forked from HUPO-PSI/psi-ms-CV
-
Notifications
You must be signed in to change notification settings - Fork 0
/
GO_xrefs.xrf_abbs
2657 lines (2334 loc) · 105 KB
/
GO_xrefs.xrf_abbs
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
!date: 2019/01/27 16:10:02
!
!WARNING: This file is READ-ONLY. Any changes will be overwritten.
!WARNING: The upstream read/write version is available at:
!WARNING: https://github.com/geneontology/go-site/blob/master/metadata/db-xrefs.yaml
!
!Gene Ontology
!Abbreviations for cross-referenced databases.
!
!Note that URLs are not necessarily stable entities and that some
!databases may have many other access routes or mirror sites.
!
!This data is available as a web page at
!http://amigo.geneontology.org/xrefs
abbreviation: AgBase
database: AgBase resource for functional analysis of agricultural plant and animal gene products
generic_url: http://www.agbase.msstate.edu/
url_syntax: http://www.agbase.msstate.edu/cgi-bin/getEntry.pl?db_pick=[ChickGO/MaizeGO]&uid=[example_id]
entity_type: BET:0000000 ! entity
abbreviation: AGI_LocusCode
database: Arabidopsis Genome Initiative
description: Comprises TAIR, TIGR and MIPS
generic_url: http://www.arabidopsis.org
local_id_syntax: A[Tt][MmCc0-5][Gg][0-9]{5}(\.[0-9]{1})?
url_syntax: http://arabidopsis.org/servlets/TairObject?type=locus&name=[example_id]
example_id: AGI_LocusCode:At2g17950
url_example: http://arabidopsis.org/servlets/TairObject?type=locus&name=At2g17950
entity_type: SO:0000704 ! gene
abbreviation: AGRICOLA_ID
database: AGRICultural OnLine Access
generic_url: http://agricola.nal.usda.gov/
example_id: AGRICOLA_NAL:TP248.2 P76 v.14
entity_type: BET:0000000 ! entity
abbreviation: AGRICOLA_IND
database: AGRICultural OnLine Access
generic_url: http://agricola.nal.usda.gov/
example_id: AGRICOLA_IND:IND23252955
entity_type: BET:0000000 ! entity
abbreviation: Alzheimers_University_of_Toronto
database: Alzheimers Project at University of Toronto
generic_url: http://www.ims.utoronto.ca/
entity_type: BET:0000000 ! entity
abbreviation: ApiDB_PlasmoDB
database: PlasmoDB Plasmodium Genome Resource
generic_url: http://plasmodb.org/
url_syntax: http://www.plasmodb.org/gene/[example_id]
example_id: ApiDB_PlasmoDB:PF11_0344
url_example: http://www.plasmodb.org/gene/PF11_0344
entity_type: BET:0000000 ! entity
abbreviation: APSNET
database: APSNET Common Names of Plant Diseases
generic_url: http://www.mobot.org/mobot/research/apweb/
url_syntax: http://www.apsnet.org/publications/commonnames/Pages/[example_id].aspx
example_id: APSNET:AfricanDaisy
url_example: http://www.apsnet.org/publications/commonnames/Pages/AfricanDaisy.aspx
entity_type: BET:0000000 ! entity
abbreviation: APweb
database: Angiosperm Phylogeny Website
generic_url: http://www.mobot.org/mobot/research/apweb/
url_syntax: http://www.mobot.org/mobot/research/apweb/top/glossarya_h.html
example_id: APweb:Glossary
url_example: http://www.mobot.org/mobot/research/apweb/top/glossarya_h.html
entity_type: BET:0000000 ! entity
abbreviation: AraCyc
database: AraCyc metabolic pathway database for Arabidopsis thaliana
generic_url: http://www.arabidopsis.org/biocyc/index.jsp
url_syntax: http://www.arabidopsis.org:1555/ARA/NEW-IMAGE?type=NIL&object=[example_id]
example_id: AraCyc:PWYQT-62
url_example: http://www.arabidopsis.org:1555/ARA/NEW-IMAGE?type=NIL&object=PWYQT-62
entity_type: BET:0000000 ! entity
abbreviation: ARUK-UCL
database: Alzheimers Research Gene Ontology Initiative
generic_url: http://www.ucl.ac.uk/functional-gene-annotation/neurological
entity_type: BET:0000000 ! entity
abbreviation: ASAP
database: A Systematic Annotation Package for Community Analysis of Genomes
generic_url: https://asap.ahabs.wisc.edu/annotation/php/ASAP1.htm
url_syntax: https://asap.ahabs.wisc.edu/annotation/php/feature_info.php?FeatureID=[example_id]
example_id: ASAP:ABE-0000008
url_example: https://asap.ahabs.wisc.edu/annotation/php/feature_info.php?FeatureID=ABE-0000008
entity_type: SO:0000704 ! gene
abbreviation: AspGD
database: Aspergillus Genome Database
synonym: ASPGD
synonym: AspGDID
generic_url: http://www.aspergillusgenome.org/
local_id_syntax: ASPL[0-9]{10}
url_syntax: http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=[example_id]
example_id: AspGD:ASPL0000067538
url_example: http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=ASPL0000067538
entity_type: SO:0000704 ! gene
abbreviation: AspGD_LOCUS
database: Aspergillus Genome Database
generic_url: http://www.aspergillusgenome.org/
url_syntax: http://www.aspergillusgenome.org/cgi-bin/locus.pl?locus=[example_id]
example_id: AspGD_LOCUS:AN10942
url_example: http://www.aspergillusgenome.org/cgi-bin/locus.pl?locus=AN10942
entity_type: BET:0000000 ! entity
abbreviation: AspGD_REF
database: Aspergillus Genome Database
generic_url: http://www.aspergillusgenome.org/
url_syntax: http://www.aspergillusgenome.org/cgi-bin/reference/reference.pl?dbid=[example_id]
example_id: AspGD_REF:90
url_example: http://www.aspergillusgenome.org/cgi-bin/reference/reference.pl?dbid=90
entity_type: BET:0000000 ! entity
abbreviation: BFO
database: Basic Formal Ontology
description: An upper ontology used by Open Bio Ontologies (OBO) Foundry. BFO contains upper-level classes as well as core relations such as part_of (BFO_0000050)
generic_url: http://purl.obolibrary.org/obo/bfo
url_syntax: http://purl.obolibrary.org/obo/BFO_[example_id]
example_id: BFO:0000066
url_example: http://purl.obolibrary.org/obo/BFO_0000066
entity_type: BET:0000000 ! entity
abbreviation: BHF-UCL
database: Cardiovascular Gene Ontology Annotation Initiative
description: The Cardiovascular Gene Ontology Annotation Initiative is supported by the British Heart Foundation (BHF) and located at University College London (UCL).
