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R CMD check results

0 errors ✓ | 0 warnings ✓ | 0 notes ✓

Update to version 0.3.1

Added new features:

  • Save and restore settings from within the shiny interface.
  • Option to export millions of points as embedded raster bitmap while other plotting elements (axes, titles, labels and lines etc) are preserved as vector objects.

Update

Update to version 0.2.7. In this version we have:

  • Added a new plotting feature for log p-value QQ plots.

  • Fixed bugs relating to use of matrices.

Update

This is an update to version 0.2.4. In this version we have:

  • Added a feature to allow the option for label text, line and box colours to match colour of each point

  • Enabled optional return value of plotly objects from easylabel()

  • Fixed bugs in MA plot

Update

This is an update to new version 0.2.2. In this version I have:

  • Added a new feature to plot Manhattan plots using a new function easyManhattan()

  • Improved stability in the shiny app

Resubmission

This is a resubmission. In this version I have:

  • Fixed the description to refer to 'shiny' and 'plotly' in single quotes and used lower case for 'shiny' and 'plotly'.

  • \value{No return value} has been added to: easylabel.Rd easyMAplot.Rd easyVolcano.Rd

  • \dontrun{} has been removed from the examples. The example is a 'shiny' app and user interactive, and therefore never completes unless there is user intervention. But it is enclosed in if(interactive()) { ... }

  • Lines 531 and 532 of easylabel.R have been changed to the following, before the call to change par() which occurs in line 533: oldpar <- par(no.readonly = TRUE) # line 531 on.exit(par(oldpar)) # line 532 par( ... ) # line 533

RHub check_for_cran results

2 NOTES

  • checking package dependencies ... NOTE Packages suggested but not available for checking: 'AnnotationDbi', 'org.Hs.eg.db', 'qvalue'
  • checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: 'AnnotationDbi'

I have included requireNamespace() checks for all 3 Bioconductor packages with warning messages giving instructions on installation from Bioconductor.

Downstream dependencies

There are currently no downstream dependencies for this package