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test maxbin2 2.2.7+galaxy2 #62

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jennaj opened this issue Oct 11, 2022 · 11 comments
Open

test maxbin2 2.2.7+galaxy2 #62

jennaj opened this issue Oct 11, 2022 · 11 comments

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@jennaj
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jennaj commented Oct 11, 2022

toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2/2.2.7+galaxy2

@jennaj
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jennaj commented Oct 11, 2022

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2/2.2.7+galaxy2

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@jennaj
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jennaj commented Jun 12, 2023

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2/2.2.7+galaxy2

@jennaj
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jennaj commented Jun 12, 2023

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2/2.2.7+galaxy2

@mvdbeek
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mvdbeek commented Jun 12, 2023

Results (powered by Planemo)

Summary

State Count
Total 4
Passed 2
Error 0
Failure 2
Skipped 0
Failed s
  • ❌ toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2 (Test test against test.galaxyproject.org #2)

    Problems:

    • Output log:  different than expected, difference (using diff):
      ( /tmp/tmpnmyc8elyout.log v. /tmp/tmpeninkxqhout.log )
      --- local_file
      +++ history_data
      @@ -1,13 +1,16 @@
       MaxBin 2.2.7
      -Input contig: /tmp/tmpkKUAw8/files/2/1/e/dataset_21ee7f6a-b141-4f58-9edf-40cf6498124b.dat
      +Input contig: /corral4/main/objects/e/5/0/dataset_e5065bcc-fb2c-4433-9450-9d8a93e8a5f9.dat
       out header: out
      -Thread: 1
      -Located reads file [/tmp/tmpkKUAw8/files/e/9/9/dataset_e996d3cb-de7d-4e64-a9f8-75cd61e9f791.dat]
      -Running Bowtie2 on reads file [/tmp/tmpkKUAw8/files/e/9/9/dataset_e996d3cb-de7d-4e64-a9f8-75cd61e9f791.dat]...this may take a while...
      -Searching against 107 marker genes to find starting seed contigs for [/tmp/tmpkKUAw8/files/2/1/e/dataset_21ee7f6a-b141-4f58-9edf-40cf6498124b.dat]...
      +Min contig length: 1000
      +Max iteration: 50
      +Probability threshold: 0.5
      +Thread: 6
      +Located reads file [/corral4/main/objects/a/8/a/dataset_a8acc970-104f-4395-ba76-033c28273aa6.dat]
      +Running Bowtie2 on reads file [/corral4/main/objects/a/8/a/dataset_a8acc970-104f-4395-ba76-033c28273aa6.dat]...this may take a while...
      +Searching against 107 marker genes to find starting seed contigs for [/corral4/main/objects/e/5/0/dataset_e5065bcc-fb2c-4433-9450-9d8a93e8a5f9.dat]...
       Try harder to dig out marker genes from contigs.
       Done data collection. Running MaxBin...
      -Command: /home/berntm/miniconda3/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.reads.abund1 -seed out.seed -out out -min_contig_length 1000 
      +Command: /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.reads.abund1 -seed out.seed -out out -min_contig_length 1000 -max_run 50 -prob_threshold 0.5 -thread 6
       Minimum contig length set to 1000.
       Reading seed list...
       Looking for seeds in sequences.
      @@ -37,13 +40,13 @@
       Minimum probability for binning: 0.50
       Ignoring 0 bins without any sequences.
       Number of unclassified sequences: 0 (0.00%)
      -Elapsed time:  0 days 00:00:01
      +Elapsed time:  0 days 00:00:00
       
       Deleting intermediate files.
       
       
       ========== Job finished ==========
      -Yielded 2 bins for contig (scaffold) file /tmp/tmpkKUAw8/files/2/1/e/dataset_21ee7f6a-b141-4f58-9edf-40cf6498124b.dat
      +Yielded 2 bins for contig (scaffold) file /corral4/main/objects/e/5/0/dataset_e5065bcc-fb2c-4433-9450-9d8a93e8a5f9.dat
       
       Here are the output files for this run.
      
