaI0 * sin_kom - deltaJ0 * cos_kom) + - :math:`x_{obs} = \frac{a_p}{c}(\sin(i)_{\rm intrisic} + \delta_{\sin(i)})` + - :math:`\delta_{\sin(i)} = \sin(i)_{\rm intrisic} \frac{\cot(i)_{\rm intrisic}}{d} (\delta_{I0} \sin KOM - \delta_{J0} \cos KOM)` """ PX_kpc = self.PX.to(u.kpc, equivalencies=u.parallax()) delta_sini = ( From a72ada49b668e2cd05b8928097c32f7673e903fc Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Mon, 25 Apr 2022 13:42:34 -0500 Subject: [PATCH 13/26] more math in docstrings --- src/pint/models/binary_ddk.py | 8 ++- .../stand_alone_psr_binaries/DDK_model.py | 61 +++++++++++++------ 2 files changed, 48 insertions(+), 21 deletions(-) diff --git a/src/pint/models/binary_ddk.py b/src/pint/models/binary_ddk.py index 3822aa44e..8341cf5f9 100644 --- a/src/pint/models/binary_ddk.py +++ b/src/pint/models/binary_ddk.py @@ -42,8 +42,12 @@ class BinaryDDK(BinaryDD): References ---------- - * `Kopeikin (1995), ApJ, 439, L5 ` - * `Kopeikin (1996), ApJ, 467, L93 ` + - Kopeikin (1995), ApJ, 439, L5 [1]_ + - Kopeikin (1996), ApJ, 467, L93 [2]_ + + .. [1] https://ui.adsabs.harvard.edu/abs/1995ApJ...439L...5K/abstract + .. [2] https://ui.adsabs.harvard.edu/abs/1996ApJ...467L..93K/abstract + """ register = True diff --git a/src/pint/models/stand_alone_psr_binaries/DDK_model.py b/src/pint/models/stand_alone_psr_binaries/DDK_model.py index c5be7b7fb..0857afdf9 100644 --- a/src/pint/models/stand_alone_psr_binaries/DDK_model.py +++ b/src/pint/models/stand_alone_psr_binaries/DDK_model.py @@ -17,14 +17,17 @@ class DDKmodel(DDmodel): Special parameters are: KIN - the inclination angle :math:`i` + the inclination angle: :math:`i` KOM - the longitude of the ascending node, Kopeikin (1995) Eq 9. :math:`\Omega` + the longitude of the ascending node, Kopeikin (1995) Eq 9: :math:`\Omega` References ---------- - * `Kopeikin (1995), ApJ, 439, L5 ` - * `Kopeikin (1996), ApJ, 467, L93 ` + - Kopeikin (1995), ApJ, 439, L5 [1]_ + - Kopeikin (1996), ApJ, 467, L93 [2]_ + + .. [1] https://ui.adsabs.harvard.edu/abs/1995ApJ...439L...5K/abstract + .. [2] https://ui.adsabs.harvard.edu/abs/1996ApJ...467L..93K/abstract """ def __init__(self, t=None, input_params=None): @@ -128,9 +131,13 @@ def SINI(self, val): def delta_kin_proper_motion(self): """The time dependent inclination angle (Kopeikin 1996 Eq 10): + + .. math:: - - :math:`ki = KIN + \delta_{KIN}` - - :math:`\delta_{KIN} = (-\mu_{long} \sin(KOM) + \mu_{lat} \cos(KOM)) (t-T_0)` + ki = KIN + \delta_{KIN} + + \delta_{KIN} = (-\mu_{long} \sin(KOM) + \mu_{lat} \cos(KOM)) (t-T_0) + """ d_KIN = ( -self.PMLONG_DDK * self.sin_KOM + self.PMLAT_DDK * self.cos_KOM @@ -208,11 +215,16 @@ def d_kin_d_par(self, par): def delta_a1_proper_motion(self): """The correction on a1 (projected semi-major axis) due to the pulsar proper motion - (KOPEIKIN. 1996 Eq 8): + (Kopeikin 1996 Eq 8): + + .. math:: - - :math:`\delta_x = a_1 \cot(kin) (-\mu_{long}\sin(KOM) + \mu_{lat}\cos(KOM)) (t-T_0)` - - :math:`\delta_{kin} = (-\mu_{long} \sin(KOM) + \mu_{lat} \cos(KOM)) (t-T_0)` - - :math:`\delta_x = a_1 \delta_{kin} \cot(kin)` + \delta_x = a_1 \cot(kin) (-\mu_{long}\sin(KOM) + \mu_{lat}\cos(KOM)) (t-T_0) + + \delta_{kin} = (-\mu_{long} \sin(KOM) + \mu_{lat} \cos(KOM)) (t-T_0) + + \delta_x = a_1 \delta_{kin} \cot(kin) + """ a1 = self.a1_k(False, False) kin = self.kin() @@ -261,9 +273,12 @@ def d_delta_a1_proper_motion_d_T0(self): def delta_omega_proper_motion(self): """The correction on omega (Longitude of periastron) due to the pulsar proper motion - (KOPEIKIN. 1996 Eq 9.): + (Kopeikin 1996 Eq 9): + + .. math:: - - :math:`\delta_{\Omega} = \csc(i) (\mu_{long}\cos(KOM) + \mu_{\lat} \sin(KOM)) (t-T_0)` + \delta_{\Omega} = \csc(i) (\mu_{long}\cos(KOM) + \mu_{lat} \sin(KOM)) (t-T_0) + """ kin = self.kin() sin_kin = np.sin(kin) @@ -321,12 +336,16 @@ def d_delta_omega_proper_motion_d_T0(self): def delta_I0(self): """ + :math:`\Delta_{I0}` + Reference: (Kopeikin 1995 Eq 15) """ return -self.obs_pos[:, 0] * self.sin_long + self.obs_pos[:, 1] * self.cos_long def delta_J0(self): """ + :math:`\Delta_{J0}` + Reference: (Kopeikin 1995 Eq 16) """ return ( @@ -336,16 +355,20 @@ def delta_J0(self): ) def delta_sini_parallax(self): - """Reference (Kopeikin 1995 Eq 18) - - Computes: + """Reference (Kopeikin 1995 Eq 18). Computes: - - :math:`x_obs = \frac{a_p \sin(i)_{obs}}{c}` + .. math:: + + x_{obs} = \\frac{a_p \sin(i)_{obs}}{c} Since :math:`a_p` and :math:`c` will not be changed by parallax: - - :math:`x_{obs} = \frac{a_p}{c}(\sin(i)_{\rm intrisic} + \delta_{\sin(i)})` - - :math:`\delta_{\sin(i)} = \sin(i)_{\rm intrisic} \frac{\cot(i)_{\rm intrisic}}{d} (\delta_{I0} \sin KOM - \delta_{J0} \cos KOM)` + .. math:: + + x_{obs} = \\frac{a_p}{c}(\sin(i)_{\\rm intrisic} + \delta_{\sin(i)}) + + \delta_{\sin(i)} = \sin(i)_{\\rm intrisic} \\frac{\cot(i)_{\\rm intrisic}}{d} (\Delta_{I0} \sin KOM - \Delta_{J0} \cos KOM) + """ PX_kpc = self.PX.to(u.kpc, equivalencies=u.parallax()) delta_sini = ( @@ -497,7 +520,7 @@ def d_delta_omega_parallax_d_T0(self): ) def a1_k(self, proper_motion=True, parallax=True): - """A function to compute Kopeikin corrected projected semi-major axis. + """Compute Kopeikin corrected projected semi-major axis. Parameters ---------- From 4703c8f630d634d2f5357a3c00a9e6a3b1a05b36 Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Mon, 25 Apr 2022 15:06:28 -0500 Subject: [PATCH 14/26] even more docs --- src/pint/models/binary_ddk.py | 18 +++++++++++++----- .../stand_alone_psr_binaries/DDK_model.py | 11 +++++++++-- 2 files changed, 22 insertions(+), 7 deletions(-) diff --git a/src/pint/models/binary_ddk.py b/src/pint/models/binary_ddk.py index 8341cf5f9..b960eb570 100644 --- a/src/pint/models/binary_ddk.py +++ b/src/pint/models/binary_ddk.py @@ -21,15 +21,19 @@ class BinaryDDK(BinaryDD): :class:`pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel`. It supports all the parameters defined in :class:`pint.models.pulsar_binary.PulsarBinary` - and :class:`pint.models.pulsar_binary.BinaryDDK` plus: + and :class:`pint.models.binary_dd.BinaryDD` plus: - - KIN - inclination angle :math:`i` (deg) - - KOM - the longitude of the ascending node, Kopeikin (1995) Eq 9 :math:`\Omega` (deg) - - K96 - flag for Kopeikin binary model proper motion correction + KIN + the inclination angle: :math:`i` + KOM + the longitude of the ascending node, Kopeikin (1995) Eq 9: :math:`\Omega` + K96 + flag for Kopeikin binary model proper motion correction It also removes: - - SINI - use KIN instead + SINI + use ``KIN`` instead Note ---- @@ -82,6 +86,8 @@ def __init__(self,): @property def PMLONG_DDK(self): + """Proper motion in longitude (RA or ecliptic longitude) + """ if "AstrometryEquatorial" in self._parent.components: return self._parent.PMRA elif "AstrometryEcliptic" in self._parent.components: @@ -93,6 +99,8 @@ def PMLONG_DDK(self): @property def PMLAT_DDK(self): + """Proper motion in latitude (Dec or ecliptic latitude) + """ if "AstrometryEquatorial" in self._parent.components: return self._parent.PMDEC elif "AstrometryEcliptic" in self._parent.components: diff --git a/src/pint/models/stand_alone_psr_binaries/DDK_model.py