generic_url: http://www.ucl.ac.uk/cardiovasculargeneontology/
entity_type: BET:0000000 ! entity
abbreviation: BioCyc
database: BioCyc collection of metabolic pathway databases
generic_url: http://biocyc.org/
url_syntax: http://biocyc.org/META/NEW-IMAGE?type=PATHWAY&object=[example_id]
example_id: BioCyc:PWY-5271
url_example: http://biocyc.org/META/NEW-IMAGE?type=PATHWAY&object=PWY-5271
entity_type: BET:0000000 ! entity
abbreviation: BIOMD
database: BioModels Database
synonym: BIOMDID
generic_url: http://www.ebi.ac.uk/biomodels/
url_syntax: http://www.ebi.ac.uk/compneur-srv/biomodels-main/publ-model.do?mid=[example_id]
example_id: BIOMD:BIOMD0000000045
url_example: http://www.ebi.ac.uk/compneur-srv/biomodels-main/publ-model.do?mid=BIOMD0000000045
entity_type: BET:0000000 ! entity
abbreviation: bioPIXIE_MEFIT
database: biological Process Inference from eXperimental Interaction Evidence/Microarray Experiment Functional Integration Technology
generic_url: http://avis.princeton.edu/mefit/
generic_url: http://pixie.princeton.edu/pixie/
entity_type: BET:0000000 ! entity
abbreviation: BIOSIS
database: BIOSIS previews
generic_url: http://www.biosis.org/
example_id: BIOSIS:200200247281
entity_type: BET:0000000 ! entity
abbreviation: BRENDA
database: BRENDA, The Comprehensive Enzyme Information System
generic_url: http://www.brenda-enzymes.info
url_syntax: http://www.brenda-enzymes.info/php/result_flat.php4?ecno=[example_id]
example_id: BRENDA:4.2.1.3
url_example: http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.3
entity_type: GO:0003824 ! catalytic activity
abbreviation: BTO
database: BRENDA tissue / enzyme ontology
description: A structured controlled vocabulary for the source of an enzyme comprising tissues, cell lines, cell types and cell cultures.
generic_url: http://purl.obolibrary.org/obo/bto
url_syntax: http://purl.obolibrary.org/obo/BTO_[example_id]
example_id: BTO_0002164
url_example: http://purl.obolibrary.org/obo/BTO_0002164
entity_type: BET:0000000 ! entity
abbreviation: Broad
database: Broad Institute
generic_url: http://www.broad.mit.edu/
entity_type: BET:0000000 ! entity
abbreviation: Broad_MGG
database: Magnaporthe grisea Database
description: Magnaporthe grisea Database at the Broad Institute
generic_url: http://www.broad.mit.edu/annotation/genome/magnaporthe_grisea/Home.html
url_syntax: http://www.broad.mit.edu/annotation/genome/magnaporthe_grisea/GeneLocus.html?sp=S[example_id]
example_id: Broad_MGG:MGG_05132.5
url_example: http://www.broad.mit.edu/annotation/genome/magnaporthe_grisea/GeneLocus.html?sp=SMGG_05132
entity_type: BET:0000000 ! entity
abbreviation: Broad_NEUROSPORA
database: Neurospora crassa Database
description: Neurospora crassa database at the Broad Institute
generic_url: http://www.broadinstitute.org/annotation/genome/neurospora/MultiHome.html
url_syntax: http://www.broadinstitute.org/annotation/genome/neurospora/GeneDetails.html?sp=S[example_id]
example_id: BROAD_NEUROSPORA:7000007580576824
url_example: http://www.broadinstitute.org/annotation/genome/neurospora/GeneDetails.html?sp=S7000007580576824
entity_type: BET:0000000 ! entity
abbreviation: CACAO
database: Community Assessment of Community Annotation with Ontologies
description: The Community Assessment of Community Annotation with Ontologies (CACAO) is a project to do large-scale manual community annotation of gene function using the Gene Ontology as a multi-institution student competition.
generic_url: http://gowiki.tamu.edu/wiki/index.php/Category:CACAO
url_syntax: http://gowiki.tamu.edu/wiki/index.php/[example_id]
example_id: MYCS2:A0QNF5
url_example: http://gowiki.tamu.edu/wiki/index.php/MYCS2:A0QNF5
entity_type: BET:0000000 ! entity
abbreviation: CAFA
database: Critical Assessment of Protein Function Annotation
generic_url: http://biofunctionprediction.org/cafa/
entity_type: BET:0000000 ! entity
abbreviation: CAS
database: CAS Chemical Registry
description: CAS REGISTRY is the most authoritative collection of disclosed chemical substance information, containing more than 54 million organic and inorganic substances and 62 million sequences. CAS REGISTRY covers substances identified from the scientific literature from 1957 to the present, with additional substances going back to the early 1900s.
