From 6ba09c50172d57cce224143d051243f54252216d Mon Sep 17 00:00:00 2001 From: Jonathan Bisson Date: Thu, 10 Jun 2021 17:19:49 -0500 Subject: [PATCH] Add a link to the source code --- app.py | 25 +++++++++++++------------ 1 file changed, 13 insertions(+), 12 deletions(-) diff --git a/app.py b/app.py index a629d54..eecfd4a 100644 --- a/app.py +++ b/app.py @@ -45,6 +45,7 @@ dbc.NavItem(dbc.NavLink("Report Feedback", href="https://docs.google.com/forms/d/e/1FAIpQLSf1-sw-P0SQGokyeaOpEmLda0UPJW93qkrI8rfp7D46fHVi6g/viewform?usp=sf_link")), dbc.NavItem(dbc.NavLink("Preprint Publication", href="https://chemrxiv.org/articles/preprint/NPClassifier_A_Deep_Neural_Network-Based_Structural_Classification_Tool_for_Natural_Products/12885494/1")), dbc.NavItem(dbc.NavLink("API", href="https://ccms-ucsd.github.io/GNPSDocumentation/api/#structure-np-classifier")), + dbc.NavItem(dbc.NavLink("Source code", href="https://github.com/mwang87/NP-Classifier")) ], navbar=True) ], @@ -101,7 +102,7 @@ def display_page(pathname): else: return "CC1C(O)CC2C1C(OC1OC(COC(C)=O)C(O)C(O)C1O)OC=C2C(O)=O" -# This function will rerun at any +# This function will rerun at any @app.callback( [Output('classification_table', 'children'), Output('structure', 'children')], [Input('smiles_string', 'value')], @@ -162,7 +163,7 @@ def handle_smiles(smiles_string): return [table_fig, img_obj] -# This function will rerun at any +# This function will rerun at any @app.callback( [Output('usage_summary', 'children')], [Input('url', 'pathname')], @@ -237,16 +238,16 @@ def classify_structure(smiles): pathway_result = [] # Voting on Answer - pathway_result, superclass_result, class_result, isglycoside = prediction_voting.vote_classification(n_path, - n_class, - n_super, + pathway_result, superclass_result, class_result, isglycoside = prediction_voting.vote_classification(n_path, + n_class, + n_super, pred_class, - pred_super, - path_from_class, - path_from_superclass, - isglycoside, + pred_super, + path_from_class, + path_from_superclass, + isglycoside, ontology_dictionary) - + return isglycoside, class_result, superclass_result, pathway_result, path_from_class, path_from_superclass, n_path, fp1, fp2 @@ -264,7 +265,7 @@ def _process_full_classification(smiles_string): respond_dict["superclass_results"] = superclass_results respond_dict["pathway_results"] = pathway_results respond_dict["isglycoside"] = isglycoside - + respond_dict["fp1"] = fp1 respond_dict["fp2"] = fp2 @@ -277,7 +278,7 @@ def _process_full_classification(smiles_string): ) except: pass - + return respond_dict