b/src/pint/models/stand_alone_psr_binaries/DDK_model.py index 0857afdf9..4b9f8b10f 100644 --- a/src/pint/models/stand_alone_psr_binaries/DDK_model.py +++ b/src/pint/models/stand_alone_psr_binaries/DDK_model.py @@ -16,10 +16,17 @@ class DDKmodel(DDmodel): Special parameters are: - KIN + KIN the inclination angle: :math:`i` - KOM + KOM the longitude of the ascending node, Kopeikin (1995) Eq 9: :math:`\Omega` + K96 + flag for Kopeikin binary model proper motion correction + + It also removes: + + SINI + use ``KIN`` instead References ---------- From d5e4cad975de03d018e30efb31769b11bdd2d4ab Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Thu, 28 Apr 2022 15:00:37 -0500 Subject: [PATCH 15/26] added user warning, updated CHANGELOG --- CHANGELOG.md | 1 + src/pint/models/binary_ddk.py | 5 ++++- src/pint/models/stand_alone_psr_binaries/DDK_model.py | 5 +++++ 3 files changed, 10 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 8a7cf8344..3993867a5 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -13,6 +13,7 @@ and this project, at least loosely, adheres to [Semantic Versioning](https://sem ### Fixed ### Changed - Changed logging to use `loguru` +- DDK model will now use ICRS or ECL coordinates depending on what the input model is ## [0.8.5] 2022-02-24 diff --git a/src/pint/models/binary_ddk.py b/src/pint/models/binary_ddk.py index b960eb570..1d58bd322 100644 --- a/src/pint/models/binary_ddk.py +++ b/src/pint/models/binary_ddk.py @@ -37,7 +37,7 @@ class BinaryDDK(BinaryDD): Note ---- - This model defines KOM with reference to north, either equatorial or ecliptic depending on how the model is defined + This model defines KOM with reference to north, either equatorial or ecliptic depending on how the model is defined. Using this model at the ~10ns level needs to be verified. Parameters supported: @@ -121,6 +121,9 @@ def validate(self): ) elif "AstrometryEcliptic" in self._parent.components: log.debug("Validating DDK model in ECL coordinates") + log.warning( + "Using the DDK model in ECL coordinates has not been verified below ~30 ns" + ) if ( "PMELONG" not in self._parent.params or "PMELAT" not in self._parent.params diff --git a/src/pint/models/stand_alone_psr_binaries/DDK_model.py b/src/pint/models/stand_alone_psr_binaries/DDK_model.py index 4b9f8b10f..55b29ce73 100644 --- a/src/pint/models/stand_alone_psr_binaries/DDK_model.py +++ b/src/pint/models/stand_alone_psr_binaries/DDK_model.py @@ -28,6 +28,11 @@ class DDKmodel(DDmodel): SINI use ``KIN`` instead + Notes + ----- + This model defines KOM with reference to north, either equatorial or ecliptic depending on how the model is defined. Using this model with ECL coordinates at the ~10ns level needs to be verified. + + References ---------- - Kopeikin (1995), ApJ, 439, L5 [1]_ From aa7bfee0d8ce30c58b439317c1ea8d170859be06 Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Fri, 29 Apr 2022 16:53:54 -0500 Subject: [PATCH 16/26] more blacken --- src/pint/models/binary_ddk.py | 10 ++++------ 1 file changed, 4 insertions(+), 6 deletions(-) diff --git a/src/pint/models/binary_ddk.py b/src/pint/models/binary_ddk.py index cd8ac9808..c7a69058a 100644 --- a/src/pint/models/binary_ddk.py +++ b/src/pint/models/binary_ddk.py @@ -48,10 +48,10 @@ class BinaryDDK(BinaryDD): ---------- - Kopeikin (1995), ApJ, 439, L5 [1]_ - Kopeikin (1996), ApJ, 467, L93 [2]_ - + .. [1] https://ui.adsabs.harvard.edu/abs/1995ApJ...439L...5K/abstract .. [2] https://ui.adsabs.harvard.edu/abs/1996ApJ...467L..93K/abstract - + """ register = True @@ -88,8 +88,7 @@ def __init__( @property def PMLONG_DDK(self): - """Proper motion in longitude (RA or ecliptic longitude) - """ + """Proper motion in longitude (RA or ecliptic longitude)""" if "AstrometryEquatorial" in self._parent.components: return self._parent.PMRA elif "AstrometryEcliptic" in self._parent.components: @@ -101,8 +100,7 @@ def PMLONG_DDK(self): @property def PMLAT_DDK(self): - """Proper motion in latitude (Dec or ecliptic latitude) - """ + """Proper motion in latitude (Dec or ecliptic latitude)""" if "AstrometryEquatorial" in self._parent.components: return self._parent.PMDEC elif "AstrometryEcliptic" in self._parent.components: From 7ddfc23e978ff2005279b2398cf0f84a9b455a17 Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Tue, 17 May 2022 09:59:28 -0500 Subject: [PATCH 17/26] fixed doc --- src/pint/models/stand_alone_psr_binaries/DDK_model.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/pint/models/stand_alone_psr_binaries/DDK_model.py b/src/pint/models/stand_alone_psr_binaries/DDK_model.py index 192ece1c7..f0ee17d12 100644 --- a/src/pint/models/stand_alone_psr_binaries/DDK_model.py +++ b/src/pint/models/stand_alone_psr_binaries/DDK_model.py @@ -12,7 +12,8 @@ class DDKmodel(DDmodel): """DDK model, a Kopeikin method corrected DD model. - The main difference is that DDK model considers the effects on the pulsar binary parametersfrom the annual parallax of earth and the proper motion of the pulsar. + + The main difference is that DDK model considers the effects on the pulsar binary parametersfrom the annual parallax of earth and the proper motion of the pulsar. Special parameters are: From d5b227fa220a4a81dd661f387100c96d14a3c96d Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Wed, 18 May 2022 11:31:03 -0500 Subject: [PATCH 18/26] added ddk simulation test --- tests/test_ddk.py | 43 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 43 insertions(+) diff --git a/tests/test_ddk.py b/tests/test_ddk.py index 74622d0be..fbd5068af 100644 --- a/tests/test_ddk.py +++ b/tests/test_ddk.py @@ -15,10 +15,13 @@ from utils import verify_stand_alone_binary_parameter_updates import pint.models.model_builder as mb +from pint.models import get_model +import pint.simulation import pint.toa as toa from pint.models.parameter import boolParameter from pint.models.timing_model import MissingParameter, TimingModelError from pint.residuals import Residuals +import pint.fitter temp_par_str = """ PSR J1713+0747 @@ -172,6 +175,46 @@ def test_K96(self): self.ECLmodelJ1713.d_phase_d_param(self.toasJ1713, delay, p) +def test_ddk_ECL_ICRS(): + mECL = get_model(StringIO(temp_par_str + "\n KIN 71.969 1 0.562")) + print( + f"Simulated TOAs in ECL with (KIN,KOM) = ({mECL.KIN.quantity},{mECL.KOM.quantity})" + ) + tECL = pint.simulation.make_fake_toas_uniform( + 50000, 60000, 100, mECL, error=0.5 * u.us, add_noise=True + ) + prefit = Residuals(tECL, mECL) + print(f"Prefit chi^2 in ECL {prefit.calc_chi2()}") + # get proper motion vector and normalize + pm_ECL = np.array( + [mECL.coords_as_ECL().pm_lon_coslat.value, mECL.coords_as_ECL().pm_lat.value] + ) + pm_ECL /= np.sqrt(np.dot(pm_ECL, pm_ECL)) + + mICRS = mECL.as_ICRS() + pm_ICRS = np.array( + [mICRS.coords_as_ICRS().pm_ra_cosdec.value, mICRS.coords_as_ICRS().pm_dec.value] + ) + pm_ICRS /= np.sqrt(np.dot(pm_ICRS, pm_ICRS)) + # get the angle between proper motion vectors, which should be the difference between KOMs + angle = np.arccos(np.dot(pm_ECL, pm_ICRS)) * u.rad + + rICRS = Residuals(tECL, mICRS) + print( + f"Prefit chi^2 in ICRS with the same KOM ({mICRS.KOM.quantity}) {rICRS.calc_chi2()}" + ) + mICRS_newKOM = copy.deepcopy(mICRS) + mICRS_newKOM.KOM.quantity -= angle + rICRS_newKOM = Residuals(tECL, mICRS_newKOM) + print( + f"Change KOM by {angle.to(u.deg)} to {mICRS_newKOM.KOM.quantity}, now chi^2 in ICRS is {rICRS_newKOM.calc_chi2()}" + ) + # fitting with the wrong KOM should be bad + assert rICRS.calc_chi2() - prefit.calc_chi2() > 10 + # and with the new KOM they should be close + assert np.abs(rICRS_newKOM.calc_chi2() - prefit.calc_chi2()) < 2 + + @pytest.mark.xfail(reason="model builder does not reject invalid parameters but should") def test_sini_from_par(): test_par_str = temp_par_str + "\n SINI 0.8 1 0.562" From c4e672b335eaeebd20b124a63e0ffe25d34a81a9 Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Wed, 18 May 2022 16:21:36 -0500 Subject: [PATCH 19/26] now transforming model also transforms KOM --- src/pint/models/timing_model.py | 43 ++++++++++++++++++++++++++++++++- tests/test_ddk.py | 9 +++++-- 2 files changed, 49 insertions(+), 3 deletions(-) diff --git a/src/pint/models/timing_model.py b/src/pint/models/timing_model.py index 58c935828..3ea2da95f 100644 --- a/src/pint/models/timing_model.py +++ b/src/pint/models/timing_model.py @@ -36,8 +36,9 @@ import astropy.time as time import astropy.units as u import numpy as np -from astropy import log from astropy.utils.decorators import lazyproperty +import astropy.coordinates as coords +from pint.pulsar_ecliptic import OBL, PulsarEcliptic from scipy.optimize import brentq from loguru import logger as log @@ -2287,6 +2288,11 @@ def as_ECL(self, epoch=None, ecl="IERS2010"): ------- pint.models.timing_model.TimingModel In PulsarEcliptic frame + + Notes + ----- + For the ``DDK`` model, the ``KOM`` vector is also transformed + """ if "AstrometryEquatorial" in self.components: astrometry_model_type = "AstrometryEquatorial" @@ -2299,6 +2305,22 @@ def as_ECL(self, epoch=None, ecl="IERS2010"): new_model = copy.deepcopy(self) new_model.remove_component(astrometry_model_type) new_model.add_component(new_astrometry_model_component) + + if "BinaryDDK" in self.components and "AstrometryEquatorial" in self.components: + c = coords.SkyCoord( + lon=new_model.ELONG.quantity, + lat=new_model.ELAT.quantity, + obstime=self.POSEPOCH.quantity, + pm_lon_coslat=np.sin(self.KOM.quantity) * u.mas / u.yr, + pm_lat=np.cos(self.KOM.quantity) * u.mas / u.yr, + obliquity=OBL[new_model.ECL.value], + frame=PulsarEcliptic, + ) + c_ICRS = c.transform_to(coords.ICRS) + new_model.KOM.quantity = ( + np.arctan2(c_ICRS.pm_ra_cosdec.value, c_ICRS.pm_dec.value) * u.rad + ).to(self.KOM.units) + return new_model def as_ICRS(self, epoch=None): @@ -2314,6 +2336,10 @@ def as_ICRS(self, epoch=None): ------- pint.models.timing_model.TimingModel In ICRS frame + + Notes + ----- + For the ``DDK`` model, the ``KOM`` vector is also transformed """ if "AstrometryEquatorial" in self.components: astrometry_model_type = "AstrometryEquatorial" @@ -2326,6 +2352,21 @@ def as_ICRS(self, epoch=None): new_model = copy.deepcopy(self) new_model.remove_component(astrometry_model_type) new_model.add_component(new_astrometry_model_component) + + if "BinaryDDK" in self.components and "AstrometryEcliptic" in self.components: + c = coords.SkyCoord( + ra=new_model.RAJ.quantity, + dec=new_model.DECJ.quantity, + obstime=self.POSEPOCH.quantity, + pm_ra_cosdec=np.sin(self.KOM.quantity) * u.mas / u.yr, + pm_dec=np.cos(self.KOM.quantity) * u.mas / u.yr, + frame=coords.ICRS, + ) + c_ECL = c.transform_to(PulsarEcliptic(ecl=self.ECL.value)) + new_model.KOM.quantity = ( + np.arctan2(c_ECL.pm_lon_coslat.value, c_ECL.pm_lat.value) * u.rad + ).to(self.KOM.units) + return new_model diff --git a/tests/test_ddk.py b/tests/test_ddk.py index fbd5068af..1ada661bd 100644 --- a/tests/test_ddk.py +++ b/tests/test_ddk.py @@ -199,12 +199,13 @@ def test_ddk_ECL_ICRS(): # get the angle between proper motion vectors, which should be the difference between KOMs angle = np.arccos(np.dot(pm_ECL, pm_ICRS)) * u.rad + new_KOM = mICRS.KOM.quantity + mICRS.KOM.quantity = mECL.KOM.quantity rICRS = Residuals(tECL, mICRS) print( f"Prefit chi^2 in ICRS with the same KOM ({mICRS.KOM.quantity}) {rICRS.calc_chi2()}" ) - mICRS_newKOM = copy.deepcopy(mICRS) - mICRS_newKOM.KOM.quantity -= angle + mICRS_newKOM = mECL.as_ICRS() rICRS_newKOM = Residuals(tECL, mICRS_newKOM) print( f"Change KOM by {angle.to(u.deg)} to {mICRS_newKOM.KOM.quantity}, now chi^2 in ICRS is {rICRS_newKOM.calc_chi2()}" @@ -214,6 +215,10 @@ def test_ddk_ECL_ICRS(): # and with the new KOM they should be close assert np.abs(rICRS_newKOM.calc_chi2() - prefit.calc_chi2()) < 2 + # check that round-trip is OK + mECL_transformed = mICRS_newKOM.as_ECL() + assert np.isclose(mECL_transformed.KOM.quantity, mECL.KOM.quantity) + @pytest.mark.xfail(reason="model builder does not reject invalid parameters but should") def test_sini_from_par(): From 55f6adb21c12b27413f1b9478bc028332d25b4f7 Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Thu, 19 May 2022 09:08:46 -0500 Subject: [PATCH 20/26] changed log.warning to warnings.warn for DDK SINI setting --- src/pint/models/stand_alone_psr_binaries/DDK_model.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/pint/models/stand_alone_psr_binaries/DDK_model.py b/src/pint/models/stand_alone_psr_binaries/DDK_model.py index f0ee17d12..538ec9713 100644 --- a/src/pint/models/stand_alone_psr_binaries/DDK_model.py +++ b/src/pint/models/stand_alone_psr_binaries/DDK_model.py @@ -4,6 +4,7 @@ import astropy.units as u import numpy as np from loguru import logger as log +import warnings from pint import GMsun, Tsun, ls @@ -129,7 +130,7 @@ def SINI(self): @SINI.setter def SINI(self, val): - log.warning( + warnings.warn( "DDK model uses KIN as inclination angle. SINI will not be " "used. This happens every time a DDK model is constructed." ) From f4f3ef2fe5cedced2f74478838be3110b4aa8526 Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Fri, 20 May 2022 10:45:23 -0500 Subject: [PATCH 21/26] fixed error in observatory position reference frame --- src/pint/models/astrometry.py | 10 +++++++-- src/pint/models/binary_ddk.py | 14 +++++++++---- src/pint/models/pulsar_binary.py | 21 +++++++++++++++++-- .../stand_alone_psr_binaries/DDK_model.py | 14 +++++++++++-- tests/test_ddk.py | 8 ++++--- 5 files changed, 54 insertions(+), 13 deletions(-) diff --git a/src/pint/models/astrometry.py b/src/pint/models/astrometry.py index 3e30e7e74..726368275 100644 --- a/src/pint/models/astrometry.py +++ b/src/pint/models/astrometry.py @@ -63,13 +63,19 @@ def ssb_to_psb_xyz_ICRS(self, epoch=None): # TODO: would it be better for this to return a 6-vector (pos, vel)? return self.coords_as_ICRS(epoch=epoch).cartesian.xyz.transpose() - def ssb_to_psb_xyz_ECL(self, epoch=None): + def ssb_to_psb_xyz_ECL(self, epoch=None, ecl=None): """Returns unit vector(s) from SSB to pulsar system barycenter under Ecliptic coordinates. If epochs (MJD) are given, proper motion is included in the calculation. + + Parameters + ---------- + epoch : float, optional + ecl : str, optional + Obliquity (IERS2010 by default) """ # TODO: would it be better for this to return a 6-vector (pos, vel)? - return self.coords_as_ECL(epoch=epoch).cartesian.xyz.transpose() + return