diff --git a/CHANGELOG.md b/CHANGELOG.md index 2faf638bb..06ee2a1f3 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,6 +10,7 @@ and this project, at least loosely, adheres to [Semantic Versioning](https://sem ### Fixed - WLS fitters no longer ignore EFAC/EQUAD (bug #1226) ### Changed +- DDK model will now use ICRS or ECL coordinates depending on what the input model is ## [0.8.6 == 0.8.7] 2022-05-10 ### Added diff --git a/src/pint/models/astrometry.py b/src/pint/models/astrometry.py index 3e30e7e74..91663303a 100644 --- a/src/pint/models/astrometry.py +++ b/src/pint/models/astrometry.py @@ -63,13 +63,19 @@ def ssb_to_psb_xyz_ICRS(self, epoch=None): # TODO: would it be better for this to return a 6-vector (pos, vel)? return self.coords_as_ICRS(epoch=epoch).cartesian.xyz.transpose() - def ssb_to_psb_xyz_ECL(self, epoch=None): + def ssb_to_psb_xyz_ECL(self, epoch=None, ecl=None): """Returns unit vector(s) from SSB to pulsar system barycenter under Ecliptic coordinates. If epochs (MJD) are given, proper motion is included in the calculation. + + Parameters + ---------- + epoch : float, optional + ecl : str, optional + Obliquity (IERS2010 by default) """ # TODO: would it be better for this to return a 6-vector (pos, vel)? - return self.coords_as_ECL(epoch=epoch).cartesian.xyz.transpose() + return self.coords_as_ECL(epoch=epoch, ecl=ecl).cartesian.xyz.transpose() def sun_angle(self, toas, heliocenter=True, also_distance=False): """Compute the pulsar-observatory-Sun angle. @@ -1011,8 +1017,8 @@ def as_ICRS(self, epoch=None): frame=PulsarEcliptic, ) c_ICRS = c.transform_to(coords.ICRS) - m_eq.RAJ.uncertainty = c_ICRS.pm_ra_cosdec * dt / np.cos(c_ICRS.dec) - m_eq.DECJ.uncertainty = c_ICRS.pm_dec * dt + m_eq.RAJ.uncertainty = np.abs(c_ICRS.pm_ra_cosdec * dt / np.cos(c_ICRS.dec)) + m_eq.DECJ.uncertainty = np.abs(c_ICRS.pm_dec * dt) # use fake proper motions to convert uncertainties on proper motion # assume that PMELONG uncertainty includes cos(DEC) c = coords.SkyCoord( @@ -1025,8 +1031,8 @@ def as_ICRS(self, epoch=None): frame=PulsarEcliptic, ) c_ICRS = c.transform_to(coords.ICRS) - m_eq.PMRA.uncertainty = c_ICRS.pm_ra_cosdec - m_eq.PMDEC.uncertainty = c_ICRS.pm_dec + m_eq.PMRA.uncertainty = np.abs(c_ICRS.pm_ra_cosdec) + m_eq.PMDEC.uncertainty = np.abs(c_ICRS.pm_dec) # freeze comparable parameters m_eq.RAJ.frozen = self.ELONG.frozen m_eq.DECJ.frozen = self.ELAT.frozen diff --git a/src/pint/models/binary_ddk.py b/src/pint/models/binary_ddk.py index b60d2a1d8..215003e5a 100644 --- a/src/pint/models/binary_ddk.py +++ b/src/pint/models/binary_ddk.py @@ -2,6 +2,8 @@ import warnings import numpy as np from astropy import units as u +from loguru import logger as log + from pint.models.binary_dd import BinaryDD from pint.models.parameter import boolParameter, floatParameter from pint.models.stand_alone_psr_binaries.DDK_model import DDKmodel @@ -16,25 +18,36 @@ class BinaryDDK(BinaryDD): of the system from Earth, the finite size of the system, and the interaction of these with the proper motion. + From Kopeikin (1995) this includes :math:`\Delta_{\pi M}` (Equation 17), the mixed annual-orbital parallax term, which changes :math:`a_1` and :math:`\omega` + (:meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_a1_parallax` and :meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_omega_parallax`). + + It does not include :math:`\Delta_{\pi P}`, the pure pulsar orbital parallax term (Equation 14). + + From Kopeikin (1996) this includes apparent changes in :math:`\omega`, :math:`a_1`, and :math:`i` due to the proper motion + (:meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_omega_proper_motion`, :meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_a1_proper_motion`, + :meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_kin_proper_motion`) (Equations 8, 9, 10). + The actual calculations for this are done in :class:`pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel`. It supports all the parameters defined in :class:`pint.models.pulsar_binary.PulsarBinary` - and :class:`pint.models.pulsar_binary.BinaryDDK` plus: + and :class:`pint.models.binary_dd.BinaryDD` plus: - - KIN - inclination angle (deg) - - KOM - the longitude of the ascending node, Kopeikin (1995) Eq 9. OMEGA (deg) - - K96 - flag for Kopeikin binary model proper motion correction + KIN + the inclination angle: :math:`i` + KOM + the longitude of the ascending node, Kopeikin (1995) Eq 9: :math:`\Omega` + K96 + flag for Kopeikin binary model proper motion correction It also removes: - - SINI - use KIN instead + SINI + use ``KIN`` instead Note ---- - This model defines KOM with reference to celestial north regardless of the astrometry - model. This is incompatible with tempo2, which defines KOM with reference to ecliptic - north when using ecliptic coordinates. + This model defines KOM with reference to north, either equatorial or ecliptic depending on how the model is defined. Parameters supported: @@ -43,7 +56,12 @@ class BinaryDDK(BinaryDD): References ---------- - KOPEIKIN. 1995, 1996 + - Kopeikin (1995), ApJ, 439, L5 [1]_ + - Kopeikin (1996), ApJ, 467, L93 [2]_ + + .. [1] https://ui.adsabs.harvard.edu/abs/1995ApJ...439L...5K/abstract + .. [2] https://ui.adsabs.harvard.edu/abs/1996ApJ...467L..93K/abstract + """ register = True @@ -76,35 +94,43 @@ def __init__( ) ) self.remove_param("SINI") - self.internal_params += ["PMRA_DDK", "PMDEC_DDK"] + self.internal_params += ["PMLONG_DDK", "PMLAT_DDK"] @property - def PMRA_DDK(self): - params = self._parent.get_params_as_ICRS() - par_obj = floatParameter( - name="PMRA", - units="mas/year", - value=params["PMRA"], - description="Proper motion in RA", - ) - return par_obj + def PMLONG_DDK(self): + """Proper motion in longitude (RA or ecliptic longitude)""" + if "AstrometryEquatorial" in self._parent.components: + return self._parent.PMRA + elif "AstrometryEcliptic" in self._parent.components: + return self._parent.PMELONG + else: + raise TimingModelError( + "No valid AstrometryEcliptic or AstrometryEquatorial component found" + ) @property - def PMDEC_DDK(self): - params = self._parent.get_params_as_ICRS() - par_obj = floatParameter( - name="PMDEC", - units="mas/year", - value=params["PMDEC"], - description="Proper motion in DEC", - ) - return par_obj + def PMLAT_DDK(self): + """Proper motion in latitude (Dec or ecliptic latitude)""" + if "AstrometryEquatorial" in self._parent.components: + return self._parent.PMDEC + elif "AstrometryEcliptic" in self._parent.components: + return self._parent.PMELAT + else: + raise TimingModelError( + "No valid AstrometryEcliptic or AstrometryEquatorial component found" + ) def validate(self): """Validate parameters.""" super().validate() - if "PMRA" not in self._parent.params or "PMDEC" not in self._parent.params: - # Check ecliptic coordinates proper motion. + if "AstrometryEquatorial" in self._parent.components: + log.debug("Validating DDK model in ICRS coordinates") + if "PMRA" not in self._parent.params or "PMDEC" not in self._parent.params: + raise MissingParameter( + "DDK", "DDK model needs proper motion parameters." + ) + elif "AstrometryEcliptic" in self._parent.components: + log.debug("Validating DDK model in ECL coordinates") if ( "PMELONG" not in self._parent.params or "PMELAT" not in self._parent.params @@ -112,6 +138,10 @@ def validate(self): raise MissingParameter( "DDK", "DDK