generic_url: http://www.cas.org/expertise/cascontent/registry/index.html
example_id: CAS:58-08-2
entity_type: BET:0000000 ! entity
abbreviation: CASGEN
database: Catalog of Fishes genus database
synonym: CAS_GEN
generic_url: http://research.calacademy.org/research/ichthyology/catalog/fishcatsearch.html
url_syntax: http://research.calacademy.org/research/ichthyology/catalog/getname.asp?rank=Genus&id=[example_id]
example_id: CASGEN:1040
url_example: http://research.calacademy.org/research/ichthyology/catalog/getname.asp?rank=Genus&id=1040
entity_type: BET:0000000 ! entity
abbreviation: CASREF
database: Catalog of Fishes publications database
generic_url: http://research.calacademy.org/research/ichthyology/catalog/fishcatsearch.html
url_syntax: http://research.calacademy.org/research/ichthyology/catalog/getref.asp?id=[example_id]
example_id: CASREF:2031
url_example: http://research.calacademy.org/research/ichthyology/catalog/getref.asp?id=2031
entity_type: BET:0000000 ! entity
abbreviation: CASSPC
database: Catalog of Fishes species database
synonym: CAS_SPC
generic_url: http://research.calacademy.org/research/ichthyology/catalog/fishcatsearch.html
url_syntax: http://research.calacademy.org/research/ichthyology/catalog/getname.asp?rank=Species&id=[example_id]
url_example: http://research.calacademy.org/research/ichthyology/catalog/getname.asp?rank=Species&id=1979
entity_type: BET:0000000 ! entity
abbreviation: CAZY
database: Carbohydrate Active EnZYmes
description: The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds.
generic_url: http://www.cazy.org/
local_id_syntax: (CE|GH|GT|PL)\d+
url_syntax: http://www.cazy.org/[example_id].html
example_id: CAZY:PL11
url_example: http://www.cazy.org/PL11.html
entity_type: BET:0000000 ! entity
abbreviation: CBS
database: Center for Biological Sequence Analysis
generic_url: http://www.cbs.dtu.dk/
example_id: CBS:TMHMM
url_example: http://www.cbs.dtu.dk/services/[example_id]/
entity_type: BET:0000000 ! entity
abbreviation: CDD
database: Conserved Domain Database at NCBI
generic_url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=cdd
url_syntax: http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=[example_id]
example_id: CDD:34222
url_example: http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=34222
entity_type: BET:0000000 ! entity
abbreviation: CGD
database: Candida Genome Database
synonym: CGDID
generic_url: http://www.candidagenome.org/
local_id_syntax: (CAL|CAF)[0-9]{10}
url_syntax: http://www.candidagenome.org/cgi-bin/locus.pl?dbid=[example_id]
example_id: CGD:CAL0000179664
url_example: http://www.candidagenome.org/cgi-bin/locus.pl?dbid=CAL0000179664
entity_type: SO:0000704 ! gene
abbreviation: CGD_LOCUS
database: Candida Genome Database
generic_url: http://www.candidagenome.org/
url_syntax: http://www.candidagenome.org/cgi-bin/locus.pl?locus=[example_id]
example_id: CGD_LOCUS:HWP1
url_example: http://www.candidagenome.org/cgi-bin/locus.pl?locus=HWP1
entity_type: BET:0000000 ! entity
abbreviation: CGD_REF
database: Candida Genome Database
generic_url: http://www.candidagenome.org/
url_syntax: http://www.candidagenome.org/cgi-bin/reference/reference.pl?dbid=[example_id]
example_id: CGD_REF:1490
url_example: http://www.candidagenome.org/cgi-bin/reference/reference.pl?dbid=1490
entity_type: BET:0000000 ! entity
abbreviation: CGEN
database: Compugen Gene Ontology Gene Association Data
generic_url: http://www.cgen.com/
example_id: CGEN:PrID131022
entity_type: BET:0000000 ! entity
abbreviation: CGSC
database: CGSC
generic_url: http://cgsc.biology.yale.edu/
example_id: CGSC:rbsK
url_example: http://cgsc.biology.yale.edu/Site.php?ID=315
entity_type: BET:0000000 ! entity
abbreviation: CHEBI
database: Chemical Entities of Biological Interest
synonym: ChEBI
generic_url: http://www.ebi.ac.uk/chebi/
local_id_syntax: [0-9]{1,6}
url_syntax: http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:[example_id]
example_id: CHEBI:17234
url_example: http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17234
entity_type: CHEBI:24431 ! chemical entity
abbreviation: CL
database: Cell Type Ontology
generic_url: http://cellontology.org
local_id_syntax: [0-9]{7}
url_syntax: http://purl.obolibrary.org/obo/CL_[example_id]
example_id: CL:0000041
url_example: http://purl.obolibrary.org/obo/CL_0000041
entity_type: GO:0005623 ! cell
abbreviation: CO_125
database: Crop Ontology CGIAR Musa Anatomy
generic_url: http://www.cropontology.org/ontology/CO_125:0000000/CGIAR_Musa_anatomy
example_id: CO_125:0000002
url_example: http://www.cropontology.org/ontology/CO_125:0000000
entity_type: BET:0000000 ! entity
abbreviation: COG
database: NCBI Clusters of Orthologous Groups
generic_url: http://www.ncbi.nlm.nih.gov/COG/
entity_type: BET:0000000 ! entity
abbreviation: COG_Cluster
database: NCBI COG cluster
generic_url: http://www.ncbi.nlm.nih.gov/COG/
url_syntax: http://www.ncbi.nlm.nih.gov/COG/new/release/cow.cgi?cog=[example_id]
example_id: COG_Cluster:COG0001
url_example: http://www.ncbi.nlm.nih.gov/COG/new/release/cow.cgi?cog=COG0001
entity_type: BET:0000000 ! entity
abbreviation: COG_Function
database: NCBI COG function
generic_url: http://www.ncbi.nlm.nih.gov/COG/
url_syntax: http://www.ncbi.nlm.nih.gov/COG/grace/shokog.cgi?fun=[example_id]
example_id: COG_Function:H
url_example: http://www.ncbi.nlm.nih.gov/COG/grace/shokog.cgi?fun=H
entity_type: BET:0000000 ! entity
abbreviation: COG_Pathway
database: NCBI COG pathway
generic_url: http://www.ncbi.nlm.nih.gov/COG/
url_syntax: http://www.ncbi.nlm.nih.gov/COG/new/release/coglist.cgi?pathw=[example_id]
example_id: COG_Pathway:14
url_example: http://www.ncbi.nlm.nih.gov/COG/new/release/coglist.cgi?pathw=14
entity_type: BET:0000000 ! entity
abbreviation: CollecTF
database: Database of transcription factor binding sites (TFBS) in the Bacteria domain
generic_url: http://www.collectf.org/
entity_type: BET:0000000 ! entity
abbreviation: ComplexPortal
database: Complex Portal database of macromolecular complexes
generic_url: https://www.ebi.ac.uk/complexportal
local_id_syntax: CPX-[0-9]+
url_syntax: https://www.ebi.ac.uk/complexportal/complex/[example_id]
example_id: ComplexPortal:CPX-2158
url_example: https://www.ebi.ac.uk/complexportal/complex/CPX-2158
entity_type: GO:0032991 ! macromolecular complex
abbreviation: CORIELL
database: Coriell Institute for Medical Research
description: The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world.