self.coords_as_ECL(epoch=epoch, ecl=ecl).cartesian.xyz.transpose() def sun_angle(self, toas, heliocenter=True, also_distance=False): """Compute the pulsar-observatory-Sun angle. diff --git a/src/pint/models/binary_ddk.py b/src/pint/models/binary_ddk.py index 246b22427..215003e5a 100644 --- a/src/pint/models/binary_ddk.py +++ b/src/pint/models/binary_ddk.py @@ -18,6 +18,15 @@ class BinaryDDK(BinaryDD): of the system from Earth, the finite size of the system, and the interaction of these with the proper motion. + From Kopeikin (1995) this includes :math:`\Delta_{\pi M}` (Equation 17), the mixed annual-orbital parallax term, which changes :math:`a_1` and :math:`\omega` + (:meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_a1_parallax` and :meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_omega_parallax`). + + It does not include :math:`\Delta_{\pi P}`, the pure pulsar orbital parallax term (Equation 14). + + From Kopeikin (1996) this includes apparent changes in :math:`\omega`, :math:`a_1`, and :math:`i` due to the proper motion + (:meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_omega_proper_motion`, :meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_a1_proper_motion`, + :meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_kin_proper_motion`) (Equations 8, 9, 10). + The actual calculations for this are done in :class:`pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel`. @@ -38,7 +47,7 @@ class BinaryDDK(BinaryDD): Note ---- - This model defines KOM with reference to north, either equatorial or ecliptic depending on how the model is defined. Using this model at the ~10ns level needs to be verified. + This model defines KOM with reference to north, either equatorial or ecliptic depending on how the model is defined. Parameters supported: @@ -122,9 +131,6 @@ def validate(self): ) elif "AstrometryEcliptic" in self._parent.components: log.debug("Validating DDK model in ECL coordinates") - log.warning( - "Using the DDK model in ECL coordinates has not been verified below ~30 ns" - ) if ( "PMELONG" not in self._parent.params or "PMELAT" not in self._parent.params diff --git a/src/pint/models/pulsar_binary.py b/src/pint/models/pulsar_binary.py index a9f8737a5..22aa9276a 100644 --- a/src/pint/models/pulsar_binary.py +++ b/src/pint/models/pulsar_binary.py @@ -7,6 +7,7 @@ import astropy.units as u import numpy as np from astropy.time import Time +from astropy.coordinates import SkyCoord from loguru import logger as log from pint import ls @@ -14,6 +15,7 @@ from pint.models.stand_alone_psr_binaries import binary_orbits as bo from pint.models.timing_model import DelayComponent, MissingParameter, UnknownParameter from pint.utils import taylor_horner_deriv +from pint.pulsar_ecliptic import PulsarEcliptic class PulsarBinary(DelayComponent): @@ -269,6 +271,11 @@ def update_binary_object(self, toas, acc_delay=None): the standard barycentering. The stand alone binary receives the input TOAs - acc_delay. + Notes + ----- + The values for ``obs_pos`` (the observatory position wrt the Solar System Barycenter) and ``psr_pos`` + (the pulsar position wrt the Solar System Barycenter) are both computed in the same reference frame, ICRS or ECL depending on the model. + Warns ----- If passing 'None' to 'toa' argument, the stand alone binary model will use @@ -291,14 +298,24 @@ def update_binary_object(self, toas, acc_delay=None): else: self.barycentric_time = tbl["tdbld"] * u.day - acc_delay updates["barycentric_toa"] = self.barycentric_time - updates["obs_pos"] = tbl["ssb_obs_pos"].quantity if "AstrometryEquatorial" in self._parent.components: + # it's already in ICRS + updates["obs_pos"] = tbl["ssb_obs_pos"].quantity updates["psr_pos"] = self._parent.ssb_to_psb_xyz_ICRS( epoch=tbl["tdbld"].astype(np.float64) ) elif "AstrometryEcliptic" in self._parent.components: + # convert from ICRS to ECL + obs_pos = SkyCoord( + tbl["ssb_obs_pos"].quantity, + representation_type="cartesian", + frame="icrs", + ) + updates["obs_pos"] = obs_pos.transform_to( + PulsarEcliptic(ecl=self._parent.ECL.value) + ).cartesian.xyz.transpose() updates["psr_pos"] = self._parent.ssb_to_psb_xyz_ECL( - epoch=tbl["tdbld"].astype(np.float64) + epoch=tbl["tdbld"].astype(np.float64), ecl=self._parent.ECL.value ) for par in self.binary_instance.binary_params: if par in self.binary_instance.param_aliases.keys(): diff --git a/src/pint/models/stand_alone_psr_binaries/DDK_model.py b/src/pint/models/stand_alone_psr_binaries/DDK_model.py index 538ec9713..5fc6838be 100644 --- a/src/pint/models/stand_alone_psr_binaries/DDK_model.py +++ b/src/pint/models/stand_alone_psr_binaries/DDK_model.py @@ -14,7 +14,17 @@ class DDKmodel(DDmodel): """DDK model, a Kopeikin method corrected DD model. - The main difference is that DDK model considers the effects on the pulsar binary parametersfrom the annual parallax of earth and the proper motion of the pulsar. + The main difference is that DDK model considers the effects on the pulsar binary parameters from the annual parallax of earth and the proper motion of the pulsar. + + From Kopeikin (1995) this includes :math:`\Delta_{\pi M}` (Equation 17), the mixed annual-orbital parallax term, which changes :math:`a_1` and :math:`\omega` + (:meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_a1_parallax` and :meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_omega_parallax`). + + It does not include :math:`\Delta_{\pi P}`, the pure pulsar orbital parallax term (Equation 14). + + From Kopeikin (1996) this includes apparent changes in :math:`\omega`, :math:`a_1`, and :math:`i` due to the proper motion + (:meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_omega_proper_motion`, :meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_a1_proper_motion`, + :meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_kin_proper_motion`) (Equations 8, 9, 10). + Special parameters are: @@ -32,7 +42,7 @@ class DDKmodel(DDmodel): Notes ----- - This model defines KOM with reference to north, either equatorial or ecliptic depending on how the model is defined. Using this model with ECL coordinates at the ~10ns level needs to be verified. + This model defines KOM with reference to north, either equatorial or ecliptic depending on how the model is defined. References diff --git a/tests/test_ddk.py b/tests/test_ddk.py index cc931996b..edd9efae5 100644 --- a/tests/test_ddk.py +++ b/tests/test_ddk.py @@ -72,6 +72,7 @@ def setUpClass(cls): def test_J1713_ECL_binary_delay(self): # Calculate delays with PINT pint_binary_delay = self.ECLmodelJ1713.binarymodel_delay(self.toasJ1713, None) + print(f"{np.abs(pint_binary_delay.value + self.ECLltbindelay).max()}") assert np.all(np.abs(pint_binary_delay.value + self.ECLltbindelay) < 5e-6), ( "DDK J1713 ECL BINARY DELAY TEST FAILED: max difference is %e" % np.abs(pint_binary_delay.value + self.ECLltbindelay).max() @@ -80,6 +81,7 @@ def test_J1713_ECL_binary_delay(self): def test_J1713_ICRS_binary_delay(self): # Calculate delays with PINT pint_binary_delay = self.ICRSmodelJ1713.binarymodel_delay(self.toasJ1713, None) + print(f"{np.abs(pint_binary_delay.value + self.ECLltbindelay).max()}") assert np.all(np.abs(pint_binary_delay.value + self.ECLltbindelay) < 6e-6), ( "DDK J1713 ICRS BINARY DELAY TEST FAILED: max difference is %e" % np.abs(pint_binary_delay.value + self.ICRSltbindelay).max() @@ -91,7 +93,7 @@ def test_J1713_ECL(self): ).time_resids.to(u.s) diff = pint_resids_us.value - self.ECLltres print("Max diff %e" % np.abs(diff - diff.mean()).max()) - assert np.all(np.abs(diff - diff.mean()) < 5e-7), ( + assert np.all(np.abs(diff - diff.mean()) < 5e-8), ( "DDK J1713 ECL RESIDUAL TEST FAILED: max difference is %e" % np.abs(diff - diff.mean()).max() ) @@ -102,7 +104,7 @@ def test_J1713_ICRS(self): ).time_resids.to(u.s) diff = pint_resids_us.value - self.ICRSltres print("Max diff %e" % np.abs(diff - diff.mean()).max()) - assert np.all(np.abs(diff - diff.mean()) < 5e-7), ( + assert np.all(np.abs(diff - diff.mean()) < 5e-8), ( "DDK J1713 ICRS RESIDUAL TEST FAILED: max difference is %e" % np.abs(diff - diff.mean()).max() ) @@ -215,7 +217,7 @@ def test_ddk_ECL_ICRS(): # fitting with the wrong KOM should be bad assert rICRS.calc_chi2() - prefit.calc_chi2() > 10 # and with the new KOM they should be close - assert np.abs(rICRS_newKOM.calc_chi2() - prefit.calc_chi2()) < 2 + assert np.isclose(rICRS_newKOM.calc_chi2(), prefit.calc_chi2()) # check that round-trip is OK mECL_transformed = mICRS_newKOM.as_ECL() From 6ba52fd94b4d4b15f6ec92d02c6654cb69f673d2 Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Mon, 23 May 2022 17:32:55 -0500 Subject: [PATCH 22/26] updated libstempo test files to include more data --- ...ANOGrav_11yv0_short.gls.ICRS.par.libstempo | 4004 ++++++++--------- ...747_NANOGrav_11yv0_short.gls.par.libstempo | 4004 ++++++++--------- tests/datafile/make_J1713_libstempo.py | 10 +- tests/test_ddk.py | 16 +- 4 files changed, 4025 insertions(+), 4009 deletions(-) diff --git a/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par.libstempo b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par.libstempo index 128bde4b2..8e8d77d55 100644 --- a/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par.libstempo +++ b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par.libstempo @@ -1,2002 +1,2002 @@ -# Created using libstempo on 2022-04-21T13:37:37.949886 -# Residual BinaryDelay --8.258987e-06 -1.403934e+01 --8.637769e-06 -1.403934e+01 --8.595102e-06 -1.403934e+01 --8.268503e-06 -1.403934e+01 --8.677039e-06 -1.403934e+01 --8.482450e-06 -1.403934e+01 --8.428119e-06 -1.403934e+01 --8.661384e-06 -1.403934e+01 --8.159534e-06 -1.403934e+01 --8.309635e-06 -1.403934e+01 --8.424743e-06 -1.403934e+01 --8.780789e-06 -1.403934e+01 --8.479381e-06 -1.403934e+01 --8.303189e-06 -1.403934e+01 --8.253769e-06 -1.403934e+01 --8.605846e-06 -1.403934e+01 --7.463250e-06 -1.404926e+01 --7.993667e-06 -1.404926e+01 --8.614617e-06 -1.404926e+01 --7.611202e-06 -1.404926e+01 --8.781887e-06 -1.404926e+01 --8.065782e-06 -1.404926e+01 --8.175365e-06 -1.404926e+01 --8.409264e-06 -1.404926e+01 --8.410492e-06 -1.404926e+01 --8.442108e-06 -1.404926e+01 --7.785552e-06 -1.404926e+01 --8.511173e-06 -1.404926e+01 --7.945169e-06 -1.404926e+01 --7.914780e-06 -1.404926e+01 --8.103845e-06 -1.404926e+01 --7.960209e-06 -1.404926e+01 --8.283535e-06 -1.407039e+01 --8.273405e-06 -1.407039e+01 --8.280772e-06 -1.407039e+01 --8.307784e-06 -1.407039e+01 --8.318527e-06 -1.407039e+01 --8.284762e-06 -1.407039e+01 --8.479065e-06 -1.407039e+01 --8.165664e-06 -1.407039e+01 --8.238719e-06 -1.407039e+01 --8.204033e-06 -1.407039e+01 --8.234115e-06 -1.407039e+01 --8.283535e-06 -1.407039e+01 --8.200043e-06 -1.407039e+01 --8.207717e-06 -1.407039e+01 --8.285990e-06 -1.407039e+01 --8.356590e-06 -1.407039e+01 --8.246279e-06 -1.679048e+01 --8.038164e-06 -1.679048e+01 --8.073464e-06 -1.679048e+01 --8.091881e-06 -1.679048e+01 --8.388706e-06 -1.679048e+01 --8.337138e-06 -1.679048e+01 --8.150816e-06 -1.679048e+01 --8.318720e-06 -1.679048e+01 --8.141301e-06 -1.679048e+01 --8.420936e-06 -1.679048e+01 --8.261627e-06 -1.679048e+01 --8.142528e-06 -1.679048e+01 --8.213742e-06 -1.679048e+01 --7.381300e-06 -1.679048e+01 --8.278816e-06 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2.212356e+01 --4.492530e-06 2.212356e+01 --4.348568e-06 2.212356e+01 --4.389393e-06 2.212356e+01 --4.428070e-06 2.212356e+01 --4.362074e-06 2.212356e+01 --4.468895e-06 2.212356e+01 --4.441576e-06 2.212356e+01 --4.438585e-06 2.210069e+01 --4.278678e-06 2.210069e+01 --4.347113e-06 2.210069e+01 --4.385175e-06 2.210069e+01 --4.674633e-06 2.210069e+01 --4.380571e-06 2.210069e+01 --4.241536e-06 2.210069e+01 --4.488926e-06 2.210069e+01 --4.020222e-06 2.210069e+01 --4.269776e-06 2.210069e+01 --4.253814e-06 2.210069e+01 --4.405434e-06 2.210069e+01 --4.476954e-06 2.210069e+01 --4.418633e-06 2.210069e+01 --4.433674e-06 2.210069e+01 --4.440734e-06 2.210069e+01 --4.409750e-06 2.205991e+01 --4.647640e-06 2.205991e+01 --4.693376e-06 2.205991e+01 --4.034360e-06 2.205991e+01 --4.571822e-06 2.205991e+01 --4.572129e-06 2.205991e+01 --3.780509e-06 2.205991e+01 --4.790680e-06 2.205991e+01 --4.003665e-06 2.205991e+01 --4.980976e-06 2.205991e+01 --4.532839e-06 2.205991e+01 --4.317664e-06 2.205991e+01 --3.736308e-06 2.205991e+01 --4.233267e-06 2.205991e+01 --4.266402e-06 2.205991e+01 --5.241860e-06 2.203707e+01 --5.094231e-06 2.203707e+01 --4.034026e-06 2.203707e+01 --4.628888e-06 2.203707e+01 --3.987062e-06 2.203707e+01 --4.437364e-06 2.203707e+01 --4.796178e-06 2.203707e+01 --4.786662e-06 2.203707e+01 --4.579775e-06 2.203707e+01 --4.602183e-06 2.203707e+01 --4.624284e-06 2.203707e+01 --4.478496e-06 2.203707e+01 --4.550614e-06 2.203707e+01 --6.060185e-06 2.203707e+01 --4.857569e-06 2.203707e+01 -2.829164e-06 3.172408e+01 -2.729404e-06 3.172408e+01 -3.184928e-06 3.172408e+01 -2.775447e-06 3.172408e+01 -2.664943e-06 3.172408e+01 -2.918185e-06 3.172408e+01 -2.950108e-06 3.172408e+01 -3.016103e-06 3.172408e+01 -3.240794e-06 3.172408e+01 -2.850655e-06 3.172408e+01 -2.631485e-06 3.172408e+01 -2.916957e-06 3.172408e+01 -2.851269e-06 3.172408e+01 -3.162828e-06 3.172408e+01 -2.619207e-06 3.172408e+01 -3.554628e-06 3.173400e+01 -2.506984e-06 3.173400e+01 -3.693985e-06 3.173400e+01 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-5.452731e-06 7.697707e+00 -1.628872e-06 7.697707e+00 -2.567867e-06 7.697707e+00 -4.455204e-07 7.697707e+00 -5.562314e-06 7.697707e+00 -6.580831e-06 7.697707e+00 -2.938996e-06 7.697707e+00 -5.682947e-06 7.697707e+00 --2.500121e-06 7.697707e+00 -1.248534e-06 7.697707e+00 -2.166678e-06 7.697707e+00 -4.327416e-06 7.728054e+00 -4.318514e-06 7.728054e+00 -6.013580e-06 7.728054e+00 -3.381361e-06 7.728054e+00 --1.653182e-07 7.728054e+00 -5.341022e-06 7.728054e+00 -4.444059e-06 7.728054e+00 -3.856241e-06 7.728054e+00 -8.344370e-06 7.728054e+00 -1.172435e-05 7.728054e+00 -4.225200e-06 7.728054e+00 --3.287885e-06 1.549425e+01 --2.835178e-06 1.549425e+01 --2.439125e-06 1.549425e+01 --2.509161e-06 1.549425e+01 --2.957552e-06 1.549425e+01 --2.204405e-06 1.549425e+01 --4.903788e-07 1.549425e+01 --8.242951e-07 1.549425e+01 --3.544224e-06 1.549425e+01 --1.884835e-06 1.549425e+01 -3.347101e-06 1.549425e+01 --5.413826e-06 1.549425e+01 --2.052432e-06 1.549425e+01 --5.566308e-07 1.549425e+01 --2.523895e-06 1.549425e+01 --4.535342e-06 1.549425e+01 --6.076543e-06 1.546682e+01 --2.453037e-06 1.546682e+01 --2.571874e-06 1.546682e+01 --1.758441e-06 1.546682e+01 --2.698953e-06 1.546682e+01 --2.008279e-06 1.546682e+01 --3.476734e-06 1.546682e+01 --2.186972e-06 1.546682e+01 --1.782361e-06 1.546682e+01 --2.515986e-06 1.546682e+01 --1.872958e-06 1.546682e+01 --2.448126e-06 1.546682e+01 --2.388907e-06 1.546682e+01 -4.082995e-06 1.546682e+01 --2.676830e-06 1.546682e+01 -3.244982e-07 1.546682e+01 --1.041468e-06 1.281068e+01 --2.313427e-06 1.281068e+01 -3.990290e-07 1.281068e+01 --4.737080e-06 1.281068e+01 -3.075566e-07 1.281068e+01 --8.339377e-06 1.281068e+01 --8.350735e-06 1.281068e+01 --8.975062e-07 1.281068e+01 --2.290426e-06 1.281068e+01 --3.088467e-06 1.281068e+01 --2.943584e-06 1.281068e+01 --3.450980e-06 1.281068e+01 --3.412137e-06 1.277912e+01 --4.204673e-06 1.277912e+01 -7.666212e-07 1.277912e+01 --4.406322e-06 1.277912e+01 --2.376185e-06 1.277912e+01 --5.133170e-06 1.277912e+01 --1.542230e-06 1.277912e+01 --1.144724e-06 1.277912e+01 --3.655838e-06 1.277912e+01 --3.379907e-06 1.277912e+01 --1.973788e-06 1.277912e+01 --2.334766e-06 1.277912e+01 -2.316367e-07 -2.810895e+01 --8.856137e-07 -2.810895e+01 -2.886339e-07 -2.810895e+01 -5.923082e-07 -2.810895e+01 -9.025535e-07 -2.810895e+01 -3.458788e-06 -2.810895e+01 --9.645863e-07 -2.810895e+01 -7.972681e-07 -2.810895e+01 --1.292670e-07 -2.810895e+01 --1.466052e-05 -2.810895e+01 -1.769024e-07 -2.810895e+01 -3.084608e-07 -2.810895e+01 --3.973237e-07 -2.810895e+01 --3.090574e-08 -2.810895e+01 -1.450881e-06 -2.810895e+01 -1.159349e-06 -2.810895e+01 -1.345882e-06 -2.653531e+01 -1.252261e-06 -2.653531e+01 -8.335630e-07 -2.653531e+01 -9.677145e-07 -2.653531e+01 -1.105230e-06 -2.653531e+01 -7.470018e-07 -2.653531e+01 -1.116587e-06 -2.653531e+01 -3.267812e-07 -2.653531e+01 -1.006391e-06 -2.653531e+01 -8.866661e-07 -2.653531e+01 -8.946469e-07 -2.653531e+01 -5.907620e-07 -2.653531e+01 --2.289098e-07 2.810854e+01 --1.609859e-06 2.810854e+01 -1.679070e-06 2.810854e+01 --2.712695e-07 2.810854e+01 --2.328145e-06 2.810854e+01 -3.058112e-07 2.810854e+01 -1.429237e-06 2.810854e+01 --1.257903e-07 2.810854e+01 --8.900619e-07 2.810854e+01 --6.780427e-06 2.810854e+01 --2.177135e-06 2.810854e+01 --6.220907e-07 2.810854e+01 --5.157592e-06 2.810854e+01 --8.357651e-07 2.810854e+01 -1.386877e-06 2.810854e+01 --1.658961e-06 2.810854e+01 --2.364008e-06 2.266363e+01 --1.334207e-06 2.266363e+01 --7.274863e-06 2.266363e+01 --4.351491e-06 2.266363e+01 --3.745886e-06 2.266363e+01 --2.800190e-06 2.266363e+01 --4.677784e-06 2.266363e+01 --2.019620e-06 2.266363e+01 --4.430686e-06 2.266363e+01 -1.003804e-06 2.266363e+01 --2.703335e-07 2.266363e+01 --4.571209e-06 3.946064e+00 --3.702265e-06 3.946064e+00 --3.749821e-06 3.946064e+00 --3.707461e-06 3.946064e+00 --3.789725e-06 3.946064e+00 --2.978795e-06 3.946064e+00 --3.909438e-06 3.946064e+00 --5.477010e-06 3.946064e+00 --5.032540e-06 3.946064e+00 --6.665188e-06 3.946064e+00 --4.448428e-06 3.946064e+00 --8.026181e-06 3.946064e+00 --7.526766e-06 3.946064e+00 --4.013365e-06 3.923165e+00 --3.726362e-06 3.923165e+00 --3.633969e-06 3.923165e+00 --3.715312e-06 3.923165e+00 --4.356212e-06 3.923165e+00 --3.497374e-06 3.923165e+00 --4.190763e-06 3.923165e+00 --8.240897e-06 3.923165e+00 --4.856525e-06 3.923165e+00 --4.778866e-06 3.923165e+00 --5.503257e-06 3.923165e+00 --7.067454e-06 3.923165e+00 --3.887915e-06 3.891716e+00 --3.675195e-06 3.891716e+00 --3.685018e-06 3.891716e+00 --3.568397e-06 3.891716e+00 --3.669670e-06 3.891716e+00 --4.073622e-06 3.891716e+00 -1.261790e-06 2.850858e+01 -1.112917e-06 2.850858e+01 -1.210835e-06 2.850858e+01 -1.278365e-06 2.850858e+01 -1.294020e-06 2.850858e+01 -1.214826e-06 2.850858e+01 -1.159267e-06 2.850858e+01 -1.241224e-06 2.850858e+01 -1.149137e-06 2.850858e+01 -1.169703e-06 2.850858e+01 -1.197943e-06 2.850858e+01 -1.201320e-06 2.850858e+01 -1.079152e-06 2.850858e+01 -1.206231e-06 2.850858e+01 -1.175842e-06 2.850858e+01 -9.517552e-07 2.850858e+01 -1.322142e-06 2.854498e+01 -1.270267e-06 2.854498e+01 -1.257988e-06 2.854498e+01 -1.379235e-06 2.854498e+01 -1.335034e-06 2.854498e+01 -1.290526e-06 2.854498e+01 -1.108184e-06 2.854498e+01 -1.436943e-06 2.854498e+01 -1.417605e-06 2.854498e+01 -1.461192e-06 2.854498e+01 -1.317538e-06 2.854498e+01 -1.155455e-06 2.854498e+01 -8.380645e-07 2.854498e+01 -1.347926e-06 2.854498e+01 -1.337183e-06 2.854498e+01 -1.117700e-06 2.854498e+01 -1.300964e-06 2.855638e+01 -1.428964e-06 2.855638e+01 -1.548983e-06 2.855638e+01 -1.244791e-06 2.855638e+01 -4.798403e-07 2.855638e+01 -2.250998e-06 2.855638e+01 -1.333194e-06 2.855638e+01 -2.436409e-06 2.855638e+01 -1.509693e-06 2.855638e+01 -9.390544e-07 2.855638e+01 -1.720264e-06 2.855638e+01 -1.582441e-06 2.855638e+01 -9.439657e-07 2.855638e+01 -1.935142e-06 2.855638e+01 -1.389674e-06 2.855638e+01 --2.872682e-06 3.199825e+01 --9.110037e-07 3.199825e+01 --2.015918e-06 3.199825e+01 --1.542655e-06 3.199825e+01 --3.982565e-06 3.199825e+01 --3.772130e-07 3.199825e+01 -3.339123e-06 3.199825e+01 --1.775265e-06 3.199825e+01 --3.351603e-07 3.199825e+01 --2.049669e-05 3.199825e+01 -4.249716e-07 3.199825e+01 --3.041579e-07 3.199825e+01 -2.638967e-06 3.199825e+01 --7.749071e-07 3.199825e+01 -1.323893e-07 3.199825e+01 --5.693634e-07 3.199825e+01 --5.506309e-06 3.199571e+01 --1.269306e-07 3.199571e+01 -3.521692e-07 3.199571e+01 --3.860118e-06 3.199571e+01 --4.713475e-06 3.199571e+01 --5.649546e-07 3.199571e+01 --4.291412e-06 3.199571e+01 -4.651813e-07 3.199571e+01 -4.651965e-06 3.199571e+01 -3.252101e-07 3.199571e+01 -2.670871e-05 3.199571e+01 -8.905642e-07 3.199571e+01 --2.045106e-06 3.199571e+01 --9.514071e-07 3.199571e+01 --6.031269e-07 3.199293e+01 --2.960539e-07 3.199293e+01 --1.115549e-06 3.199293e+01 -2.073196e-06 3.199293e+01 --1.105420e-06 3.199293e+01 --4.909700e-07 3.199293e+01 -6.050079e-06 3.199293e+01 -1.362788e-06 3.199293e+01 -1.120431e-08 3.199293e+01 --9.831333e-07 3.199293e+01 --1.078240e-07 3.199293e+01 -1.376696e-07 3.199293e+01 -1.321468e-06 3.199293e+01 --1.589484e-06 3.199293e+01 --6.614482e-07 3.199293e+01 -2.334393e-07 3.199293e+01 --2.588369e-06 2.948546e+01 --3.492332e-06 2.948546e+01 -1.192336e-06 2.948546e+01 --1.208319e-06 2.948546e+01 --1.087817e-05 2.948546e+01 --2.203141e-06 2.948546e+01 -3.409134e-06 2.948546e+01 -4.170670e-06 2.948546e+01 --1.901107e-06 2.948546e+01 --1.134036e-06 2.948546e+01 --1.863658e-06 2.948546e+01 -3.036309e-06 2.947213e+01 -3.282170e-06 2.947213e+01 -5.825417e-07 2.947213e+01 --1.961839e-07 2.947213e+01 --4.724430e-07 2.947213e+01 -4.453420e-07 2.947213e+01 --2.332560e-06 2.947213e+01 --1.486910e-06 2.947213e+01 --1.249705e-07 2.947213e+01 --1.899456e-06 2.947213e+01 --1.637931e-06 2.947213e+01 --2.845049e-06 -2.503629e+01 --3.075879e-06 -2.503629e+01 --3.694993e-06 -2.503629e+01 --3.136656e-06 -2.503629e+01 --3.724767e-06 -2.503629e+01 --3.747789e-06 -2.503629e+01 --3.618561e-06 -2.503629e+01 --3.892671e-06 -2.503629e+01 --3.606590e-06 -2.503629e+01 --4.884106e-06 -2.503629e+01 --3.538753e-06 -2.503629e+01 --7.182833e-06 -2.503629e+01 --4.221142e-06 -2.506134e+01 --3.501347e-06 -2.506134e+01 --1.750507e-06 -2.506134e+01 -2.619200e-06 -2.506134e+01 --1.216986e-05 -2.506134e+01 --2.391414e-06 -2.506134e+01 --2.657236e-06 -2.506134e+01 --2.933495e-06 -2.506134e+01 --1.945959e-07 -2.506134e+01 --2.563308e-06 -2.506134e+01 --7.794009e-06 -2.506134e+01 --7.944110e-06 -2.506134e+01 --3.614754e-06 -2.681433e+01 --3.943091e-06 -2.681433e+01 --3.371444e-06 -2.681433e+01 --3.289702e-06 -2.681433e+01 --3.724749e-06 -2.681433e+01 --3.349453e-06 -2.681433e+01 --1.331832e-05 -2.681433e+01 --3.690677e-06 -2.681433e+01 --2.020979e-06 -2.681433e+01 -5.333430e-07 -2.681433e+01 --2.785480e-06 -2.681433e+01 --4.359002e-06 -2.681433e+01 --3.359073e-06 -2.681433e+01 --4.300583e-06 -2.681433e+01 --4.169102e-06 -2.681433e+01 --1.229969e-06 -2.681433e+01 --3.406705e-06 -2.683418e+01 --6.718108e-06 -2.683418e+01 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2.623915e-06 2.123487e+00 +54644.1850787936 0.169000 1394.000000 2.543493e-06 2.123487e+00 +54644.1850787936 0.215000 1390.000000 2.758054e-06 2.123487e+00 +54644.1850787936 0.168000 1386.000000 2.428999e-06 2.123487e+00 +54672.9600358256 1.193000 1432.000000 -2.527964e-06 1.289845e+01 +54672.9600358257 1.316000 1428.000000 -2.015984e-06 1.289845e+01 +54672.9600358257 1.334000 1424.000000 -1.829119e-07 1.289845e+01 +54672.9600358257 1.758000 1420.000000 -1.016273e-06 1.289845e+01 +54672.9600358257 2.201000 1416.000000 -1.074902e-06 1.289845e+01 diff --git a/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.par.libstempo b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.par.libstempo index 50bcf0ca2..5b1a074cc 100644 --- a/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.par.libstempo +++ b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.par.libstempo @@ -1,2002 +1,2002 @@ -# Created using libstempo on 2022-04-21T13:37:38.474537 -# Residual BinaryDelay --7.862150e-06 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2.810854e+01 --4.636262e-07 2.810854e+01 --4.999434e-06 2.810854e+01 --6.776076e-07 2.810854e+01 -1.545342e-06 2.810854e+01 --1.500497e-06 2.810854e+01 --2.166674e-06 2.266363e+01 --1.136874e-06 2.266363e+01 --7.077530e-06 2.266363e+01 --4.154158e-06 2.266363e+01 --3.548553e-06 2.266363e+01 --2.603164e-06 2.266363e+01 --4.480451e-06 2.266363e+01 --1.822287e-06 2.266363e+01 --4.233352e-06 2.266363e+01 -1.201137e-06 2.266363e+01 --7.300036e-08 2.266363e+01 --4.339009e-06 3.946065e+00 --3.470064e-06 3.946065e+00 --3.517928e-06 3.946065e+00 --3.475261e-06 3.946065e+00 --3.557525e-06 3.946065e+00 --2.746594e-06 3.946065e+00 --3.677237e-06 3.946065e+00 --5.244810e-06 3.946065e+00 --4.800340e-06 3.946065e+00 --6.432987e-06 3.946065e+00 --4.216534e-06 3.946065e+00 --7.794287e-06 3.946065e+00 --7.294872e-06 3.946065e+00 --3.781174e-06 3.923165e+00 --3.494172e-06 3.923165e+00 --3.401778e-06 3.923165e+00 --3.483121e-06 3.923165e+00 --4.124021e-06 3.923165e+00 --3.265491e-06 3.923165e+00 --3.958572e-06 3.923165e+00 --8.008706e-06 3.923165e+00 --4.624335e-06 3.923165e+00 --4.546675e-06 3.923165e+00 --5.271066e-06 3.923165e+00 --6.835263e-06 3.923165e+00 --3.655738e-06 3.891717e+00 --3.443018e-06 3.891717e+00 --3.452841e-06 3.891717e+00 --3.336220e-06 3.891717e+00 --3.437800e-06 3.891717e+00 --3.841445e-06 3.891717e+00 -1.227641e-06 2.850858e+01 -1.079075e-06 2.850858e+01 -1.176687e-06 2.850858e+01 -1.244524e-06 2.850858e+01 -1.259872e-06 2.850858e+01 -1.180984e-06 2.850858e+01 -1.125119e-06 2.850858e+01 -1.207382e-06 2.850858e+01 -1.115296e-06 2.850858e+01 -1.135862e-06 2.850858e+01 -1.164102e-06 2.850858e+01 -1.167478e-06 2.850858e+01 -1.045310e-06 2.850858e+01 -1.172083e-06 2.850858e+01 -1.141694e-06 2.850858e+01 -9.176070e-07 2.850858e+01 -1.288432e-06 2.854498e+01 -1.236556e-06 2.854498e+01 -1.224585e-06 2.854498e+01 -1.345832e-06 2.854498e+01 -1.301631e-06 2.854498e+01 -1.256815e-06 2.854498e+01 -1.074781e-06 2.854498e+01 -1.403232e-06 2.854498e+01 -1.384201e-06 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--2.278141e-06 -2.506134e+01 --2.543963e-06 -2.506134e+01 --2.820222e-06 -2.506134e+01 --8.162987e-08 -2.506134e+01 --2.450035e-06 -2.506134e+01 --7.680736e-06 -2.506134e+01 --7.830837e-06 -2.506134e+01 --3.516938e-06 -2.681433e+01 --3.845274e-06 -2.681433e+01 --3.273627e-06 -2.681433e+01 --3.191578e-06 -2.681433e+01 --3.626625e-06 -2.681433e+01 --3.251330e-06 -2.681433e+01 --1.322020e-05 -2.681433e+01 --3.592553e-06 -2.681433e+01 --1.923162e-06 -2.681433e+01 -6.314667e-07 -2.681433e+01 --2.687357e-06 -2.681433e+01 --4.260878e-06 -2.681433e+01 --3.261257e-06 -2.681433e+01 --4.202459e-06 -2.681433e+01 --4.071285e-06 -2.681433e+01 --1.131846e-06 -2.681433e+01 --3.308768e-06 -2.683418e+01 --6.620479e-06 -2.683418e+01 --3.040462e-06 -2.683418e+01 --4.433732e-06 -2.683418e+01 --3.580997e-06 -2.683418e+01 --1.393659e-05 -2.683418e+01 --3.004895e-06 -2.683418e+01 --3.597265e-06 -2.683418e+01 --3.805448e-06 -2.683418e+01 --5.021537e-06 -2.683418e+01 --3.909119e-06 -2.683418e+01 --8.529392e-06 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1.316000 1428.000000 -1.819326e-06 1.289845e+01 +54672.9600358257 1.334000 1424.000000 1.374655e-08 1.289845e+01 +54672.9600358257 1.758000 1420.000000 -8.196149e-07 1.289845e+01 +54672.9600358257 2.201000 1416.000000 -8.782432e-07 1.289845e+01 diff --git a/tests/datafile/make_J1713_libstempo.py b/tests/datafile/make_J1713_libstempo.py index c5c092e30..24509958b 100644 --- a/tests/datafile/make_J1713_libstempo.py +++ b/tests/datafile/make_J1713_libstempo.py @@ -10,12 +10,16 @@ ] for parfile in parfiles: psr = T.tempopulsar(parfile=parfile, timfile=timJ1713) - x = np.array([psr.residuals(), psr.binarydelay()]) + x = np.array( + [psr.toas(), psr.toaerrs, psr.freqs, psr.residuals(), psr.binarydelay()] + ) fout = open(parfile + ".libstempo", "w") fout.write( "# Created using libstempo on %s\n" % datetime.datetime.now().isoformat() ) - fout.write("# Residual BinaryDelay\n") + fout.write("# TOA TOAerr FrequencyResidual BinaryDelay\n") for i in range(psr.nobs): - fout.write("%e %e\n" % (x[0, i], x[1, i])) + fout.write( + "%.10f %f %f %e %e\n" % (x[0, i], x[1, i], x[2, i], x[3, i], x[4, i]) + ) fout.close() diff --git a/tests/test_ddk.py b/tests/test_ddk.py index edd9efae5..6bb4871dc 100644 --- a/tests/test_ddk.py +++ b/tests/test_ddk.py @@ -62,10 +62,22 @@ def setUpClass(cls): cls.ICRSmodelJ1713 = mb.get_model(os.path.join(datadir, cls.ICRSparfileJ1713)) # libstempo result # calculate using: datafile/make_J1713_libstempo.py - cls.ECLltres, cls.ECLltbindelay = np.genfromtxt( + ( + cls.ECLltt, + cls.ECLltdt, + cls.ECLltf, + cls.ECLltres, + cls.ECLltbindelay, + ) = np.genfromtxt( os.path.join(datadir, cls.parfileJ1713 + ".libstempo"), unpack=True ) - cls.ICRSltres, cls.ICRSltbindelay = np.genfromtxt( + ( + cls.ICRSltt, + cls.ICRSltdt, + cls.ICRSltf, + cls.ICRSltres, + cls.ICRSltbindelay, + ) = np.genfromtxt( os.path.join(datadir, cls.ICRSparfileJ1713 + ".libstempo"), unpack=True ) From c65d59674bcb5b2ab10fbe1f8f692f173dac48d6 Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Tue, 24 May 2022 12:07:41 -0500 Subject: [PATCH 23/26] ensured uncertainties are > 0 --- src/pint/models/astrometry.