      

    Command Line:

    Exit Code:

    • 0

    Standard Error:

    • Attaching package: 'gplots'
      
      The following object is masked from 'package:stats':
      
          lowess
      
      

    Standard Output:

    • MaxBin 2.2.7
      Input contig: /corral4/main/objects/e/5/0/dataset_e5065bcc-fb2c-4433-9450-9d8a93e8a5f9.dat
      out header: out
      Min contig length: 1000
      Max iteration: 50
      Probability threshold: 0.5
      Thread: 6
      Located reads file [/corral4/main/objects/a/8/a/dataset_a8acc970-104f-4395-ba76-033c28273aa6.dat]
      Running Bowtie2 on reads file [/corral4/main/objects/a/8/a/dataset_a8acc970-104f-4395-ba76-033c28273aa6.dat]...this may take a while...
      Reading SAM file to estimate abundance values...
      Searching against 107 marker genes to find starting seed contigs for [/corral4/main/objects/e/5/0/dataset_e5065bcc-fb2c-4433-9450-9d8a93e8a5f9.dat]...
      Running FragGeneScan....
      Running HMMER hmmsearch....
      Try harder to dig out marker genes from contigs.
      Done data collection. Running MaxBin...
      Command: /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.reads.abund1 -seed out.seed -out out -min_contig_length 1000 -max_run 50 -prob_threshold 0.5 -thread 6
      Minimum contig length set to 1000.
      Reading seed list...
      Looking for seeds in sequences.
      	contig-201_2 [2.848706]
      	contig-201_100 [2.993483]
      Get 2 seeds.
      
      Start EM process.
      Iteration 1
      Iteration 2
      Iteration 3
      Iteration 4
      Iteration 5
      Iteration 6
      Iteration 7
      Iteration 8
      Iteration 9
      Iteration 10
      Iteration 11
      Iteration 12
      Iteration 13
      Iteration 14
      
      EM finishes successfully.
      
      Classifying sequences based on the EM result.
      Minimum probability for binning: 0.50
      Ignoring 0 bins without any sequences.
      Number of unclassified sequences: 0 (0.00%)
      Elapsed time:  0 days 00:00:00
      
      Rscript /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/heatmap.r out.marker out.marker.pdf
      null device 
                1 
      out.001.marker.fasta
      Deleting intermediate files.
      
      
      ========== Job finished ==========
      Yielded 2 bins for contig (scaffold) file /corral4/main/objects/e/5/0/dataset_e5065bcc-fb2c-4433-9450-9d8a93e8a5f9.dat
      
      Here are the output files for this run.
      Please refer to the README file for further details.
      
      Summary file: out.summary
      Marker counts: out.marker
      Marker genes for each bin: out.marker_of_each_gene.tar.gz
      Bin files: out.001.fasta - out.002.fasta
      Unbinned sequences: out.noclass
      Marker plot: out.marker.pdf
      
      Store abundance information of reads file [/corral4/main/objects/a/8/a/dataset_a8acc970-104f-4395-ba76-033c28273aa6.dat] in [out.abund1].
      
      
      ========== Elapsed Time ==========
      0 hours 0 minutes and 10 seconds.
      
      

    Traceback:

    Job Parameters:

    • Job parameter Parameter value
      intype_cond {"__current_case__": 0, "intype_select": "rds", "output_abundances": true, "reads": {"values": [{"id": 113090951, "src": "hda"}]}, "reassembly": false}
      adv_cond {"__current_case__": 1, "adv_select": "yes", "markerset": "107", "max_iteration": "50", "min_contig_length": "1000", "output_log": true, "output_marker": true, "output_markers": true, "plotmarker": true, "prob_threshold": "0.5"}
      __job_resource {"__current_case__": 0, "__job_resource__select": "no"}
      chromInfo "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
      dbkey "?"
      __input_ext "fasta"
  • ❌ toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2 (Test Test roary 3.13.0+galaxy2 #4)