generic_url: http://ccr.coriell.org/
url_syntax: http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=[example_id]
example_id: GM07892
url_example: http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07892
entity_type: BET:0000000 ! entity
abbreviation: CORUM
database: CORUM - the Comprehensive Resource of Mammalian protein complexes
generic_url: http://mips.gsf.de/genre/proj/corum/
url_syntax: http://mips.gsf.de/genre/proj/corum/complexdetails.html?id=[example_id]
example_id: CORUM:837
url_example: http://mips.gsf.de/genre/proj/corum/complexdetails.html?id=837
entity_type: BET:0000000 ! entity
abbreviation: cosmoss_PpV1.2
database: plantco.de|cosmoss.org
generic_url: https://www.cosmoss.org/annotation/genonaut
url_syntax: https://www.cosmoss.org/annotation/genonaut?accession=[example_id]&version=V1.2
example_id: cosmoss_PpV1.2:Pp1s47_77V2.1
url_example: https://www.cosmoss.org/annotation/genonaut?accession=Pp1s53_22V2.1&version=V1.2
entity_type: BET:0000000 ! entity
abbreviation: cribi_vitis
database: Vitis CRIBI database
generic_url: http://genomes.cribi.unipd.it
url_syntax: http://genomes.cribi.unipd.it/cgi-bin/pqs2/report.pl?gene_name=[example_id]&release=v1
example_id: VIT_00s0173g00270
url_example: http://genomes.cribi.unipd.it/cgi-bin/pqs2/report.pl?gene_name=VIT_00s0173g00270&release=v1
entity_type: BET:0000000 ! entity
abbreviation: dbSNP
database: NCBI dbSNP
generic_url: http://www.ncbi.nlm.nih.gov/projects/SNP
local_id_syntax: \d+
url_syntax: http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=[example_id]
example_id: dbSNP:rs3131969
url_example: http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=rs3131969
entity_type: BET:0000000 ! entity
abbreviation: DDANAT
database: Dictyostelium discoideum anatomy
generic_url: http://dictybase.org/Dicty_Info/dicty_anatomy_ontology.html
local_id_syntax: [0-9]{7}
example_id: DDANAT:0000068
entity_type: CARO:0000000 ! anatomical entity
abbreviation: DDBJ
database: DNA Databank of Japan
generic_url: http://www.ddbj.nig.ac.jp/
url_syntax: http://arsa.ddbj.nig.ac.jp/arsa/ddbjSplSearch?KeyWord=[example_id]
example_id: DDBJ:AA816246
url_example: http://arsa.ddbj.nig.ac.jp/arsa/ddbjSplSearch?KeyWord=AA816246
entity_type: BET:0000000 ! entity
abbreviation: DFLAT
database: Developmental FunctionaL Annotation at Tufts
generic_url: http://bcb.cs.tufts.edu/dflat/
entity_type: BET:0000000 ! entity
abbreviation: dictyBase
database: dictyBase
synonym: DDB
synonym: DictyBase
generic_url: http://dictybase.org
local_id_syntax: DDB_G[0-9]{7}
url_syntax: http://dictybase.org/gene/[example_id]
example_id: dictyBase:DDB_G0277859
url_example: http://dictybase.org/gene/DDB_G0277859
entity_type: SO:0000704 ! gene
abbreviation: dictyBase_gene_name
database: dictyBase
generic_url: http://dictybase.org
url_syntax: http://dictybase.org/gene/[example_id]
example_id: dictyBase_gene_name:mlcE
url_example: http://dictybase.org/gene/mlcE
entity_type: BET:0000000 ! entity
abbreviation: dictyBase_REF
database: dictyBase literature references
synonym: DDB_REF
generic_url: http://dictybase.org
url_syntax: http://dictybase.org/db/cgi-bin/dictyBase/reference/reference.pl?refNo=[example_id]
example_id: dictyBase_REF:10157
url_example: http://dictybase.org/db/cgi-bin/dictyBase/reference/reference.pl?refNo=10157
entity_type: BET:0000000 ! entity
abbreviation: DOI
database: Digital Object Identifier
generic_url: http://dx.doi.org/
local_id_syntax: 10\.[0-9]+\/.*
url_syntax: http://dx.doi.org/[example_id]
example_id: DOI:10.1016/S0963-9969(99)00021-6
url_example: http://dx.doi.org/10.1016/S0963-9969(99)00021-6
entity_type: BET:0000000 ! entity
abbreviation: EC
database: Enzyme Commission
generic_url: http://enzyme.expasy.org/
generic_url: http://www.chem.qmul.ac.uk/iubmb/enzyme/
url_syntax: http://www.expasy.org/enzyme/[example_id]
example_id: EC:1.4.3.6
url_example: http://www.expasy.org/enzyme/1.4.3.6
entity_type: GO:0003824 ! catalytic activity
abbreviation: EchoBASE
database: EchoBASE post-genomic database for Escherichia coli
generic_url: http://www.ecoli-york.org/
local_id_syntax: EB[0-9]{4}
url_syntax: http://www.biolws1.york.ac.uk/echobase/Gene.cfm?recordID=[example_id]
example_id: EchoBASE:EB0231
url_example: http://www.biolws1.york.ac.uk/echobase/Gene.cfm?recordID=EB0231
entity_type: SO:0000704 ! gene
abbreviation: ECK
database: EcoGene Database of Escherichia coli Sequence and Function
generic_url: http://www.ecogene.org/
local_id_syntax: ECK[0-9]{4}
url_syntax: http://www.ecogene.org/geneInfo.php?eck_id=[example_id]
example_id: ECK:ECK3746
url_example: http://www.ecogene.org/geneInfo.php?eck_id=ECK3746
entity_type: SO:0000704 ! gene
abbreviation: ECO
database: Evidence Code ontology
generic_url: http://www.geneontology.org/
local_id_syntax: \d{7}
example_id: ECO:0000002
entity_type: BET:0000000 ! entity
abbreviation: EcoCyc
database: Encyclopedia of E. coli metabolism
generic_url: http://ecocyc.org/
local_id_syntax: EG[0-9]{5}
url_syntax: http://biocyc.org/ECOLI/NEW-IMAGE?type=PATHWAY&object=[example_id]