model needs proper motion parameters." ) + else: + raise TimingModelError( + "No valid AstrometryEcliptic or AstrometryEquatorial component found" + ) if hasattr(self._parent, "PX"): if self._parent.PX.value <= 0.0 or self._parent.PX.value is None: @@ -123,8 +153,6 @@ def validate(self): if "A1DOT" in self.params and self.A1DOT.value != 0: warnings.warn("Using A1DOT with a DDK model is not advised.") - # Should we warn if the model is using ecliptic coordinates? - # Should we support KOM_PINT that works this way and KOM that works the way tempo2 does? def alternative_solutions(self): """Alternative Kopeikin solutions (potential local minima) @@ -132,7 +160,7 @@ def alternative_solutions(self): There are 4 potential local minima for a DDK model where a1dot is the same These are given by where Eqn. 8 in Kopeikin (1996) is equal to the best-fit value. - We first define the symmetry point where a1dot is zero: + We first define the symmetry point where a1dot is zero (in equatorial coordinates): :math:`KOM_0 = \\tan^{-1} (\mu_{\delta} / \mu_{\\alpha})` @@ -157,7 +185,9 @@ def alternative_solutions(self): y0 = self.KOM.quantity solutions = [(x0, y0)] # where Eqn. 8 in Kopeikin (1996) that is equal to 0 - KOM_zero = np.arctan2(self.PMDEC_DDK.quantity, self.PMRA_DDK.quantity).to(u.deg) + KOM_zero = np.arctan2(self.PMLAT_DDK.quantity, self.PMLONG_DDK.quantity).to( + u.deg + ) # second one in the same banana solutions += [(x0, (2 * (KOM_zero) - y0 - 180 * u.deg) % (360 * u.deg))] # and the other banana diff --git a/src/pint/models/pulsar_binary.py b/src/pint/models/pulsar_binary.py index 84bf98e95..22aa9276a 100644 --- a/src/pint/models/pulsar_binary.py +++ b/src/pint/models/pulsar_binary.py @@ -7,6 +7,7 @@ import astropy.units as u import numpy as np from astropy.time import Time +from astropy.coordinates import SkyCoord from loguru import logger as log from pint import ls @@ -14,6 +15,7 @@ from pint.models.stand_alone_psr_binaries import binary_orbits as bo from pint.models.timing_model import DelayComponent, MissingParameter, UnknownParameter from pint.utils import taylor_horner_deriv +from pint.pulsar_ecliptic import PulsarEcliptic class PulsarBinary(DelayComponent): @@ -269,6 +271,11 @@ def update_binary_object(self, toas, acc_delay=None): the standard barycentering. The stand alone binary receives the input TOAs - acc_delay. + Notes + ----- + The values for ``obs_pos`` (the observatory position wrt the Solar System Barycenter) and ``psr_pos`` + (the pulsar position wrt the Solar System Barycenter) are both computed in the same reference frame, ICRS or ECL depending on the model. + Warns ----- If passing 'None' to 'toa' argument, the stand alone binary model will use @@ -291,10 +298,25 @@ def update_binary_object(self, toas, acc_delay=None): else: self.barycentric_time = tbl["tdbld"] * u.day - acc_delay updates["barycentric_toa"] = self.barycentric_time - updates["obs_pos"] = tbl["ssb_obs_pos"].quantity - updates["psr_pos"] = self._parent.ssb_to_psb_xyz_ICRS( - epoch=tbl["tdbld"].astype(np.float64) - ) + if "AstrometryEquatorial" in self._parent.components: + # it's already in ICRS + updates["obs_pos"] = tbl["ssb_obs_pos"].quantity + updates["psr_pos"] = self._parent.ssb_to_psb_xyz_ICRS( + epoch=tbl["tdbld"].astype(np.float64) + ) + elif "AstrometryEcliptic" in self._parent.components: + # convert from ICRS to ECL + obs_pos = SkyCoord( + tbl["ssb_obs_pos"].quantity, + representation_type="cartesian", + frame="icrs", + ) + updates["obs_pos"] = obs_pos.transform_to( + PulsarEcliptic(ecl=self._parent.ECL.value) + ).cartesian.xyz.transpose() + updates["psr_pos"] = self._parent.ssb_to_psb_xyz_ECL( + epoch=tbl["tdbld"].astype(np.float64), ecl=self._parent.ECL.value + ) for par in self.binary_instance.binary_params: if par in self.binary_instance.param_aliases.keys(): alias = self.binary_instance.param_aliases[par] diff --git a/src/pint/models/stand_alone_psr_binaries/DDK_model.py b/src/pint/models/stand_alone_psr_binaries/DDK_model.py index 779e78d02..5fc6838be 100644 --- a/src/pint/models/stand_alone_psr_binaries/DDK_model.py +++ b/src/pint/models/stand_alone_psr_binaries/DDK_model.py @@ -4,6 +4,7 @@ import astropy.units as u import numpy as np from loguru import logger as log +import warnings from pint import GMsun, Tsun, ls @@ -12,16 +13,45 @@ class DDKmodel(DDmodel): """DDK model, a Kopeikin method corrected DD model. - The main difference is that DDK model considers the annual parallax of earth and - the proper motion of the pulsar. - effects on the pulsar binary parameters. - Speical parameters are: - KIN - the inclination angle - KOM - the longitude of the ascending node, Kopeikin (1995) Eq 9. OMEGA + The main difference is that DDK model considers the effects on the pulsar binary parameters from the annual parallax of earth and the proper motion of the pulsar. + From Kopeikin (1995) this includes :math:`\Delta_{\pi M}` (Equation 17), the mixed annual-orbital parallax term, which changes :math:`a_1` and :math:`\omega` + (:meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_a1_parallax` and :meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_omega_parallax`). + + It does not include :math:`\Delta_{\pi P}`, the pure pulsar orbital parallax term (Equation 14). + + From Kopeikin (1996) this includes apparent changes in :math:`\omega`, :math:`a_1`, and :math:`i` due to the proper motion + (:meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_omega_proper_motion`, :meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_a1_proper_motion`, + :meth:`~pint.models.stand_alone_psr_binaries.DDK_model.DDKmodel.delta_kin_proper_motion`) (Equations 8, 9, 10). + + + Special parameters are: + + KIN + the inclination angle: :math:`i` + KOM + the longitude of the ascending node, Kopeikin (1995) Eq 9: :math:`\Omega` + K96 + flag for Kopeikin binary model proper motion correction + + It also removes: + + SINI + use ``KIN`` instead + + Notes + ----- + This model defines KOM with reference to north, either equatorial or ecliptic depending on how the model is defined. + + + References + ---------- + - Kopeikin (1995), ApJ, 439, L5 [1]_ + - Kopeikin (1996), ApJ, 467, L93 [2]_ + + .. [1] https://ui.adsabs.harvard.edu/abs/1995ApJ...439L...5K/abstract + .. [2] https://ui.adsabs.harvard.edu/abs/1996ApJ...467L..93K/abstract """ def __init__(self, t=None, input_params=None): @@ -31,8 +61,8 @@ def __init__(self, t=None, input_params=None): self.param_default_value.update( { "KIN": 0 * u.deg, - "PMRA_DDK": 0 * u.mas / u.year, - "PMDEC_DDK": 0.5 * u.mas / u.year, + "PMLONG_DDK": 0 * u.mas / u.year, + "PMLAT_DDK": 0.5 * u.mas / u.year, "PX": 0 * u.mas, "KOM": 0 * u.deg, "K96": True, @@ -70,30 +100,36 @@ def psr_pos(self): @psr_pos.setter def psr_pos(self, val): - """The pointing unit vector of a pulsar. alpha and delta described in - (Kopeikin 1995 L6 Eq10) + """The pointing unit vector of a pulsar. + long and lat are alpha and delta (if equatorial) + or elong and elat (if ecliptic) + described in + (Kopeikin 1995 Eq 10) """ self._psr_pos = val - self._sin_delta = self._psr_pos[:, 2] - self._cos_delta = np.cos(np.arcsin(self._sin_delta)) - self._sin_alpha = self._psr_pos[:, 1] / self._cos_delta - self._cos_alpha = self._psr_pos[:, 0] / self._cos_delta + # it appears that this is the vector K0 + # K0 = (cos(alpha)*cos(delta), sin(alpha)*cos(delta), sin(delta)) + # in equatorial coords + self._sin_lat = self._psr_pos[:, 2] + self._cos_lat = np.cos(np.arcsin(self._sin_lat)) + self._sin_long = self._psr_pos[:, 1] / self._cos_lat + self._cos_long = self._psr_pos[:, 0] / self._cos_lat @property - def sin_delta(self): - return self._sin_delta + def sin_lat(self): + return self._sin_lat @property - def cos_delta(self): - return self._cos_delta + def cos_lat(self): + return self._cos_lat @property - def sin_alpha(self): - return self._sin_alpha + def sin_long(self): + return self._sin_long @property - def cos_alpha(self): - return self._cos_alpha + def cos_long(self): + return self._cos_long @property def SINI(self): @@ -104,7 +140,7 @@ def SINI(self): @SINI.setter def SINI(self, val): - log.info( + warnings.warn( "DDK model uses KIN as inclination angle. SINI will not be " "used. This happens every time a DDK model is constructed." ) @@ -117,13 +153,18 @@ def SINI(self, val): # Update binary parameters due to the pulser proper motion def delta_kin_proper_motion(self): - """The time dependent inclination angle. - (KOPEIKIN. 