    Problems:

    • Collection element 001 of collection reassembly_bins:  different than expected, difference (using diff):
      ( /tmp/tmpvxv3v_m4out.001.fasta v. /tmp/tmps_c7aqccout.001.fasta )
      --- local_file
      +++ history_data
      @@ -1,49 +1,49 @@
       >scaffold_0
      -ATTGAAGGGGTTATCAGCCAGTTACAGGCTACGGCGATGAGTGCGCGTGCGCAGGAATCACTGCCGCAACCGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCTGCCCGCACGCAGGCAGAAAAATTCACTCTCGGTGAACCCGGCGTGGCGTTAAACGATGTGATGACCGATATGCAAAAAGCCTCAGTTTCTATGCAAATGGGGATTCAGGTGCGTAATAAGCTGGTGGCGGCGTATCAGGAAGTGATGAGCATGCAGGTGTAGGTTTTGTAACCTGTTGTTAATTACATCCGATCTCACCGCGTGGGGCATGGATGGGGCAAACTCACTCAATTTCTGGTTTAAAATGGATACCTGATCCTGAACGTTTTCTGCCATCCACGATCCGTATACGCGATAACCCCCCTGAACATCAGAGCGTCTCATTTGACACATCACCACGTCGGATGTTGTTACGACCACAGACGCAACAGTAACCTCTGGATAATTTAATCTTTGTTGATGTTTTTATTCATATTCCGGGCGATGGATATGAGCGATTTTTGATAGTGGTAATTTTATTGTGTTTTAGAATGCGCCCTGGGCAATATAATTTATTAAACAGGAGTGTAAATGTTTCCATTAAATGATCTTTCGTTAAAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGTATCTGATGATGCAATCATAAATGAATTATCAAGTGAGTTAGTCAGTTGTCTTGGAAATGGTAAGTTTACACCAATTAGTGAAGACAGCAAATTATTTAATATGCTGTCAGAATTTAAGTTATTGCACTCAGAATATTTCGAATGGGGTGATTATAGTCTCTGGTTTCAAGATTTCTCGATTTATAATAAGATAGGTTTTATCATGATAGAAAAAATCAGGGAACTGGTAACCCACCCATTCGGCATAAATTAGAGTTTATATCGACTAATATTGCAGAGTTTCTAGACAACTTTACGAAAATTACAGATTCCAGACTTTGCAAAGGTTTCAGCGACTGGGCTAATTCAGTAAAAGAAGGCGCATCGAATGACTTCAAAAAAAATGTGGATATAGCATTGGTGAGATTGTTTAAATGTGTTGAACTCCACAATAGTAAACTTGACTTAACAGATCTTCACTTGGGGTCTTTGCCACCTCTTCCATCCTGGATTGAGGTGCTTTATCTTCGTCATAATGGCCTTGCCACAATACAAATTCCCAAATTCTGCAAAGAATTAGAGCTCGATTTCAATAATTATATGGTATTTCCAAAAGTATCCGATGGAATTACCCAGGTCTCCGTAGATAATAATCTGATATCGCGTGTTGACTCATCTCCGTCAAAGGCTATGACAATTTCTATTTATCGCAATAAAATATGGTAAATACCAGCAATGCCTGAGACTACTAAGCTGTTTAATTGTGGCGATAATAAGATAAAAGAAATTCAATACTTCCCAAATCATCTGGAGAAAGCACGTATGGAGTGTGATATTGAGGTTGTCTCTGCGATATATAGCAATAAAGAATTACTTTTTAAAGAATGTAATTCTTTTGAAGAGACATTTTTATATCATGGACTTTGACAGGGATTTGCTATGAAAGATCGCAGCGAAAATATATTGTTACGAATCCCGCTGATTATGATAAATATTCCGATATGGTTAAAAAGTATGTAATAGATGGTGAGGAACTCATAATTAAATATTAAATGTAATTAATTAGGCGCAATTGTGTCACTGGAATAGAGGTTTCTTGTGGCGCATGTGGAAGGGGCGTCTATGGACAAGGCGTTTCCTGCTGGTGATAAATAAAG