example_id: EcoCyc:P2-PWY
url_example: http://biocyc.org/ECOLI/NEW-IMAGE?type=PATHWAY&object=P2-PWY
entity_type: GO:0008150 ! biological_process
abbreviation: EcoCyc_REF
database: Encyclopedia of E. coli metabolism
synonym: ECOCYC_REF
generic_url: http://ecocyc.org/
url_syntax: http://biocyc.org/ECOLI/reference.html?type=CITATION-FRAME&object=[example_id]
example_id: EcoCyc_REF:COLISALII
url_example: http://biocyc.org/ECOLI/reference.html?type=CITATION-FRAME&object=COLISALII
entity_type: BET:0000000 ! entity
abbreviation: ECOGENE
database: EcoGene Database of Escherichia coli Sequence and Function
synonym: EcoGene
generic_url: http://www.ecogene.org/
local_id_syntax: EG[0-9]{5}
url_syntax: http://www.ecogene.org/geneInfo.php?eg_id=[example_id]
example_id: ECOGENE:EG10818
url_example: http://www.ecogene.org/geneInfo.php?eg_id=EG10818
entity_type: SO:0000704 ! gene
abbreviation: ECOGENE_G
database: EcoGene Database of Escherichia coli Sequence and Function
generic_url: http://www.ecogene.org/
example_id: ECOGENE_G:deoC
entity_type: BET:0000000 ! entity
abbreviation: EcoliWiki
database: EcoliWiki from EcoliHub
description: EcoliHub\'s subsystem for community annotation of E. coli K-12
generic_url: http://ecoliwiki.net/
local_id_syntax: [A-Za-z]{3,4}
entity_type: SO:0000704 ! gene
abbreviation: EMAPA
database: Mouse gross anatomy and development, abstract
description: A time-independent Mouse Anatomical Dictionary; part of Gene Expression Database
generic_url: http://emouseatlas.org/
local_id_syntax: [0-9]{5}
url_syntax: http://www.informatics.jax.org/vocab/gxd/anatomy/EMAPA:[example_id]
example_id: EMAPA:16032
url_example: http://www.informatics.jax.org/vocab/gxd/anatomy/EMAPA:16894
entity_type: CARO:0000000 ! anatomical entity
abbreviation: EMBL
database: EMBL Nucleotide Sequence Database
description: International nucleotide sequence database collaboration, comprising EMBL-EBI nucleotide sequence data library (EMBL-Bank), DNA DataBank of Japan (DDBJ), and NCBI GenBank
generic_url: http://www.ebi.ac.uk/embl/
local_id_syntax: ([A-Z]{1}[0-9]{5})|([A-Z]{2}[0-9]{6})|([A-Z]{4}[0-9]{8,9})
url_syntax: http://www.ebi.ac.uk/cgi-bin/emblfetch?style=html&Submit=Go&id=[example_id]
example_id: EMBL:AA816246
url_example: http://www.ebi.ac.uk/cgi-bin/emblfetch?style=html&Submit=Go&id=AA816246
entity_type: SO:0000704 ! gene
abbreviation: ENA
database: European Nucleotide Archive
description: ENA is made up of a number of distinct databases that includes EMBL-Bank, the newly established Sequence Read Archive (SRA) and the Trace Archive. International nucleotide sequence database collaboration, comprising ENA-EBI nucleotide sequence data library (EMBL-Bank), DNA DataBank of Japan (DDBJ), and NCBI GenBank
generic_url: http://www.ebi.ac.uk/ena/
local_id_syntax: ([A-Z]{1}[0-9]{5})|([A-Z]{2}[0-9]{6})|([A-Z]{4}[0-9]{8,9})
url_syntax: http://www.ebi.ac.uk/ena/data/view/[example_id]
example_id: ENA:AA816246
url_example: http://www.ebi.ac.uk/ena/data/view/AA816246
entity_type: BET:0000000 ! entity
abbreviation: ENSEMBL
database: Ensembl database of automatically annotated genomic data
synonym: Ensembl
synonym: ensembl
generic_url: http://www.ensembl.org/
local_id_syntax: ENS[A-Z0-9]{10,17}
url_syntax: http://www.ensembl.org/id/[example_id]
example_id: ENSEMBL:ENSP00000265949
url_example: http://www.ensembl.org/id/ENSP00000265949
entity_type: SO:0000704 ! gene
local_id_syntax: ENS[A-Z0-9]{10,17}
url_syntax: http://www.ensembl.org/id/[example_id]
example_id: ENSEMBL:ENSP00000265949
url_example: http://www.ensembl.org/id/ENSP00000265949
entity_type: PR:000000001 ! protein
local_id_syntax: ENS[A-Z0-9]{10,17}
url_syntax: http://www.ensembl.org/id/[example_id]
example_id: ENSEMBL:ENSP00000265949
url_example: http://www.ensembl.org/id/ENSP00000265949
entity_type: SO:0000673 ! transcript
abbreviation: ENSEMBL_GeneID
database: Ensembl database of automatically annotated genomic data
generic_url: http://www.ensembl.org/
local_id_syntax: ENSG[0-9]{9,16}
url_syntax: http://www.ensembl.org/id/[example_id]
example_id: ENSEMBL_GeneID:ENSG00000126016
url_example: http://www.ensembl.org/id/ENSG00000126016
entity_type: SO:0000704 ! gene
abbreviation: ENSEMBL_ProteinID
database: Ensembl database of automatically annotated genomic data
generic_url: http://www.ensembl.org/
local_id_syntax: ENSP[0-9]{9,16}
url_syntax: http://www.ensembl.org/id/[example_id]
example_id: ENSEMBL_ProteinID:ENSP00000361027
url_example: http://www.ensembl.org/id/ENSP00000361027
entity_type: PR:000000001 ! protein
abbreviation: ENSEMBL_TranscriptID
database: Ensembl database of automatically annotated genomic data
generic_url: http://www.ensembl.org/
local_id_syntax: ENST[0-9]{9,16}
url_syntax: http://www.ensembl.org/id/[example_id]
example_id: ENSEMBL_TranscriptID:ENST00000371959
url_example: http://www.ensembl.org/id/ENST00000371959
entity_type: SO:0000673 ! transcript
abbreviation: EnsemblFungi
database: Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi.