1996 Eq 10.) - ki = KIN + d_KIN - d_KIN = (-PMRA_DDK * sin(KOM) + PMDEC_DDK * cos(KOM)) * (t-T0) + """The time dependent inclination angle + (Kopeikin 1996 Eq 10): + + .. math:: + + ki = KIN + \delta_{KIN} + + \delta_{KIN} = (-\mu_{long} \sin(KOM) + \mu_{lat} \cos(KOM)) (t-T_0) + """ d_KIN = ( - -self.PMRA_DDK * self.sin_KOM + self.PMDEC_DDK * self.cos_KOM + -self.PMLONG_DDK * self.sin_KOM + self.PMLAT_DDK * self.cos_KOM ) * self.tt0 return d_KIN.to(self.KIN.unit) @@ -140,7 +181,7 @@ def d_SINI_d_KIN(self): def d_SINI_d_KOM(self): if self.K96: d_si_d_kom = ( - (-self.PMRA_DDK * self.cos_KOM - self.PMDEC_DDK * self.sin_KOM) + (-self.PMLONG_DDK * self.cos_KOM - self.PMLAT_DDK * self.sin_KOM) * self.tt0 * np.cos(self.kin()) ) @@ -152,7 +193,7 @@ def d_SINI_d_KOM(self): def d_SINI_d_T0(self): if self.K96: d_si_d_kom = -( - -self.PMRA_DDK * self.sin_KOM + self.PMDEC_DDK * self.cos_KOM + -self.PMLONG_DDK * self.sin_KOM + self.PMLAT_DDK * self.cos_KOM ) return d_si_d_kom.to(u.Unit("") / self.T0.unit) else: @@ -168,7 +209,7 @@ def d_SINI_d_par(self, par): def d_kin_proper_motion_d_KOM(self): d_DKIN_d_KOM = ( - -self.PMRA_DDK * self.cos_KOM - self.PMDEC_DDK * self.sin_KOM + -self.PMLONG_DDK * self.cos_KOM - self.PMLAT_DDK * self.sin_KOM ) * self.tt0 return d_DKIN_d_KOM.to( self.KIN.unit / self.KOM.unit, equivalencies=u.dimensionless_angles() @@ -176,7 +217,7 @@ def d_kin_proper_motion_d_KOM(self): def d_kin_proper_motion_d_T0(self): d_DKIN_d_T0 = -1 * ( - -self.PMRA_DDK * self.sin_KOM + self.PMDEC_DDK * self.cos_KOM + -self.PMLONG_DDK * self.sin_KOM + self.PMLAT_DDK * self.cos_KOM ) return d_DKIN_d_T0.to( self.KIN.unit / self.T0.unit, equivalencies=u.dimensionless_angles() @@ -198,10 +239,16 @@ def d_kin_d_par(self, par): def delta_a1_proper_motion(self): """The correction on a1 (projected semi-major axis) due to the pulsar proper motion - (KOPEIKIN. 1996 Eq 8.) - d_x = a1 * cot(kin) * (-PMRA_DDK * sin(KOM) + PMDEC_DDK * cos(KOM)) * (t-T0) - d_kin = (-PMRA_DDK * sin(KOM) + PMDEC_DDK * cos(KOM)) * (t-T0) - d_x = a1 * d_kin * cot(kin) + (Kopeikin 1996 Eq 8): + + .. math:: + + \delta_x = a_1 \cot(kin) (-\mu_{long}\sin(KOM) + \mu_{lat}\cos(KOM)) (t-T_0) + + \delta_{kin} = (-\mu_{long} \sin(KOM) + \mu_{lat} \cos(KOM)) (t-T_0) + + \delta_x = a_1 \delta_{kin} \cot(kin) + """ a1 = self.a1_k(False, False) kin = self.kin() @@ -250,15 +297,19 @@ def d_delta_a1_proper_motion_d_T0(self): def delta_omega_proper_motion(self): """The correction on omega (Longitude of periastron) due to the pulsar proper motion - (KOPEIKIN. 1996 Eq 9.) - d_omega = csc(i) * (PMRA_DDK * cos(KOM) + PMDEC_DDK * sin(KOM)) * (t-T0) + (Kopeikin 1996 Eq 9): + + .. math:: + + \delta_{\Omega} = \csc(i) (\mu_{long}\cos(KOM) + \mu_{lat} \sin(KOM)) (t-T_0) + """ kin = self.kin() sin_kin = np.sin(kin) omega_dot = ( 1.0 / sin_kin - * (self.PMRA_DDK * self.cos_KOM + self.PMDEC_DDK * self.sin_KOM) + * (self.PMLONG_DDK * self.cos_KOM + self.PMLAT_DDK * self.sin_KOM) ) return (omega_dot * self.tt0).to(self.OM.unit) @@ -269,7 +320,7 @@ def d_delta_omega_proper_motion_d_KIN(self): d_omega_dot = ( -cos_kin / sin_kin**2 - * (self.PMRA_DDK * self.cos_KOM + self.PMDEC_DDK * self.sin_KOM) + * (self.PMLONG_DDK * self.cos_KOM + self.PMLAT_DDK * self.sin_KOM) ) return (d_omega_dot * self.tt0).to( self.OM.unit / self.KIN.unit, equivalencies=u.dimensionless_angles() @@ -284,8 +335,9 @@ def d_delta_omega_proper_motion_d_KOM(self): -cos_kin / sin_kin**2 * d_kin_d_KOM - * (self.PMRA_DDK * self.cos_KOM + self.PMDEC_DDK * self.sin_KOM) - + (-self.PMRA_DDK * self.sin_KOM + self.PMDEC_DDK * self.cos_KOM) / sin_kin + * (self.PMLONG_DDK * self.cos_KOM + self.PMLAT_DDK * self.sin_KOM) + + (-self.PMLONG_DDK * self.sin_KOM + self.PMLAT_DDK * self.cos_KOM) + / sin_kin ) return (d_omega_dot * self.tt0).to( self.OM.unit / self.KOM.unit, equivalencies=u.dimensionless_angles() @@ -299,7 +351,7 @@ def d_delta_omega_proper_motion_d_T0(self): # with u.set_enabled_equivalencies(u.dimensionless_angles()): d_omega_d_T0 = ( -cos_kin / sin_kin**2 * d_kin_d_T0 * self.tt0 - 1.0 / sin_kin - ) * (self.PMRA_DDK * self.cos_KOM + self.PMDEC_DDK * self.sin_KOM) + ) * (self.PMLONG_DDK * self.cos_KOM + self.PMLAT_DDK * self.sin_KOM) return d_omega_d_T0.to(self.OM.unit / self.T0.unit) # The code below is to implement the binary model parameter correction due @@ -308,33 +360,39 @@ def d_delta_omega_proper_motion_d_T0(self): def delta_I0(self): """ - Refernce: (Kopeikin 1995 Eq 15) + :math:`\Delta_{I0}` + + Reference: (Kopeikin 1995 Eq 15) """ - return ( - -self.obs_pos[:, 0] * self.sin_alpha + self.obs_pos[:, 1] * self.cos_alpha - ) + return -self.obs_pos[:, 0] * self.sin_long + self.obs_pos[:, 1] * self.cos_long def delta_J0(self): """ + :math:`\Delta_{J0}` + Reference: (Kopeikin 1995 Eq 16) """ return ( - -self.obs_pos[:, 0] * self.sin_delta * self.cos_alpha - - self.obs_pos[:, 1] * self.sin_delta * self.sin_alpha - + self.obs_pos[:, 2] * self.cos_delta + -self.obs_pos[:, 0] * self.sin_lat * self.cos_long + - self.obs_pos[:, 1] * self.sin_lat * self.sin_long + + self.obs_pos[:, 2] * self.cos_lat ) def delta_sini_parallax(self): - """Reference (Kopeikin 1995 Eq 18) + """Reference (Kopeikin 1995 Eq 18). Computes: + + .. math:: + + x_{obs} = \\frac{a_p \sin(i)_{obs}}{c} + + Since :math:`a_p` and :math:`c` will not be changed by parallax: - Computes:: + .. math:: - x_obs = ap * sini_obs/c + x_{obs} = \\frac{a_p}{c}(\sin(i)_{\\rm intrisic} + \delta_{\sin(i)}) - Since ap and c will not be changed by parallax:: + \delta_{\sin(i)} = \sin(i)_{\\rm intrisic} \\frac{\cot(i)_{\\rm intrisic}}{d} (\Delta_{I0} \sin KOM - \Delta_{J0} \cos KOM) - x_obs = ap /c *(sini_intrisic + delta_sini) - delta_sini = sini_intrisic * coti_intrisic / d * (deltaI0 * sin_kom - deltaJ0 * cos_kom) """ PX_kpc = self.PX.to(u.kpc, equivalencies=u.parallax()) delta_sini = ( @@ -486,7 +544,7 @@ def d_delta_omega_parallax_d_T0(self): ) def a1_k(self, proper_motion=True, parallax=True): - """A function to compute Kopeikin corrected projected semi-major axis. + """Compute Kopeikin corrected projected semi-major axis. Parameters ---------- diff --git a/src/pint/models/timing_model.py b/src/pint/models/timing_model.py index 29505e03f..6d92906f7 100644 --- a/src/pint/models/timing_model.py +++ b/src/pint/models/timing_model.py @@ -36,8 +36,9 @@ import astropy.time as time import astropy.units as u import numpy as np -from astropy import log from astropy.utils.decorators import lazyproperty +import astropy.coordinates as coords +from pint.pulsar_ecliptic import OBL, PulsarEcliptic from scipy.optimize import brentq from loguru import logger as log @@ -2293,6 +2294,11 @@ def as_ECL(self, epoch=None, ecl="IERS2010"): ------- pint.models.timing_model.TimingModel In PulsarEcliptic frame + + Notes + ----- + For the ``DDK`` model, the ``KOM`` vector is also transformed + """ if "AstrometryEquatorial" in self.components: astrometry_model_type = "AstrometryEquatorial" @@ -2305,6 +2311,22 @@ def as_ECL(self, epoch=None, ecl="IERS2010"): new_model = copy.deepcopy(self) new_model.remove_component(astrometry_model_type) new_model.add_component(new_astrometry_model_component) + + if "BinaryDDK" in self.components and "AstrometryEquatorial" in self.components: + c = coords.SkyCoord( + lon=new_model.ELONG.quantity, + lat=new_model.ELAT.quantity, + obstime=self.POSEPOCH.quantity, + pm_lon_coslat=np.sin(self.KOM.quantity) * u.mas / u.yr, + pm_lat=np.cos(self.KOM.quantity) * u.mas / u.yr, + obliquity=OBL[new_model.ECL.value], + frame=PulsarEcliptic, + ) + c_ICRS = c.transform_to(coords.ICRS) + new_model.KOM.quantity = ( + np.arctan2(c_ICRS.pm_ra_cosdec.value, c_ICRS.pm_dec.value) * u.rad + ).to(self.KOM.units) + return new_model def as_ICRS(self, epoch=None): @@ -2320,6 +2342,10 @@ def as_ICRS(self, epoch=None): ------- pint.models.timing_model.TimingModel In ICRS frame + + Notes + ----- + For the ``DDK`` model, the ``KOM`` vector is also transformed """ if "AstrometryEquatorial" in self.components: astrometry_model_type = "AstrometryEquatorial" @@ -2332,6 +2358,21 @@ def as_ICRS(self, epoch=None): new_model = copy.deepcopy(self) new_model.remove_component(astrometry_model_type) new_model.add_component(new_astrometry_model_component) + + if "BinaryDDK" in self.components and "AstrometryEcliptic" in self.components: + c = coords.SkyCoord( + ra=new_model.RAJ.quantity, + dec=new_model.DECJ.quantity, + obstime=self.POSEPOCH.quantity, + pm_ra_cosdec=np.sin(self.KOM.quantity) * u.mas / u.yr, + pm_dec=np.cos(self.KOM.quantity) * u.mas / u.yr, + frame=coords.ICRS, + ) + c_ECL = c.transform_to(PulsarEcliptic(ecl=self.ECL.value)) + new_model.KOM.quantity = ( + np.arctan2(c_ECL.pm_lon_coslat.value, c_ECL.pm_lat.value) * u.rad + ).to(self.KOM.units) + return new_model diff --git a/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par new file mode 100644 index 000000000..d8af88a5a --- /dev/null +++ b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par @@ -0,0 +1,183 @@ +# Created: 2022-04-15T11:55:56.188915 +# PINT_version: 0.7+2007.g3ba2556c +# User: David Kaplan (kaplan) +# Host: plock +# OS: macOS-10.16-x86_64-i386-64bit +# Format: pint +PSR J1713+0747 +MODE 1 +EPHEM DE421 +CLK TT(BIPM2015) +UNITS TDB +START 53393.5600000000000001 +FINISH 57387.6630000000000000 +INFO -f +TIMEEPH FB90 +DILATEFREQ N +DMDATA N +NTOA 27571 +CHI2 0.0 +RAJ 17:13:49.53355031 1 0.00000057727246830927 +DECJ 7:47:37.48847685 1 0.00001419450415241618 +PMRA 4.925763856775273 1 0.002489055022551827 +PMDEC -3.9156180453775624 1 0.004087126752953659 +PX 0.8211 1 0.0258 +POSEPOCH 55391.0000000000000000 +F0 218.811843796082627 1 9.88e-14 +F1 -4.083888637248e-16 1 1.433249826455e-21 +PEPOCH 55391.0000000000000000 +CORRECT_TROPOSPHERE N +PLANET_SHAPIRO N +SOLARN0 0.0 +SWM 0.0 +DM 15.917131 +DMX 6.0 +DMX_0001 0.0001581076 1 0.015966649 +DMXR1_0001 53393.5513800000000000 +DMXR2_0001 53394.6168600000000001 +DMX_0002 0.0001312895 1 0.0159669931 +DMXR1_0002 53420.4772700000000000 +DMXR2_0002 53421.5005700000000001 +DMX_0003 0.0001440788 1 0.0159665103 +DMXR1_0003 53448.3922300000000000 +DMXR2_0003 53448.4519200000000000 +DMX_0004 0.000131003 1 0.0159670536 +DMXR1_0004 53505.2740400000000000 +DMXR2_0004 53505.3113000000000000 +DMX_0005 0.0002021636 1 0.0159673864 +DMXR1_0005 53569.0373200000000000 +DMXR2_0005 53569.1049500000000000 +DMX_0006 0.0001332537 1 0.0159676289 +DMXR1_0006 53628.8939400000000001 +DMXR2_0006 53628.9541299999999999 +DMX_0007 0.0001501226 1 0.0159672741 +DMXR1_0007 53686.7279300000000001 +DMXR2_0007 53686.7874300000000000 +DMX_0008 -6.81953e-05 1 0.0159677759 +DMXR1_0008 53715.6614600000000000 +DMXR2_0008 53715.7231300000000001 +DMX_0009 0.000177483 1 0.0159667996 +DMXR1_0009 53750.5603500000000000 +DMXR2_0009 53750.6188000000000000 +DMX_0010 0.0001124556 1 0.0159668222 +DMXR1_0010 53798.3329800000000000 +DMXR2_0010 53800.3661000000000000 +DMX_0011 0.0001476488 1 0.0159671075 +DMXR1_0011 53838.2289300000000000 +DMXR2_0011 53851.3209600000000000 +DMX_0012 0.0001862737 1 0.0159671677 +DMXR1_0012 53858.1788800000000000 +DMXR2_0012 53859.2002700000000000 +DMX_0013 0.000128688 1 0.0159671287 +DMXR1_0013 53889.0875200000000000 +DMXR2_0013 53891.2400500000000000 +DMX_0014 0.0001084415 1 0.0159673684 +DMXR1_0014 53918.0085000000000000 +DMXR2_0014 53919.0401000000000000 +DMX_0015 0.0001938115 1 0.0159675002 +DMXR1_0015 53967.9979900000000000 +DMXR2_0015 53981.8654100000000000 +DMX_0016 0.0001601668 1 0.0159662792 +DMXR1_0016 54008.8930600000000001 +DMXR2_0016 54013.7774900000000000 +DMX_0017 0.0001176278 1 0.0159671525 +DMXR1_0017 54035.6873200000000000 +DMXR2_0017 54043.8191600000000000 +DMX_0018 0.0001508801 1 0.0159670848 +DMXR1_0018 54064.6056400000000001 +DMXR2_0018 54072.6150400000000000 +DMX_0019 0.0001109195 1 0.0159667306 +DMXR1_0019 54092.6661199999999999 +DMXR2_0019 54101.5363600000000001 +DMX_0020 2.0115e-05 1 0.0159666748 +DMXR1_0020 54133.4559500000000001 +DMXR2_0020 54135.5704600000000000 +DMX_0021 -2.69677e-05 1 0.0159661531 +DMXR1_0021 54218.2258400000000000 +DMXR2_0021 54220.2108200000000000 +DMX_0022 6.53544e-05 1 0.0159670638 +DMXR1_0022 54356.9533799999999999 +DMXR2_0022 54357.0051200000000000 +DMX_0023 8.44819e-05 1 0.0159671724 +DMXR1_0023 54373.7595599999999999 +DMXR2_0023 54374.7908999999999999 +DMX_0024 4.15937e-05 1 0.0159667417 +DMXR1_0024 54400.6875100000000000 +DMXR2_0024 54401.7160299999999999 +DMX_0025 1.87877e-05 1 0.0159667009 +DMXR1_0025 54428.6244999999999999 +DMXR2_0025 54429.6290500000000000 +DMX_0026 1.11221e-05 1 0.0159667281 +DMXR1_0026 54462.5354100000000001 +DMXR2_0026 54472.6247600000000000 +DMX_0027 1.30712e-05 1 0.0159669864 +DMXR1_0027 54519.4618099999999999 +DMXR2_0027 54529.3729200000000000 +DMX_0028 -4.50723e-05 1 0.0159658526 +DMXR1_0028 54551.2834600000000000 +DMXR2_0028 54552.3103300000000000 +DMX_0029 -6.75115e-05 1 0.0159665567 +DMXR1_0029 54569.3571800000000000 +DMXR2_0029 54581.2507799999999999 +DMX_0030 -3.28259e-05 1 0.0159668299 +DMXR1_0030 54641.0454400000000000 +DMXR2_0030 54644.1897500000000000 +DMX_0031 3.35395e-05 1 0.0159667138 +DMXR1_0031 54672.9458300000000001 +DMXR2_0031 54678.0848300000000000 +BINARY DDK +PB 67.82512992243068 1 1.3525e-09 +PBDOT 0.0 +A1 32.342422803 1 1.1e-07 +A1DOT 0.0 +E 7.49406e-05 1 6e-10 +EDOT 0.0 +T0 55388.8362191749000000 1 0.0002469385 +OM 176.198458885014 1 0.00131067624 +OMDOT 0.0 +M2 0.283395 1 0.010423 +A0 0.0 +B0 0.0 +GAMMA 0.0 +DR 0.0 +DTH 0.0 +KIN 71.969 1 0.562 +KOM 83.1 1 1.8 +K96 Y +FD1 -0.00060236876 1 0.000132645245 +FD2 0.000575642947 1 0.000132978432 +FD3 -0.000357072311 1 8.79252546e-05 +FD4 0.000145598103 1 3.95713766e-05 +FD5 -3.10227443e-05 1 9.36494428e-06 +#T2EFAC -f Rcvr_800_GUPPI 