      +CTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGACACAATTGCGCCTAATTAATTACATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGCTTAGTAGTCTCAGGCATTGCTGGTATTTACCATATTTTATTGCGATAAATAGAAATTGTCATAGCCTTTGACGGAGATGAGTCAACACGCGATATCAGATTATTATCTACGGAGACCTGGGTAATTCCATCGGATACTTTTGGAAATACCATATAATTATTGAAATCGAGCTCTAATTCTTTGCAGAATTTGGGAATTTGTATTGTGGCAAGGCCATTATGACGAAGATAAAGCACCTCAATCCAGGATGGAAGAGGTGGCAAAGACCCCAAGTGAAGATCTGTTAAGTCAAGTTTACTATTGTGGAGTTCAACACATTTAAACAATCTCACCAATGCTATATCCACATTTTTTTTGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCTGAGTGCAATAACTTAAATTCTGACAGCATATTAAATAATTTGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACTGGCTGATAACCCCTTCAAT
       >scaffold_1
      -CTGAATACGCTATACCACAAAAAGTGACGATTAGTATTGGCGCTGTTGTGACTCAGGAAAATGCGTTAAACCCAAATGAGATCTATCGACTGGCTGATAACGCACTTTACGAGGCGAAAGAGACCGGGCGTAATAAGGTGGTTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGACACAGGCCTAAGCGAGGTTCTTGTTTTCAAATTGTTCCGGACTGAGGCCGCCACACCAACTGTGCCGCCGCCACCGATTGTAATCACATTCGATATAATTAAACACCGTTGCCCGCATTATTTCCCGGCTGATAAAGTGTTCTCCATGGATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGCTGAACAGTACTGGCCTCCACGGTCCGTGTGAACGATAACGTTCCGGGGCCTCTTACGCCGCCACAGCGCCATCTGCAGGGCATCGCAGGCCAGTTGCGCCGTCATGCGTGGCGACATTGACCAGCCAATAACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCTGAACTTCCGGGAGGCCTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGTCGCAGTGTTGGCGGAACTGCTGACGCGTGCTTATCCTTGTCCGCCGCTGACACCACGTATACCAGCCGCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGAAGACGGCGTTCAGGCAATGCGCGATTATCTTGCCGGACTGGATATCGCTTCGCCAGAGCATCAGGTTCTGATGAACGTAACAGCAAAAAGCGAGGTCGCTCCGTCAATTATCAAAGAAAATCTCTCATTACACTTAACTCATACGGTGAAATGGACTGAATCTCTCGATACATTTCTGAATATGCCAACCCCGGTAGCTTTCCTTGAAATAAGTAATAAGCCCTATTTGGGGAATATGTTAAATGATTTTGCTGGCGTGG
      +CCACGCCAGCAAAATCATTTAACATATTCCCCAAATAGGGCTTATTACTTATTTCAAGGAAAGCTACCGGGGTTGGCATATTCAGAAATGTATCGAGAGATTCAGTCCATTTCACCGTATGAGTTAAGTGTAATGAGAGATTTTCTTTGATAATTGACGGAGCGACCTCGCTTTTTGCTGTTACGTTCATCAGAACCTGATGCTCTGGCGAAGCGATATCCAGTCCGGCAAGATAATCGCGCATTGCCTGAACGCCGTCTTCCATCAAACGCGTGTGCCAGGCACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTGGTGTCAGCGGCGGACAAGGATAAGCACGCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTGCGCCGTCAGGGACTGAGGGCAAAGGCCTCCCGGAAGTTCAGCCCGGTCAGCTACCGCGCACACGGCCTGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCGCCACGCATGACGGCGCAACTGGCCTGCGATGCCCTGCAGATGGCGCTGTGGCGGCGTAAGAGGCCCCGGAACGTTATCGTTCACACGGACCGTGGAGGCCAGTACTGTTCAGCAGATTATCAGGCGCAACTGAAGCGGCATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTTATCAGCCGGGAAATAATGCGGGCAACGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAAATGCCGCTTTATGGTGACTCACAAAAATTCACCACATCCCTCACAACCACCTTATTACGCCCGGTCTCTTTCGCCTCGTAAAGTGCGTTATCAGCCAGTCGATAGATCTCATTTGGGTTTAACGCATTTTCCTGAGTCACAACAGCGCCAATACTAATCGTCACTTTTTGTGGTATAGCGTATTCAG
