pymeasure_CI.yml

name: PyMeasure CI
on:
  push:
    branches:
      - master
      - develop
  pull_request:

jobs:
  docs_lint:
    name: Docs and Linting
    runs-on: "ubuntu-latest"
    defaults:
      run:
        shell: bash -l {0}
    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0
      - name: Install pymeasure requirements
        uses: mamba-org/setup-micromamba@v1
        with:
          environment-file: .github/pymeasure.yml
          cache-environment-key: pylatest-ubuntu-latest-mamba-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }}
          cache-downloads: false
      - name: Python and Mamba version
        run: |
          python --version
          micromamba info
      - name: Set up flake8 annotations
        uses: rbialon/flake8-annotations@v1
      - name: Lint with flake8
        run: |
          # Be sure to check for Python syntax errors or undefined names
          flake8 . --count --extend-select=E9,F63,F7,F82 --show-source --statistics
      - uses: ammaraskar/sphinx-problem-matcher@master
      - name: Generate docs
        if: always()  # run even if the previous step failed
        working-directory: ./docs
        run: |
          echo "::add-matcher::.github/sphinx.json"
          make html SPHINXOPTS="-W --keep-going"
      - name: Run doctests
        if: always()  # run even if the previous step failed
        working-directory: ./docs
        run: |
          echo "::add-matcher::.github/sphinx.json"
          make doctest SPHINXOPTS="-W --keep-going"

  test_coverage:
    name: Code Coverage on codecov
    runs-on: "ubuntu-latest"
    defaults:
      run:
        shell: bash -l {0}
    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0
      - name: Install pymeasure requirements
        uses: mamba-org/setup-micromamba@v1
        with:
          environment-file: .github/pymeasure.yml
          create-args: python=${{ matrix.python-version }}
          cache-environment-key: py${{ matrix.python-version }}-${{ matrix.os }}-mamba-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }}
          cache-downloads: false
      - name: Python version
        run: python --version
      - name: Install Pymeasure
        run: pip install -e .[tests]  # editable for covtest
      - name: Pymeasure version
        run: python -c "import pymeasure;print(pymeasure.__version__)"
      - name: Test for Coverage
        # xvfb for graphical interface
        run: |
          echo "::add-matcher::.github/pytest.json"
          xvfb-run -a pytest --cov=pymeasure --cov-report=xml
      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v4
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          fail_ci_if_error: true
          files: ./coverage.xml,!./cache
          flags: unittests
          name: codecov-umbrella
          verbose: true

  test:
    name: Python ${{ matrix.python-version }}, ${{ matrix.os }}
    runs-on: ${{ matrix.os }}
    defaults:
      run:
        shell: bash -l {0}
    strategy:
      fail-fast: true
      matrix:
        os: ["ubuntu-latest", "macos-latest", "windows-latest"]
        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0
      - name: Install pymeasure requirements
        uses: mamba-org/setup-micromamba@v1
        with:
          # ternary operator: if python-version == 3.12 use pymeasure_python312.yml else use pymeasure.yml
          environment-file: ${{ matrix.python-version == '3.12' && '.github/pymeasure_python312.yml' || '.github/pymeasure.yml'}}
          create-args: python=${{ matrix.python-version }}
          cache-environment-key: py${{ matrix.python-version }}-${{ matrix.os }}-mamba-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }}
          cache-downloads: false
      - name: Python version
        run: python --version
      - name: Install Pymeasure
        # If the pytest problem matcher stops working because of bad paths, do an editable install
        run: pip install .[tests]
      - name: Pymeasure version
        run: python -c "import pymeasure;print(pymeasure.__version__)"
      - name: Run pytest with xvfb
        if: runner.os == 'Linux'
        run: |
          echo "::add-matcher::.github/pytest.json"
          xvfb-run -a pytest
      - name: Run pytest
        if: runner.os != 'Linux'
        run: |
          echo "::add-matcher::.github/pytest.json"
          pytest


  test_numpy2:
    name: Python 3.11, ubuntu-latest, numpy>=2
    runs-on: "ubuntu-latest"
    defaults:
      run:
        shell: bash -l {0}
    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0
      - name: Install pymeasure requirements
        uses: mamba-org/setup-micromamba@v1
        with:
          environment-file: .github/pymeasure_numpy2.yml
          create-args: python=3.11
          cache-environment-key: py3.11-ubuntu-latest-mamba-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }}
          cache-downloads: false
      - name: Python version
        run: python --version
      - name: Install Pymeasure
        # If the pytest problem matcher stops working because of bad paths, do an editable install
        run: pip install .[tests]
      - name: Pymeasure version
        run: python -c "import pymeasure;print(pymeasure.__version__)"
      - name: Run pytest with xvfb
        run: |
          echo "::add-matcher::.github/pytest.json"
          xvfb-run -a pytest