1.067 +#T2EQUAD -f Rcvr_800_GUPPI 0.0481 +T2EFAC -f Rcvr1_2_GASP 1.079 +T2EFAC -f L-wide_ASP 1.018 +#T2EFAC -f Rcvr1_2_GUPPI 1.041 +T2EFAC -f S-wide_ASP 1.115 +T2EFAC -f Rcvr_800_GASP 1.085 +#T2EFAC -f L-wide_PUPPI 1.088 +#T2EFAC -f S-wide_PUPPI 1.116 +T2EQUAD -f Rcvr1_2_GASP 0.045 +T2EQUAD -f L-wide_ASP 0.029 +#T2EQUAD -f Rcvr1_2_GUPPI 0.0004 +T2EQUAD -f S-wide_ASP 0.0001 +T2EQUAD -f Rcvr_800_GASP 0.1343 +#T2EQUAD -f L-wide_PUPPI 0.0124 +#T2EQUAD -f S-wide_PUPPI 0.0158 +RNAMP 0.021246 +RNIDX -1.5809 +ECORR -f L-wide_ASP 0.0948 +#ECORR -f L-wide_PUPPI 0.0887 +ECORR -f Rcvr1_2_GASP 0.0926 +#ECORR -f Rcvr1_2_GUPPI 0.0786 +ECORR -f Rcvr_800_GASP 0.0163 +#ECORR -f Rcvr_800_GUPPI 0.264 +ECORR -f S-wide_ASP 0.1177 +#ECORR -f S-wide_PUPPI 0.0957 +TZRMJD 55395.9232798000827893 +TZRSITE 1 +TZRFRQ 850.468 +JUMP -fe Rcvr1_2 9.637e-06 1 6.9e-08 +JUMP -fe L-wide 1.9826e-05 1 6.9e-08 +JUMP -fe S-wide 2.775e-05 1 7.1e-08 diff --git a/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par.libstempo b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par.libstempo new file mode 100644 index 000000000..0827cddf7 --- /dev/null +++ b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par.libstempo @@ -0,0 +1,2002 @@ +# Created using libstempo on 2022-05-24T10:51:48.160109 +# TOA TOAerr FrequencyResidual BinaryDelay +53393.5587828842 0.178000 1430.000000 -8.258987e-06 -1.403934e+01 +53393.5587828842 0.194000 1426.000000 -8.637769e-06 -1.403934e+01 +53393.5587828842 0.198000 1422.000000 -8.595102e-06 -1.403934e+01 +53393.5587828842 0.207000 1418.000000 -8.268503e-06 -1.403934e+01 +53393.5587828842 0.230000 1414.000000 -8.677039e-06 -1.403934e+01 +53393.5587828842 0.150000 1410.000000 -8.482450e-06 -1.403934e+01 +53393.5587828842 0.125000 1406.000000 -8.428119e-06 -1.403934e+01 +53393.5587828842 0.137000 1402.000000 -8.661384e-06 -1.403934e+01 +53393.5587828842 0.135000 1398.000000 -8.159534e-06 -1.403934e+01 +53393.5587828842 0.159000 1394.000000 -8.309635e-06 -1.403934e+01 +53393.5587828842 0.177000 1390.000000 -8.424743e-06 -1.403934e+01 +53393.5587828842 0.181000 1386.000000 -8.780789e-06 -1.403934e+01 +53393.5587828842 0.172000 1382.000000 -8.479381e-06 -1.403934e+01 +53393.5587828842 0.160000 1378.000000 -8.303189e-06 -1.403934e+01 +53393.5587828842 0.151000 1374.000000 -8.253769e-06 -1.403934e+01 +53393.5587828842 0.147000 1370.000000 -8.605846e-06 -1.403934e+01 +53393.5624586795 0.353000 1430.000000 -7.463250e-06 -1.404926e+01 +53393.5624586795 0.376000 1426.000000 -7.993667e-06 -1.404926e+01 +53393.5624586794 0.440000 1422.000000 -8.614617e-06 -1.404926e+01 +53393.5624586795 0.399000 1418.000000 -7.611202e-06 -1.404926e+01 +53393.5624586794 0.439000 1414.000000 -8.781887e-06 -1.404926e+01 +53393.5624586794 0.282000 1410.000000 -8.065782e-06 -1.404926e+01 +53393.5624586794 0.249000 1406.000000 -8.175365e-06 -1.404926e+01 +53393.5624586794 0.267000 1402.000000 -8.409264e-06 -1.404926e+01 +53393.5624586794 0.238000 1398.000000 -8.410492e-06 -1.404926e+01 +53393.5624586794 0.257000 1394.000000 -8.442108e-06 -1.404926e+01 +53393.5624586795 0.308000 1390.000000 -7.785552e-06 -1.404926e+01 +53393.5624586794 0.286000 1386.000000 -8.511173e-06 -1.404926e+01 +53393.5624586795 0.295000 1382.000000 -7.945169e-06 -1.404926e+01 +53393.5624586795 0.274000 1378.000000 -7.914780e-06 -1.404926e+01 +53393.5624586794 0.256000 1374.000000 -8.103845e-06 -1.404926e+01 +53393.5624586795 0.253000 1370.000000 -7.960209e-06 -1.404926e+01 +53393.5702927411 0.113000 1430.000000 -8.283535e-06 -1.407039e+01 +53393.5702927411 0.106000 1426.000000 -8.273405e-06 -1.407039e+01 +53393.5702927411 0.103000 1422.000000 -8.280772e-06 -1.407039e+01 +53393.5702927411 0.088000 1418.000000 -8.307784e-06 -1.407039e+01 +53393.5702927411 0.101000 1414.000000 -8.318527e-06 -1.407039e+01 +53393.5702927411 0.086000 1410.000000 -8.284762e-06 -1.407039e+01 +53393.5702927411 0.085000 1406.000000 -8.479065e-06 -1.407039e+01 +53393.5702927411 0.085000 1402.000000 -8.165664e-06 -1.407039e+01 +53393.5702927411 0.063000 1398.000000 -8.238719e-06 -1.407039e+01 +53393.5702927411 0.059000 1394.000000 -8.204033e-06 -1.407039e+01 +53393.5702927411 0.065000 1390.000000 -8.234115e-06 -1.407039e+01 +53393.5702927411 0.062000 1386.000000 -8.283535e-06 -1.407039e+01 +53393.5702927411 0.078000 1382.000000 -8.200043e-06 -1.407039e+01 +53393.5702927411 0.068000 1378.000000 -8.207717e-06 -1.407039e+01 +53393.5702927411 0.068000 1374.000000 -8.285990e-06 -1.407039e+01 +53393.5702927411 0.064000 1370.000000 -8.356590e-06 -1.407039e+01 +53394.6041485068 0.168000 2382.000000 -8.246279e-06 -1.679048e+01 +53394.6041485068 0.168000 2378.000000 -8.038164e-06 -1.679048e+01 +53394.6041485068 0.162000 2374.000000 -8.073464e-06 -1.679048e+01 +53394.6041485068 0.153000 2370.000000 -8.091881e-06 -1.679048e+01 +53394.6041485068 0.156000 2366.000000 -8.388706e-06 -1.679048e+01 +53394.6041485068 0.147000 2362.000000 -8.337138e-06 -1.679048e+01 +53394.6041485068 0.143000 2358.000000 -8.150816e-06 -1.679048e+01 +53394.6041485068 0.141000 2354.000000 -8.318720e-06 -1.679048e+01 +53394.6041485068 0.141000 2350.000000 -8.141301e-06 -1.679048e+01 +53394.6041485068 0.145000 2346.000000 -8.420936e-06 -1.679048e+01 +53394.6041485068 0.140000 2342.000000 -8.261627e-06 -1.679048e+01 +53394.6041485068 0.131000 2338.000000 -8.142528e-06 -1.679048e+01 +53394.6041485068 0.173000 2334.000000 -8.213742e-06 -1.679048e+01 +53394.6041485068 0.573000 2330.000000 -7.381300e-06 -1.679048e+01 +53394.6041485068 0.150000 2326.000000 -8.278816e-06 -1.679048e+01 +53394.6041485068 0.225000 2322.000000 -8.027421e-06 -1.679048e+01 +53420.4866708166 0.354000 1442.000000 5.622941e-06 -6.361381e+00 +53420.4866708166 0.299000 1438.000000 5.671746e-06 -6.361381e+00 +53420.4866708166 0.319000 1434.000000 5.447670e-06 -6.361381e+00 +53420.4866708166 0.303000 1430.000000 5.548351e-06 -6.361381e+00 +53420.4866708166 0.348000 1426.000000 5.380447e-06 -6.361381e+00 +53420.4866708166 0.378000 1422.000000 5.307084e-06 -6.361381e+00 +53420.4866708166 0.511000 1418.000000 5.370931e-06 -6.361381e+00 +53420.4866708166 0.459000 1414.000000 5.021903e-06 -6.361381e+00 +53420.4866708166 0.470000 1410.000000 5.753725e-06 -6.361381e+00 +53420.4866708166 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+DMXF2_0001 2382.000 +DMX_0002 1.31289500D-04 1 1.59669931D-02 +DMXEP_0002 53420.48727 +DMXR1_0002 53420.47727 +DMXR2_0002 53421.50057 +DMXF1_0002 1382.000 +DMXF2_0002 2382.000 +DMX_0003 1.44078800D-04 1 1.59665103D-02 +DMXEP_0003 53448.40223 +DMXR1_0003 53448.39223 +DMXR2_0003 53448.45192 +DMXF1_0003 1382.000 +DMXF2_0003 2382.000 +DMX_0004 1.31003000D-04 1 1.59670536D-02 +DMXEP_0004 53505.28404 +DMXR1_0004 53505.27404 +DMXR2_0004 53505.31130 +DMXF1_0004 1382.000 +DMXF2_0004 2382.000 +DMX_0005 2.02163600D-04 1 1.59673864D-02 +DMXEP_0005 53569.04733 +DMXR1_0005 53569.03732 +DMXR2_0005 53569.10495 +DMXF1_0005 1414.000 +DMXF2_0005 2382.000 +DMX_0006 1.33253700D-04 1 1.59676289D-02 +DMXEP_0006 53628.90395 +DMXR1_0006 53628.89394 +DMXR2_0006 53628.95413 +DMXF1_0006 1382.000 +DMXF2_0006 2382.000 +DMX_0007 1.50122600D-04 1 1.59672741D-02 +DMXEP_0007 53686.73794 +DMXR1_0007 53686.72793 +DMXR2_0007 53686.78743 +DMXF1_0007 1382.000 +DMXF2_0007 2382.000 +DMX_0008 -6.81953000D-05 1 1.59677759D-02 +DMXEP_0008 53715.67147 +DMXR1_0008 53715.66146 +DMXR2_0008 53715.72313 +DMXF1_0008 1382.000 +DMXF2_0008 2382.000 +DMX_0009 1.77483000D-04 1 1.59667996D-02 +DMXEP_0009 53750.57036 +DMXR1_0009 53750.56035 +DMXR2_0009 53750.61880 +DMXF1_0009 1382.000 +DMXF2_0009 2382.000 +DMX_0010 1.12455600D-04 1 1.59668222D-02 +DMXEP_0010 53798.34298 +DMXR1_0010 53798.33298 +DMXR2_0010 53800.36610 +DMXF1_0010 792.000 +DMXF2_0010 1442.000 +DMX_0011 1.47648800D-04 1 1.59671075D-02 +DMXEP_0011 53838.23893 +DMXR1_0011 53838.22893 +DMXR2_0011 53851.32096 +DMXF1_0011 792.000 +DMXF2_0011 1442.000 +DMX_0012 1.86273700D-04 1 1.59671677D-02 +DMXEP_0012 53858.18889 +DMXR1_0012 53858.17888 +DMXR2_0012 53859.20027 +DMXF1_0012 792.000 +DMXF2_0012 1432.000 +DMX_0013 1.28688000D-04 1 1.59671287D-02 +DMXEP_0013 53889.09753 +DMXR1_0013 53889.08752 +DMXR2_0013 53891.24005 +DMXF1_0013 792.000 +DMXF2_0013 2378.000 +DMX_0014 1.08441500D-04 1 1.59673684D-02 +DMXEP_0014 53918.01850 +DMXR1_0014 53918.00850 +DMXR2_0014 53919.04010 +DMXF1_0014 792.000 +DMXF2_0014 1432.000 +DMX_0015 1.93811500D-04 1 1.59675002D-02 +DMXEP_0015 53968.00800 +DMXR1_0015 53967.99799 +DMXR2_0015 53981.86541 +DMXF1_0015 792.000 +DMXF2_0015 1442.000 +DMX_0016 1.60166800D-04 1 1.59662792D-02 +DMXEP_0016 54008.90306 +DMXR1_0016 54008.89306 +DMXR2_0016 54013.77749 +DMXF1_0016 824.000 +DMXF2_0016 2378.000 +DMX_0017 1.17627800D-04 1 1.59671525D-02 +DMXEP_0017 54035.69732 +DMXR1_0017 54035.68732 +DMXR2_0017 54043.81916 +DMXF1_0017 824.000 +DMXF2_0017 2378.000 +DMX_0018 1.50880100D-04 1 1.59670848D-02 +DMXEP_0018 54064.61564 +DMXR1_0018 54064.60564 +DMXR2_0018 54072.61504 +DMXF1_0018 824.000 +DMXF2_0018 1432.000 +DMX_0019 1.10919500D-04 1 1.59667306D-02 +DMXEP_0019 54092.67612 +DMXR1_0019 54092.66612 +DMXR2_0019 54101.53636 +DMXF1_0019 824.000 +DMXF2_0019 1442.000 +DMX_0020 2.01150000D-05 1 1.59666748D-02 +DMXEP_0020 54133.46596 +DMXR1_0020 54133.45595 +DMXR2_0020 54135.57046 +DMXF1_0020 824.000 +DMXF2_0020 2374.000 +DMX_0021 -2.69677000D-05 1 1.59661531D-02 +DMXEP_0021 54218.23584 +DMXR1_0021 54218.22584 +DMXR2_0021 54220.21082 +DMXF1_0021 824.000 +DMXF2_0021 1432.000 +DMX_0022 6.53544000D-05 1 1.59670638D-02 +DMXEP_0022 54356.96339 +DMXR1_0022 54356.95338 +DMXR2_0022 54357.00512 +DMXF1_0022 792.000 +DMXF2_0022 1432.000 +DMX_0023 8.44819000D-05 1 1.59671724D-02 +DMXEP_0023 54373.76957 +DMXR1_0023 54373.75956 +DMXR2_0023 54374.79090 +DMXF1_0023 824.000 +DMXF2_0023 1432.000 +DMX_0024 4.15937000D-05 1 1.59667417D-02 +DMXEP_0024 54400.69752 +DMXR1_0024 54400.68751 +DMXR2_0024 54401.71603 +DMXF1_0024 824.000 +DMXF2_0024 1432.000 +DMX_0025 1.87877000D-05 1 1.59667009D-02 +DMXEP_0025 54428.63450 +DMXR1_0025 54428.62450 +DMXR2_0025 54429.62905 +DMXF1_0025 824.000 +DMXF2_0025 1432.000 +DMX_0026 1.11221000D-05 1 1.59667281D-02 +DMXEP_0026 54462.54542 +DMXR1_0026 54462.53541 +DMXR2_0026 54472.62476 +DMXF1_0026 824.000 +DMXF2_0026 1434.000 +DMX_0027 1.30712000D-05 1 1.59669864D-02 +DMXEP_0027 54519.47182 +DMXR1_0027 54519.46181 +DMXR2_0027 54529.37292 +DMXF1_0027 824.000 +DMXF2_0027 2378.000 +DMX_0028 -4.50723000D-05 1 1.59658526D-02 +DMXEP_0028 54551.29346 +DMXR1_0028 54551.28346 +DMXR2_0028 54552.31033 +DMXF1_0028 824.000 +DMXF2_0028 1432.000 +DMX_0029 -6.75115000D-05 1 1.59665567D-02 +DMXEP_0029 54569.36719 +DMXR1_0029 54569.35718 +DMXR2_0029 54581.25078 +DMXF1_0029 824.000 +DMXF2_0029 1442.000 +DMX_0030 -3.28259000D-05 1 1.59668299D-02 +DMXEP_0030 54641.05545 +DMXR1_0030 54641.04544 +DMXR2_0030 54644.18975 +DMXF1_0030 824.000 +DMXF2_0030 1438.000 +DMX_0031 3.35395000D-05 1 1.59667138D-02 +DMXEP_0031 54672.95584 +DMXR1_0031 54672.94583 +DMXR2_0031 54678.08483 +DMXF1_0031 828.000 +DMXF2_0031 2378.000 +FD1 -6.02368760D-04 1 1.32645245D-04 +FD2 5.75642947D-04 1 1.32978432D-04 +FD3 -3.57072311D-04 1 8.79252546D-05 +FD4 1.45598103D-04 1 3.95713766D-05 +FD5 -3.10227443D-05 1 9.36494428D-06 +SOLARN0 0.00 +EPHEM DE421 +ECL IERS2003 +CLK TT(BIPM2015) +UNITS TDB +TIMEEPH FB90 +#T2CMETHOD TEMPO +CORRECT_TROPOSPHERE N +PLANET_SHAPIRO N +DILATEFREQ N +NTOA 27571 +TRES 0.18 +TZRMJD 55395.92327980008279 +TZRFRQ 850.468 +TZRSITE 1 +MODE 1 +NITS 1 +INFO -f +BINARY DDK +A1 32.342422803 1 0.000000110 +E 0.0000749406 1 0.0000000006 +T0 55388.8362191749 1 0.0002469385 +PB 67.82512992243068 1 0.00000000135250 +OM 176.198458885014 1 0.001310676240 +M2 0.283395 1 0.010423 +KOM 83.100 1 1.800 +KIN 71.969 1 0.562 +K96 1 +RNAMP 0.21246D-01 +RNIDX -1.58090 +#T2EFAC -f Rcvr_800_GUPPI 1.067 +T2EFAC -f Rcvr1_2_GASP 1.079 +T2EFAC -f L-wide_ASP 1.018 +#T2EFAC -f Rcvr1_2_GUPPI 1.041 +T2EFAC -f S-wide_ASP 1.115 +T2EFAC -f Rcvr_800_GASP 1.085 +#T2EFAC -f L-wide_PUPPI 1.088 +#T2EFAC -f S-wide_PUPPI 1.116 +#T2EQUAD -f Rcvr_800_GUPPI 0.04810 +T2EQUAD -f Rcvr1_2_GASP 0.04500 +T2EQUAD -f L-wide_ASP 0.02900 +#T2EQUAD -f Rcvr1_2_GUPPI 0.00040 +T2EQUAD -f S-wide_ASP 0.00010 +T2EQUAD -f Rcvr_800_GASP 0.13430 +#T2EQUAD -f L-wide_PUPPI 0.01240 +#T2EQUAD -f S-wide_PUPPI 0.01580 +ECORR -f L-wide_ASP 0.09480 +#ECORR -f L-wide_PUPPI 0.08870 +ECORR -f Rcvr1_2_GASP 0.09260 +#ECORR -f Rcvr1_2_GUPPI 0.07860 +ECORR -f Rcvr_800_GASP 0.01630 +#ECORR -f Rcvr_800_GUPPI 0.26400 +ECORR -f S-wide_ASP 0.11770 +#ECORR -f S-wide_PUPPI 0.09570 +JUMP -fe Rcvr1_2 0.000009637 1 0.000000069 +JUMP -fe L-wide 0.000019826 1 0.000000069 +JUMP -fe S-wide 0.000027750 1 0.000000071 +# Converted by make_release.py on Mon Mar 6 13:06:08 2017 by pdemores +# Original filename: 'J1713+0747/J1713+0747.djn12.par' +# Ran additional tempo iteration diff --git a/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.par.libstempo b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.par.libstempo new file mode 100644 index 000000000..a09eb24b6 --- /dev/null +++ b/tests/datafile/J1713+0747_NANOGrav_11yv0_short.gls.par.libstempo @@ -0,0 +1,2002 @@ +# Created using libstempo on 2022-05-24T10:51:47.704386 +# TOA TOAerr FrequencyResidual BinaryDelay +53393.5587828842 0.178000 1430.000000 -7.862150e-06 -1.403934e+01 +53393.5587828842 0.194000 1426.000000 -8.240625e-06 -1.403934e+01 +53393.5587828842 0.198000 1422.000000 -8.197958e-06 -1.403934e+01 +53393.5587828842 0.207000 1418.000000 -7.871359e-06 -1.403934e+01 +53393.5587828842 0.230000 1414.000000 -8.280201e-06 -1.403934e+01 +53393.5587828842 0.150000 1410.000000 -8.085306e-06 -1.403934e+01 +53393.5587828842 0.125000 1406.000000 -8.031282e-06 -1.403934e+01 +53393.5587828842 0.137000 1402.000000 -8.264240e-06 -1.403934e+01 +53393.5587828842 0.135000 1398.000000 -7.762390e-06 -1.403934e+01 +53393.5587828842 0.159000 1394.000000 -7.912491e-06 -1.403934e+01 +53393.5587828842 0.177000 1390.000000 -8.027905e-06 -1.403934e+01 +53393.5587828842 0.181000 1386.000000 -8.383645e-06 -1.403934e+01 +53393.5587828842 0.172000 1382.000000 -8.082543e-06 -1.403934e+01 +53393.5587828842 0.160000 1378.000000 -7.906044e-06 -1.403934e+01 +53393.5587828842 0.151000 1374.000000 -7.856625e-06 -1.403934e+01 +53393.5587828842 0.147000 1370.000000 -8.208702e-06 -1.403934e+01 +53393.5624586795 0.353000 1430.000000 -7.066504e-06 -1.404926e+01 +53393.5624586795 0.376000 1426.000000 -7.596615e-06 -1.404926e+01 +53393.5624586794 0.440000 1422.000000 -8.217564e-06 -1.404926e+01 +53393.5624586795 0.399000 1418.000000 -7.214149e-06 -1.404926e+01 +53393.5624586794 0.439000 1414.000000 -8.384835e-06 -1.404926e+01 +53393.5624586794 0.282000 1410.000000 -7.668729e-06 -1.404926e+01 +53393.5624586794 0.249000 1406.000000 -7.778312e-06 -1.404926e+01 +53393.5624586794 0.267000 1402.000000 -8.012212e-06 -1.404926e+01 +53393.5624586794 0.238000 1398.000000 -8.013439e-06 -1.404926e+01 +53393.5624586794 0.257000 1394.000000 -8.045056e-06 -1.404926e+01 +53393.5624586795 0.308000 1390.000000 -7.388500e-06 -1.404926e+01 +53393.5624586794 0.286000 1386.000000 -8.114120e-06 -1.404926e+01 +53393.5624586795 0.295000 1382.000000 -7.548116e-06 -1.404926e+01 +53393.5624586795 0.274000 1378.000000 -7.517727e-06 -1.404926e+01 +53393.5624586794 0.256000 1374.000000 -7.706792e-06 -1.404926e+01 +53393.5624586795 0.253000 1370.000000 -7.563464e-06 -1.404926e+01 +53393.5702927411 0.113000 1430.000000 -7.886984e-06 -1.407039e+01 +53393.5702927411 0.106000 1426.000000 -7.876548e-06 -1.407039e+01 +53393.5702927411 0.103000 1422.000000 -7.883915e-06 -1.407039e+01 +53393.5702927411 0.088000 1418.000000 -7.910927e-06 -1.407039e+01 +53393.5702927411 0.101000 1414.000000 -7.921670e-06 -1.407039e+01 +53393.5702927411 0.086000 1410.000000 -7.887905e-06 -1.407039e+01 +53393.5702927411 0.085000 1406.000000 -8.082207e-06 -1.407039e+01 +53393.5702927411 0.085000 1402.000000 -7.768807e-06 -1.407039e+01 +53393.5702927411 0.063000 1398.000000 -7.841862e-06 -1.407039e+01 +53393.5702927411 0.059000 1394.000000 -7.807483e-06 -1.407039e+01 +53393.5702927411 0.065000 1390.000000 -7.837258e-06 -1.407039e+01 +53393.5702927411 0.062000 1386.000000 -7.886677e-06 -1.407039e+01 +53393.5702927411 0.078000 1382.000000 -7.803493e-06 -1.407039e+01 +53393.5702927411 0.068000 1378.000000 -7.810860e-06 -1.407039e+01 +53393.5702927411 0.068000 1374.000000 -7.889133e-06 -1.407039e+01 +53393.5702927411 0.064000 1370.000000 -7.959732e-06 -1.407039e+01 +53394.6041485068 0.168000 2382.000000 -7.876863e-06 -1.679048e+01 +53394.6041485068 0.168000 2378.000000 -7.668748e-06 -1.679048e+01 +53394.6041485068 0.162000 2374.000000 -7.704355e-06 -1.679048e+01 +53394.6041485068 0.153000 2370.000000 -7.722465e-06 -1.679048e+01 +53394.6041485068 0.156000 2366.000000 -8.019597e-06 -1.679048e+01 +53394.6041485068 0.147000 2362.000000 -7.967722e-06 -1.679048e+01 +53394.6041485068 0.143000 2358.000000 -7.781400e-06 -1.679048e+01 +53394.6041485068 0.141000 2354.000000 -7.949305e-06 -1.679048e+01 +53394.6041485068 0.141000 2350.000000 -7.771885e-06 -1.679048e+01 +53394.6041485068 0.145000 2346.000000 -8.051520e-06 -1.679048e+01 +53394.6041485068 0.140000 2342.000000 -7.892518e-06 -1.679048e+01 +53394.6041485068 0.131000 2338.000000 -7.773113e-06 -1.679048e+01 +53394.6041485068 0.173000 2334.000000 -7.844326e-06 -1.679048e+01 +53394.6041485068 0.573000 2330.000000 -7.012191e-06 -1.679048e+01 +53394.6041485068 0.150000 2326.000000 -7.909400e-06 -1.679048e+01 +53394.6041485068 0.225000 2322.000000 -7.658005e-06 -1.679048e+01 +53420.4866708166 0.354000 1442.000000 5.199406e-06 -6.361381e+00 +53420.4866708166 0.299000 1438.000000 5.248518e-06 -6.361381e+00 +53420.4866708166 0.319000 1434.000000 5.024442e-06 -6.361381e+00 +53420.4866708166 0.303000 1430.000000 5.125123e-06 -6.361381e+00 +53420.4866708166 0.348000 1426.000000 4.957219e-06 -6.361381e+00 +53420.4866708166 0.378000 1422.000000 4.883550e-06 -6.361381e+00 +53420.4866708166 0.511000 1418.000000 4.947396e-06 -6.361381e+00 +53420.4866708166 0.459000 1414.000000 4.598368e-06 -6.361381e+00 +53420.4866708166 0.470000 1410.000000 5.330190e-06 -6.361381e+00 +53420.4866708166 0.477000 1406.000000 5.487964e-06 -6.361381e+00 +53420.4866708166 0.621000 1402.000000 4.917008e-06 -6.361381e+00 +53420.4866708166 1.048000 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2.201000 1416.000000 -8.782432e-07 1.289845e+01 diff --git a/tests/datafile/get_tempo2_result.py b/tests/datafile/get_tempo2_result.py index 5015e4504..d55564e54 100644 --- a/tests/datafile/get_tempo2_result.py +++ b/tests/datafile/get_tempo2_result.py @@ -1,7 +1,7 @@ """This is a script for getting tempo/tempo2/libstempo result for the propose of testing PINT """ -from pint.utils import longdouble2str +# from pint.utils import longdouble2str try: import tempo2_utils as t2u @@ -47,10 +47,10 @@ def get_tempo2_result(parfile, timfile, general2=None): outstr += "\n" f.write(outstr) for ii in range(len(residuals)): - outstr = longdouble2str(residuals[ii]) + " " + outstr = str(residuals[ii]) + " " if general2 is not None: for keys in general2: - outstr += longdouble2str(tempo2_vals[keys][ii]) + " " + outstr += str(tempo2_vals[keys][ii]) + " " outstr += "\n" f.write(outstr) f.close() diff --git a/tests/datafile/make_J1713_libstempo.py b/tests/datafile/make_J1713_libstempo.py new file mode 100644 index 000000000..0b5845ab8 --- /dev/null +++ b/tests/datafile/make_J1713_libstempo.py @@ -0,0 +1,26 @@ +import libstempo as T +import numpy as np +import datetime + +timJ1713 = "J1713+0747_NANOGrav_11yv0_short.tim" +# one file in ICRS, one in ECL +parfiles = [ + "J1713+0747_NANOGrav_11yv0_short.gls.par", + "J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par", +] +for parfile in parfiles: + print(f"Parfile {parfile}") + psr = T.tempopulsar(parfile=parfile, timfile=timJ1713) + x = np.array( + [psr.toas(), psr.toaerrs, psr.freqs, psr.residuals(), psr.binarydelay()] + ) + fout = open(parfile + ".libstempo", "w") + fout.write( + "# Created using libstempo on %s\n" % datetime.datetime.now().isoformat() + ) + fout.write("# TOA TOAerr FrequencyResidual BinaryDelay\n") + for i in range(psr.nobs): + fout.write( + "%.10f %f %f %e %e\n" % (x[0, i], x[1, i], x[2, i], x[3, i], x[4, i]) + ) + fout.close() diff --git a/tests/test_ddk.py b/tests/test_ddk.py index 62f889d24..31dbb429a 100644 --- a/tests/test_ddk.py +++ b/tests/test_ddk.py @@ -17,10 +17,13 @@ from loguru import logger as log import pint.models.model_builder as mb +from pint.models import get_model +import pint.simulation import pint.toa as toa from pint.models.parameter import boolParameter from pint.models.timing_model import MissingParameter, TimingModelError from pint.residuals import Residuals +import pint.fitter temp_par_str = """ PSR J1713+0747 @@ -44,73 +47,119 @@ class TestDDK(unittest.TestCase): - """Compare delays from the dd model with libstempo and PINT""" + """Compare delays from the ddk model with libstempo and PINT""" @classmethod def setUpClass(cls): - cls.parfileJ1713 = "J1713+0747_NANOGrav_11yv0.gls.par" + cls.parfileJ1713 = "J1713+0747_NANOGrav_11yv0_short.gls.par" + cls.ICRSparfileJ1713 = "J1713+0747_NANOGrav_11yv0_short.gls.ICRS.par" cls.timJ1713 = "J1713+0747_NANOGrav_11yv0_short.tim" cls.toasJ1713 = toa.get_TOAs( os.path.join(datadir, cls.timJ1713), ephem="DE421", planets=False ) - cls.toasJ1713.table.sort("index") - cls.modelJ1713 = mb.get_model(os.path.join(datadir, cls.parfileJ1713)) + index = cls.toasJ1713.table["index"] + cls.ECLmodelJ1713 = mb.get_model(os.path.join(datadir, cls.parfileJ1713)) + cls.ICRSmodelJ1713 = mb.get_model(os.path.join(datadir, cls.ICRSparfileJ1713)) # libstempo result - cls.ltres, cls.ltbindelay = np.genfromtxt( - os.path.join(datadir, cls.parfileJ1713 + ".tempo_test"), unpack=True + # calculate using: datafile/make_J1713_libstempo.py + # make sure to sort to agree with the grouped TOAs + ( + cls.ECLltt, + cls.ECLltdt, + cls.ECLltf, + cls.ECLltres, + cls.ECLltbindelay, + ) = np.genfromtxt( + os.path.join(datadir, cls.parfileJ1713 + ".libstempo"), unpack=True + )[ + :, index + ] + ( + cls.ICRSltt, + cls.ICRSltdt, + cls.ICRSltf, + cls.ICRSltres, + cls.ICRSltbindelay, + ) = np.genfromtxt( + os.path.join(datadir, cls.ICRSparfileJ1713 + ".libstempo"), unpack=True + )[ + :, index + ] + + def test_J1713_ECL_binary_delay(self): + # Calculate delays with PINT + pint_binary_delay = self.ECLmodelJ1713.binarymodel_delay(self.toasJ1713, None) + print(f"{np.abs(pint_binary_delay.value + self.ECLltbindelay).max()}") + assert np.all(np.abs(pint_binary_delay.value + self.ECLltbindelay) < 5e-6), ( + "DDK J1713 ECL BINARY DELAY TEST FAILED: max difference is %e" + % np.abs(pint_binary_delay.value + self.ECLltbindelay).max() ) - def test_J1713_binary_delay(self): + def test_J1713_ICRS_binary_delay(self): # Calculate delays with PINT - # NOTE tempo and PINT has different definition of parameter KOM. So lower the - # threshold - pint_binary_delay = self.modelJ1713.binarymodel_delay(self.toasJ1713, None) - assert np.all( - np.abs(pint_binary_delay.value + self.ltbindelay) < 5e-7 - ), "DDK J1713 TEST FAILED" - - def test_J1713(self): - log = logging.getLogger("TestJ1713.test_J1713") + pint_binary_delay = self.ICRSmodelJ1713.binarymodel_delay(self.toasJ1713, None) + print(f"{np.abs(pint_binary_delay.value + self.ECLltbindelay).max()}") + assert np.all(np.abs(pint_binary_delay.value + self.ECLltbindelay) < 6e-6), ( + "DDK J1713 ICRS BINARY DELAY TEST FAILED: max difference is %e" + % np.abs(pint_binary_delay.value + self.ICRSltbindelay).max() + ) + + def test_J1713_ECL(self): pint_resids_us = Residuals( - self.toasJ1713, self.modelJ1713, use_weighted_mean=False + self.toasJ1713, self.ECLmodelJ1713, use_weighted_mean=False ).time_resids.to(u.s) - diff = pint_resids_us.value - self.ltres - log.debug("Max diff %lf" % np.abs(diff - diff.mean()).max()) - assert np.all(np.abs(diff - diff.mean()) < 5e-7), "DDK J1713 TEST FAILED" + diff = pint_resids_us.value - self.ECLltres + print("Max diff %e" % np.abs(diff - diff.mean()).max()) + assert np.all(np.abs(diff - diff.mean()) < 2e-8), ( + "DDK J1713 ECL RESIDUAL TEST FAILED: max difference is %e" + % np.abs(diff - diff.mean()).max() + ) + + def test_J1713_ICRS(self): + pint_resids_us = Residuals( + self.toasJ1713, self.ICRSmodelJ1713, use_weighted_mean=False + ).time_resids.to(u.s) + diff = pint_resids_us.value - self.ICRSltres + print("Max diff %e" % np.abs(diff - diff.mean()).max()) + assert np.all(np.abs(diff - diff.mean()) < 2e-8), ( + "DDK J1713 ICRS RESIDUAL TEST FAILED: max difference is %e" + % np.abs(diff - diff.mean()).max() + ) def test_change_px(self): - self.modelJ1713.update_binary_object(toas=self.toasJ1713) - assert self.modelJ1713.binary_instance.PX.value == self.modelJ1713.PX.value - bdelay0 = self.modelJ1713.binary_instance.binary_delay() - b_time0 = self.modelJ1713.binary_instance.t + self.ECLmodelJ1713.update_binary_object(toas=self.toasJ1713) + assert ( + self.ECLmodelJ1713.binary_instance.PX.value == self.ECLmodelJ1713.PX.value + ) + bdelay0 = self.ECLmodelJ1713.binary_instance.binary_delay() + b_time0 = self.ECLmodelJ1713.binary_instance.t # Change PX value - self.modelJ1713.PX.value = 0.1 - self.modelJ1713.update_binary_object(None) - b_time1 = self.modelJ1713.binary_instance.t - assert self.modelJ1713.binary_instance.PX.value == 0.1 + self.ECLmodelJ1713.PX.value = 0.1 + self.ECLmodelJ1713.update_binary_object(None) + b_time1 = self.ECLmodelJ1713.binary_instance.t + assert self.ECLmodelJ1713.binary_instance.PX.value == 0.1 # The stand alone binary model's input time should not change assert np.all(b_time0 == b_time1) # Check if the time residual changed - bdelay1 = self.modelJ1713.binary_instance.binary_delay() + bdelay1 = self.ECLmodelJ1713.binary_instance.binary_delay() diff = bdelay0 - bdelay1 assert np.all(diff != 0) def test_J1713_deriv(self): - log = logging.getLogger("TestJ1713.derivative_test") - testp = tdu.get_derivative_params(self.modelJ1713) - delay = self.modelJ1713.delay(self.toasJ1713) + testp = tdu.get_derivative_params(self.ECLmodelJ1713) + delay = self.ECLmodelJ1713.delay(self.toasJ1713) for p in testp.keys(): # Only check the binary parameters - if p not in self.modelJ1713.binary_instance.binary_params: + if p not in self.ECLmodelJ1713.binary_instance.binary_params: continue if p in ["PX", "PMRA", "PMDEC"]: continue - par = getattr(self.modelJ1713, p) + par = getattr(self.ECLmodelJ1713, p) if isinstance(par, boolParameter): continue - log.debug("Runing derivative for %s", "d_phase_d_" + p) - ndf = self.modelJ1713.d_phase_d_param_num(self.toasJ1713, p, testp[p]) - adf = self.modelJ1713.d_phase_d_param(self.toasJ1713, delay, p) + print("Runing derivative for %s" % ("d_phase_d_" + p)) + ndf = self.ECLmodelJ1713.d_phase_d_param_num(self.toasJ1713, p, testp[p]) + adf = self.ECLmodelJ1713.d_phase_d_param(self.toasJ1713, delay, p) diff = adf - ndf if not np.all(diff.value) == 0.0: mean_der = (adf + ndf) / 2.0 @@ -126,7 +175,7 @@ def test_J1713_deriv(self): tol = 0.04 else: tol = 1e-3 - log.debug( + print( "derivative relative diff for %s, %lf" % ("d_phase_d_" + p, np.nanmax(relative_diff).value) ) @@ -135,16 +184,61 @@ def test_J1713_deriv(self): continue def test_K96(self): - modelJ1713 = copy.deepcopy(self.modelJ1713) + modelJ1713 = copy.deepcopy(self.ECLmodelJ1713) log = logging.getLogger("TestJ1713 Switch of K96") modelJ1713.K96.value = False res = Residuals( self.toasJ1713, modelJ1713, use_weighted_mean=False ).time_resids.to(u.s) - delay = self.modelJ1713.delay(self.toasJ1713) + delay = self.ECLmodelJ1713.delay(self.toasJ1713) testp = tdu.get_derivative_params(modelJ1713) for p in testp.keys(): - self.modelJ1713.d_phase_d_param(self.toasJ1713, delay, p) + self.ECLmodelJ1713.d_phase_d_param(self.toasJ1713, delay, p) + + +def test_ddk_ECL_ICRS(): + mECL = get_model(StringIO(temp_par_str + "\n KIN 71.969 1 0.562")) + print( + f"Simulated TOAs in ECL with (KIN,KOM) = ({mECL.KIN.quantity},{mECL.KOM.quantity})" + ) + tECL = pint.simulation.make_fake_toas_uniform( + 50000, 60000, 100, mECL, error=0.5 * u.us, add_noise=True + ) + prefit = Residuals(tECL, mECL) + print(f"Prefit chi^2 in ECL {prefit.calc_chi2()}") + # get proper motion vector and normalize + pm_ECL = np.array( + [mECL.coords_as_ECL().pm_lon_coslat.value, mECL.coords_as_ECL().pm_lat.value] + ) + pm_ECL /= np.sqrt(np.dot(pm_ECL, pm_ECL)) + + mICRS = mECL.as_ICRS() + pm_ICRS = np.array( + [mICRS.coords_as_ICRS().pm_ra_cosdec.value, mICRS.coords_as_ICRS().pm_dec.value] + ) + pm_ICRS /= np.sqrt(np.dot(pm_ICRS, pm_ICRS)) + # get the angle between proper motion vectors, which should be the difference between KOMs + angle = np.arccos(np.dot(pm_ECL, pm_ICRS)) * u.rad + + new_KOM = mICRS.KOM.quantity + mICRS.KOM.quantity = mECL.KOM.quantity + rICRS = Residuals(tECL, mICRS) + print( + f"Prefit chi^2 in ICRS with the same KOM ({mICRS.KOM.quantity}) {rICRS.calc_chi2()}" + ) + mICRS_newKOM = mECL.as_ICRS() + rICRS_newKOM = Residuals(tECL, mICRS_newKOM) + print( + f"Change KOM by {angle.to(u.deg)} to {mICRS_newKOM.KOM.quantity}, now chi^2 in ICRS is {rICRS_newKOM.calc_chi2()}" + ) + # fitting with the wrong KOM should be bad + assert rICRS.calc_chi2() - prefit.calc_chi2() > 10 + # and with the new KOM they should be close + assert np.isclose(rICRS_newKOM.calc_chi2(), prefit.calc_chi2()) + + # check that round-trip is OK + mECL_transformed = mICRS_newKOM.as_ECL() + assert np.isclose(mECL_transformed.KOM.quantity, mECL.KOM.quantity) @pytest.mark.xfail(reason="model builder does not reject invalid parameters but should")