generic_url: http://fungi.ensembl.org/
url_syntax: http://www.ensemblgenomes.org/id/[example_id]
example_id: EnsemblFungi:YOR197W
url_example: http://www.ensemblgenomes.org/id/YOR197W
entity_type: SO:0000704 ! gene
abbreviation: EnsemblMetazoa
database: Ensembl Metazoa, the Ensembl database for accessing genome-scale data from non-vertebrate metazoa.
generic_url: http://metazoa.ensembl.org/
url_syntax: http://www.ensemblgenomes.org/id/[example_id]
example_id: EnsemblMetazoa:FBgn0052693
url_example: http://www.ensemblgenomes.org/id/FBgn0052693
entity_type: SO:0000704 ! gene
abbreviation: EnsemblPlants
database: Ensembl Plants, the Ensembl database for accessing genome-scale data from plants.
synonym: EnsemblPlants/Gramene
generic_url: http://plants.ensembl.org/
url_syntax: http://www.ensemblgenomes.org/id/[example_id]
example_id: EnsemblPlants:LOC_Os01g22954
url_example: http://www.ensemblgenomes.org/id/LOC_Os01g22954
entity_type: SO:0000704 ! gene
abbreviation: EnsemblProtists
database: Ensembl Protists, the Ensembl database for accessing genome-scale data from protists.
generic_url: http://protists.ensembl.org/
url_syntax: http://www.ensemblgenomes.org/id/[example_id]
example_id: EnsemblProtists:PFL2550w
url_example: http://www.ensemblgenomes.org/id/PFL2550w
entity_type: SO:0000704 ! gene
abbreviation: ENZYME
database: Swiss Institute of Bioinformatics enzyme database
generic_url: http://www.expasy.ch/
url_syntax: http://www.expasy.ch/cgi-bin/nicezyme.pl?[example_id]
example_id: ENZYME:EC 1.1.1.1
url_example: http://www.expasy.ch/cgi-bin/nicezyme.pl?1.1.1.1
entity_type: BET:0000000 ! entity
abbreviation: EO_GIT
database: GitHub Issue Tracker for EO
generic_url: https://github.com/Planteome/plant-environment-ontology
url_syntax: https://github.com/Planteome/plant-environment-ontology/issues/[example_id]
example_id: EO_GIT:76
url_example: https://github.com/Planteome/plant-environment-ontology/issues/76
entity_type: BET:0000000 ! entity
abbreviation: EuPathDB
database: The Eukaryotic Pathogen Database
generic_url: http://eupathdb.org
url_syntax: http://eupathdb.org/gene/[example_id]
example_id: EuPathDB:LtaP17.1490
url_example: http://eupathdb.org/gene/LtaP17.1490
entity_type: BET:0000000 ! gene
abbreviation: Eurofung
database: Eurofungbase community annotation
generic_url: http://www.eurofung.net/option=com_content&task=section&id=3&Itemid=4
entity_type: BET:0000000 ! entity
abbreviation: FB
database: FlyBase
synonym: FlyBase
synonym: FLYBASE
generic_url: http://flybase.org/
local_id_syntax: FBgn[0-9]{7}
url_syntax: http://flybase.org/reports/[example_id].html
example_id: FB:FBgn0000024
url_example: http://flybase.org/reports/FBgn0000024.html
entity_type: SO:0000704 ! gene
abbreviation: FBbt
database: Drosophila gross anatomy
generic_url: http://flybase.org/
url_syntax: http://flybase.org/cgi-bin/fbcvq.html?query=FBbt:[example_id]
example_id: FBbt:00005177
url_example: http://flybase.org/cgi-bin/fbcvq.html?query=FBbt:00005177
entity_type: BET:0000000 ! entity
abbreviation: FMA
database: Foundational Model of Anatomy
generic_url: http://sig.biostr.washington.edu/projects/fm/index.html
example_id: FMA:61905
entity_type: BET:0000000 ! entity
abbreviation: FYPO
database: Fission Yeast Phenotype Ontology
generic_url: http://www.pombase.org/
local_id_syntax: \d{7}
example_id: FYPO:0000001
entity_type: BET:0000000 ! entity
abbreviation: GDB
database: Human Genome Database
generic_url: http://www.gdb.org/
url_syntax: http://www.gdb.org/gdb-bin/genera/accno?accessionNum=GDB:[example_id]
example_id: GDB:306600
url_example: http://www.gdb.org/gdb-bin/genera/accno?accessionNum=GDB:306600
entity_type: BET:0000000 ! entity
abbreviation: GenBank
database: GenBank
description: The NIH genetic sequence database, an annotated collection of all publicly available DNA sequences.