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/src/pint/models/astrometry.py b/src/pint/models/astrometry.py index 726368275..91663303a 100644 --- a/src/pint/models/astrometry.py +++ b/src/pint/models/astrometry.py @@ -1017,8 +1017,8 @@ def as_ICRS(self, epoch=None): frame=PulsarEcliptic, ) c_ICRS = c.transform_to(coords.ICRS) - m_eq.RAJ.uncertainty = c_ICRS.pm_ra_cosdec * dt / np.cos(c_ICRS.dec) - m_eq.DECJ.uncertainty = c_ICRS.pm_dec * dt + m_eq.RAJ.uncertainty = np.abs(c_ICRS.pm_ra_cosdec * dt / np.cos(c_ICRS.dec)) + m_eq.DECJ.uncertainty = np.abs(c_ICRS.pm_dec * dt) # use fake proper motions to convert uncertainties on proper motion # assume that PMELONG uncertainty includes cos(DEC) c = coords.SkyCoord( @@ -1031,8 +1031,8 @@ def as_ICRS(self, epoch=None): frame=PulsarEcliptic, ) c_ICRS = c.transform_to(coords.ICRS) - m_eq.PMRA.uncertainty = c_ICRS.pm_ra_cosdec - m_eq.PMDEC.uncertainty = c_ICRS.pm_dec + m_eq.PMRA.uncertainty = np.abs(c_ICRS.pm_ra_cosdec) + m_eq.PMDEC.uncertainty = np.abs(c_ICRS.pm_dec) # freeze comparable parameters m_eq.RAJ.frozen = self.ELONG.frozen m_eq.DECJ.frozen = self.ELAT.frozen From f52db180e45c2d3400cfa9eaf831be8326f5bf41 Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Tue, 24 May 2022 12:08:01 -0500 Subject: [PATCH 24/26] updated DDK test data (again) --- tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par | 1 + .../J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par.libstempo | 2 +- .../datafile/J1713+0747_NANOGrav_11yv0_short.gls.par.libstempo | 2 +- tests/datafile/make_J1713_libstempo.py | 3 ++- 4 files changed, 5 insertions(+), 3 deletions(-) diff --git a/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par index bd39c0b7a..d8af88a5a 100644 --- a/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par +++ b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par @@ -5,6 +5,7 @@ # OS: macOS-10.16-x86_64-i386-64bit # Format: pint PSR J1713+0747 +MODE 1 EPHEM DE421 CLK TT(BIPM2015) UNITS TDB diff --git a/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par.libstempo b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par.libstempo index 8e8d77d55..0827cddf7 100644 --- a/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par.libstempo +++ b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par.libstempo @@ -1,4 +1,4 @@ -# Created using libstempo on 2022-05-23T17:28:04.705316 +# Created using libstempo on 2022-05-24T10:51:48.160109 # TOA TOAerr FrequencyResidual BinaryDelay 53393.5587828842 0.178000 1430.000000 -8.258987e-06 -1.403934e+01 53393.5587828842 0.194000 1426.000000 -8.637769e-06 -1.403934e+01 diff --git a/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.par.libstempo b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.par.libstempo index 5b1a074cc..a09eb24b6 100644 --- a/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.par.libstempo +++ b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.par.libstempo @@ -1,4 +1,4 @@ -# Created using libstempo on 2022-05-23T17:28:05.195389 +# Created using libstempo on 2022-05-24T10:51:47.704386 # TOA TOAerr FrequencyResidual BinaryDelay 53393.5587828842 0.178000 1430.000000 -7.862150e-06 -1.403934e+01 53393.5587828842 0.194000 1426.000000 -8.240625e-06 -1.403934e+01 diff --git a/tests/datafile/make_J1713_libstempo.py b/tests/datafile/make_J1713_libstempo.py index 24509958b..0b5845ab8 100644 --- a/tests/datafile/make_J1713_libstempo.py +++ b/tests/datafile/make_J1713_libstempo.py @@ -5,10 +5,11 @@ timJ1713 = "J1713+0747_NANOGrav_11yv0_short.tim" # one file in ICRS, one in ECL parfiles = [ - "J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par", "J1713+0747_NANOGrav_11yv0_short.gls.par", + "J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par", ] for parfile in parfiles: + print(f"Parfile {parfile}") psr = T.tempopulsar(parfile=parfile, timfile=timJ1713) x = np.array( [psr.toas(), psr.toaerrs, psr.freqs, psr.residuals(), psr.binarydelay()] From 7b75645b4c9e2eca39663189736caf15e4d2fa06 Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Tue, 24 May 2022 12:13:42 -0500 Subject: [PATCH 25/26] tightened testing limits --- tests/test_ddk.py | 15 ++++++++++----- 1 file changed, 10 insertions(+), 5 deletions(-) diff --git a/tests/test_ddk.py b/tests/test_ddk.py index 6bb4871dc..31dbb429a 100644 --- a/tests/test_ddk.py +++ b/tests/test_ddk.py @@ -57,11 +57,12 @@ def setUpClass(cls): cls.toasJ1713 = toa.get_TOAs( os.path.join(datadir, cls.timJ1713), ephem="DE421", planets=False ) - cls.toasJ1713.table.sort("index") + index = cls.toasJ1713.table["index"] cls.ECLmodelJ1713 = mb.get_model(os.path.join(datadir, cls.parfileJ1713)) cls.ICRSmodelJ1713 = mb.get_model(os.path.join(datadir, cls.ICRSparfileJ1713)) # libstempo result # calculate using: datafile/make_J1713_libstempo.py + # make sure to sort to agree with the grouped TOAs ( cls.ECLltt, cls.ECLltdt, @@ -70,7 +71,9 @@ def setUpClass(cls): cls.ECLltbindelay, ) = np.genfromtxt( os.path.join(datadir, cls.parfileJ1713 + ".libstempo"), unpack=True - ) + )[ + :, index + ] ( cls.ICRSltt, cls.ICRSltdt, @@ -79,7 +82,9 @@ def setUpClass(cls): cls.ICRSltbindelay, ) = np.genfromtxt( os.path.join(datadir, cls.ICRSparfileJ1713 + ".libstempo"), unpack=True - ) + )[ + :, index + ] def test_J1713_ECL_binary_delay(self): # Calculate delays with PINT @@ -105,7 +110,7 @@ def test_J1713_ECL(self): ).time_resids.to(u.s) diff = pint_resids_us.value - self.ECLltres print("Max diff %e" % np.abs(diff - diff.mean()).max()) - assert np.all(np.abs(diff - diff.mean()) < 5e-8), ( + assert np.all(np.abs(diff - diff.mean()) < 2e-8), ( "DDK J1713 ECL RESIDUAL TEST FAILED: max difference is %e" % np.abs(diff - diff.mean()).max() ) @@ -116,7 +121,7 @@ def test_J1713_ICRS(self): ).time_resids.to(u.s) diff = pint_resids_us.value - self.ICRSltres print("Max diff %e" % np.abs(diff - diff.mean()).max()) - assert np.all(np.abs(diff - diff.mean()) < 5e-8), ( + assert np.all(np.abs(diff - diff.mean()) < 2e-8), ( "DDK J1713 ICRS RESIDUAL TEST FAILED: max difference is %e" % np.abs(diff - diff.mean()).max() ) From dc378ab372fccb7e044748955a70195f3252386b Mon Sep 17 00:00:00 2001 From: David Kaplan Date: Wed, 25 May 2022 08:51:52 -0500 Subject: [PATCH 26/26] fixed changelog entry --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 1e84ac6f6..dab0ef85e 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -9,6 +9,7 @@ and this project, at least loosely, adheres to [Semantic Versioning](https://sem - Warning when A1DOT parameter used with DDK model ### Fixed ### Changed +- DDK model will now use ICRS or ECL coordinates depending on what the input model is ## [0.8.6 == 0.8.7] 2022-05-10 ### Added @@ -29,7 +30,6 @@ and this project, at least loosely, adheres to [Semantic Versioning](https://sem - DMDATA now an integer for tempo/tempo2 parfile output ### Changed - Changed logging to use `loguru` -- DDK model will now use ICRS or ECL coordinates depending on what the input model is - Changed to floating point format and added color for correlation matrix output - prefix parameters no longer inherit frozen status - Updated clock files for GBT (`time_gbt.dat`) and GPS to UTC conversion (`gps2utc.clk`) with new entries