synonym: GB
generic_url: http://www.ncbi.nlm.nih.gov/Genbank/
local_id_syntax: ([A-Z]{2}[0-9]{6})|([A-Z]{1}[0-9]{5})
url_syntax: http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=[example_id]
example_id: GB:AA816246
url_example: http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=AA816246
entity_type: SO:0000704 ! gene
local_id_syntax: ([A-Z]{2}[0-9]{6})|([A-Z]{1}[0-9]{5})
url_syntax: http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=[example_id]
example_id: GB:AA816246
url_example: http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=AA816246
entity_type: PR:000000001 ! protein
abbreviation: Gene3D
database: Domain Architecture Classification
generic_url: http://gene3d.biochem.ucl.ac.uk/Gene3D/
url_syntax: http://gene3d.biochem.ucl.ac.uk/search?mode=family&sterm=[example_id]
example_id: Gene3D:3.30.390.30
url_example: http://gene3d.biochem.ucl.ac.uk/search?mode=family&sterm=3.30.390.30
entity_type: BET:0000000 ! entity
abbreviation: GeneDB
database: GeneDB
generic_url: http://www.genedb.org/gene/
local_id_syntax: ((LmjF|LinJ|LmxM)\.[0-9]{2}\.[0-9]{4})|(PF3D7_[0-9]{7})|(Tb[0-9]+\.[A-Za-z0-9]+\.[0-9]+)|(TcCLB\.[0-9]{6}\.[0-9]+)
url_syntax: http://www.genedb.org/gene/[example_id]
example_id: PF3D7_1467300
url_example: http://www.genedb.org/gene/PF3D7_1467300
entity_type: SO:0000704 ! gene
abbreviation: Genesys-pgr
database: Gene DB, Genesys
generic_url: https://www.genesys-pgr.org/
url_syntax: https://www.genesys-pgr.org/acn/search?q=[example_id]
example_id: Genesys-pgr:CM1015-16
url_example: https://www.genesys-pgr.org/acn/search?q=CM1015-16
entity_type: BET:0000000 ! entity
abbreviation: GenProtEC
database: GenProtEC E. coli genome and proteome database
generic_url: http://genprotec.mbl.edu/
entity_type: BET:0000000 ! entity
abbreviation: GEO
database: NCBI Gene Expression Omnibus
generic_url: http://www.ncbi.nlm.nih.gov/geo/
url_syntax: http://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=[example_id]
example_id: GEO:GDS2223
url_example: http://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=GDS2223
entity_type: BET:0000000 ! entity
abbreviation: GermOnline
database: GermOnline
generic_url: http://www.germonline.org/
entity_type: BET:0000000 ! entity
abbreviation: GO
database: Gene Ontology Database
generic_url: http://amigo.geneontology.org/
local_id_syntax: \d{7}
url_syntax: http://amigo.geneontology.org/amigo/term/GO:[example_id]
example_id: GO:0004352
url_example: http://amigo.geneontology.org/amigo/term/GO:0004352
entity_type: GO:0003674 ! molecular_function
local_id_syntax: \d{7}
url_syntax: http://amigo.geneontology.org/amigo/term/GO:[example_id]
example_id: GO:0004352
url_example: http://amigo.geneontology.org/amigo/term/GO:0004352
entity_type: GO:0008150 ! biological_process
local_id_syntax: \d{7}
url_syntax: http://amigo.geneontology.org/amigo/term/GO:[example_id]
example_id: GO:0004352
url_example: http://amigo.geneontology.org/amigo/term/GO:0004352
entity_type: GO:0005575 ! cellular_component
local_id_syntax: \d{7}
url_syntax: http://amigo.geneontology.org/amigo/term/GO:[example_id]
example_id: GO:0004352
url_example: http://amigo.geneontology.org/amigo/term/GO:0004352
entity_type: GO:0032991 ! macromolecular complex
abbreviation: GO_Central
database: GO Central
description: Manual annotation from PAINT curators into the UniProt Protein2GO curation tool.
synonym: GO_CENTRAL
generic_url: http://www.geneontology.org/GO.refgenome.shtml
entity_type: BET:0000000 ! entity
abbreviation: GO_Noctua
database: GO Noctua
description: Manual annotation derived from LEGO annotations
generic_url: https://github.com/geneontology/noctua-models
entity_type: BET:0000000 ! entity
abbreviation: GO_REF
database: Gene Ontology Database references
generic_url: http://purl.obolibrary.org/obo/go/references/
local_id_syntax: \d{7}
url_syntax: http://purl.obolibrary.org/obo/go/references/[example_id]
example_id: 0000001
url_example: http://purl.obolibrary.org/obo/go/references/0000001
entity_type: BET:0000000 ! entity
abbreviation: gomodel
database: Gene Ontology Causal Activity Model Database
generic_url: http://www.geneontology.org/gocam
url_syntax: http://www.geneontology.org/gocam/[example_id]
example_id: gomodel:5ae3b0f600001522
url_example: http://www.geneontology.org/gocam/gomodel:5ae3b0f600001522
entity_type: BET:0000000 ! model
abbreviation: GOC
database: Gene Ontology Consortium
generic_url: http://www.geneontology.org/
entity_type: BET:0000000 ! entity
abbreviation: GOC-OWL
database: Gene Ontology Consortium - Logical inferences
generic_url: http://www.geneontology.org/
entity_type: BET:0000000 ! entity
abbreviation: GONUTS
database: Gene Ontology Normal Usage Tracking System (GONUTS)
description: Third party documentation for GO and community annotation system.
generic_url: http://gowiki.tamu.edu
url_syntax: http://gowiki.tamu.edu/wiki/index.php/[example_id]
example_id: GONUTS:MOUSE:CD28
url_example: http://gowiki.tamu.edu/wiki/index.php/MOUSE:CD28
entity_type: BET:0000000 ! entity
abbreviation: GOREL
database: GO Extensions to OBO Relation Ontology Ontology
description: Additional relations pending addition into RO
generic_url: http://purl.obolibrary.org/obo/ro
entity_type: BET:0000000 ! entity
abbreviation: GR
database: Gramene
generic_url: http://www.gramene.org/
local_id_syntax: [A-Z][0-9][A-Z0-9]{3}[0-9]
url_syntax: http://www.gramene.org/db/searches/browser?search_type=All&RGN=on&query=[example_id]
example_id: GR:sd1
url_example: http://www.gramene.org/db/searches/browser?search_type=All&RGN=on&query=sd1
entity_type: PR:000000001 ! protein
abbreviation: GR_GENE
database: Gramene
synonym: GR_gene
generic_url: http://www.gramene.org/
url_syntax: http://www.gramene.org/db/genes/search_gene?acc=[example_id]
example_id: GR_GENE:GR:0060198
url_example: http://www.gramene.org/db/genes/search_gene?acc=GR:0060198
entity_type: BET:0000000 ! entity
abbreviation: GR_MUT
database: A Comparative Mapping Resource for Grains
generic_url: http://www.gramene.org/
url_syntax: http://www.gramene.org/db/genes/search_gene?acc=[example_id]
example_id: GR_MUT:GR:0060198
url_example: http://www.gramene.org/db/genes/search_gene?acc=GR:0060198
entity_type: BET:0000000 ! entity
abbreviation: GR_PROTEIN
database: Gramene
synonym: GR_protein
generic_url: http://www.gramene.org/
local_id_syntax: [A-Z][0-9][A-Z0-9]{3}[0-9]
url_syntax: http://www.gramene.org/db/protein/protein_search?acc=[example_id]
example_id: GR_PROTEIN:Q6VSV0
url_example: http://www.gramene.org/db/protein/protein_search?acc=Q6VSV0
entity_type: PR:000000001 ! protein
abbreviation: GR_QTL
database: Gramene
generic_url: http://www.gramene.org/
url_syntax: http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=[example_id]
example_id: GR_QTL:CQU7
url_example: http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=CQU7
entity_type: BET:0000000 ! entity
abbreviation: GR_REF
database: Gramene
generic_url: http://www.gramene.org/
url_syntax: http://www.gramene.org/db/literature/pub_search?ref_id=[example_id]
example_id: GR_REF:659
url_example: http://www.gramene.org/db/literature/pub_search?ref_id=659
entity_type: BET:0000000 ! entity
abbreviation: GRIMS
database: IRRI Genetic Resources Information Management System
synonym: irri
generic_url: https://www.genesys-pgr.org
url_syntax: https://www.genesys-pgr.org/acn/search2?q=IRGC+[example_id]
example_id: GRIMS:90637
url_example: https://www.genesys-pgr.org/acn/search2?q=IRGC+90637
entity_type: BET:0000000 ! germplasm
abbreviation: GRIN
database: Germplasm Resources Information Network
synonym: grin
generic_url: http://www.ars-grin.gov/
url_syntax: https://npgsweb.ars-grin.gov/gringlobal/accessiondetail.aspx?id=[example_id]
example_id: GRIN:1882640
url_example: https://npgsweb.ars-grin.gov/gringlobal/accessiondetail.aspx?id=1882640
entity_type: BET:0000000 ! germplasm
abbreviation: GRINDesc
database: Germplasm Resources Information Network
generic_url: http://www.ars-grin.gov/
url_syntax: https://npgsweb.ars-grin.gov/gringlobal/descriptordetail.aspx?id=[example_id]
example_id: GRINdesc:89033
url_example: https://npgsweb.ars-grin.gov/gringlobal/descriptordetail.aspx?id=89033
entity_type: BET:0000000 ! germplasm descriptors
abbreviation: H-invDB
database: H-invitational Database
generic_url: http://www.h-invitational.jp/
entity_type: BET:0000000 ! entity
abbreviation: H-invDB_cDNA
database: H-invitational Database
generic_url: http://www.h-invitational.jp/
url_syntax: http://www.h-invitational.jp/hinv/spsoup/transcript_view?acc_id=[example_id]
example_id: H-invDB_cDNA:AK093148
url_example: http://www.h-invitational.jp/hinv/spsoup/transcript_view?acc_id=AK093149
entity_type: BET:0000000 ! entity
abbreviation: H-invDB_locus
database: H-invitational Database
generic_url: http://www.h-invitational.jp/
url_syntax: http://www.h-invitational.jp/hinv/spsoup/locus_view?hix_id=[example_id]
example_id: H-invDB_locus:HIX0014446
url_example: http://www.h-invitational.jp/hinv/spsoup/locus_view?hix_id=HIX0014446
entity_type: BET:0000000 ! entity
abbreviation: HAMAP
database: High-quality Automated and Manual Annotation of microbial Proteomes
generic_url: http://hamap.expasy.org/
url_syntax: http://hamap.expasy.org/unirule/[example_id]
example_id: HAMAP:MF_00031
url_example: http://hamap.expasy.org/unirule/MF_00131
entity_type: BET:0000000 ! entity
abbreviation: HGNC
database: HUGO Gene Nomenclature Committee
generic_url: http://www.genenames.org/
local_id_syntax: [0-9]+
url_syntax: http://www.genenames.org/data/hgnc_data.php?hgnc_id=HGNC:[example_id]
example_id: HGNC:29
url_example: http://www.genenames.org/data/hgnc_data.php?hgnc_id=HGNC:29
entity_type: SO:0000704 ! gene
abbreviation: HGNC_gene
database: HUGO Gene Nomenclature Committee
generic_url: http://www.genenames.org/
url_syntax: http://www.genenames.org/data/hgnc_data.php?app_sym=[example_id]
example_id: HGNC_gene:ABCA1
url_example: http://www.genenames.org/data/hgnc_data.php?app_sym=ABCA1
entity_type: BET:0000000 ! entity
abbreviation: HPA