       >scaffold_2
       AAAGGCGCGTAACAGATTTAGAGGTGCTTTTGCTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTCGTTGACCAGAACTACACCGTGGCAGATGCAGCCAGCGCTATGGATGTCGGCCTTTCCACAATGACGCGATGGGTGAAACAATTACGTGATGAACGGCAGGGCAAAACACCAAAAGCCTCCCCCATTACCCCGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGCTGGTTTGTCAGCCAAAATGAGCATTCGTGCGATAGCTACTGCGCTGAATCGCAGTCCTTCGACGATCTCACGTGAAGTTCAGCGTAATCGGGGCAGACGCTATTACAAAGCTGTTGATGCTAATAACCGAGCCAACAGAATGGCGAAAAGGCCAAAACCGTGCTTACTGGATCAAAATTTACCATTGCGAAAGCTTGTTCTGGAAAAGCTGGAGATGAAATGGTCTCCAGAGCAAATATCAGGATGGTTAAGGCGAACAAAACCACGTCAAAAAACGCTGCGAATATCACCTGAGACAATTTATAAAACGCTGTACTTTCGTAGCCGTGAAGCGCTACACCACCTGAATATACAGCATCTGCGACGGTCGCATAGCCTTCGCCATGGCAGGCGTCATACCCGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTAGGGCATTGGGAGGGCGATTTAGTCTCAGGTACAAAAAACTCTCATATAGCCACACTTGTAGACCGAAAATCACGTTATACGATCATCCTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGGGGAACAAATGAGAACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAGTAGCCTTTTTAATATTTCATTCTCCATTTCAATCCGTTGTAGCTTTTTCCTCAGCTTACGTATTTCGATTTGTTCTGGTGTTATCGGAGAGGCTTTTGGTGT
       >scaffold_3
       GGAACTGAATTTCAAAGCTCGTATGGAATCCCCAAGCAAAGATGCCACCCCGGGCAACGTTTACGCTCAGGCTGACTACAAGATTGCTTACGAGTAATCGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTATTGCCCGGGGATGGGGAGTAAGCTTAGTCAGCCGTTGTCTCCGGGTGTCGCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGCAGAGTGGCCGTGAAAGAAAGCAATCAGCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCACGTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTCACTACCGGCGGCTTCAACAGTGAAACAGTACAGGACGTCATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTC
       >scaffold_4
      -ATGAATAGACAGCCAATATATTATTGCGATTAATAAGCAACCGAATGCCCAGCTGTTTTTTTAAAGGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGCCGCGACGACACATAATGCGCATCACCACGATGTCGGTGGCTTCACCGCCGAGAGTGAAGGCCGGAACCTGCCAGCCGCGCAGACGCAGACGTTCAGAGAGGTCATACAGGGTGTATCCCGGATCTTCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCGATTTCATCCGCCAGATAAGCGGCAACCTGGTAAGAGGCGTTCTGTACTTTGGTATAGCCTTCACGACCGAGGCGCAGGAATTCATAGTACTGTGCAATTACCTGACCCGCCGGGCGGGAGAAGTTGATGGCAAAAGTACCAATTTGACCACCCAGGTAGTCAACGTTGAACACCAGTTCCTGCGGCAGCGCTTCTTCGTCACGCCAGATAACCCAGCCGCAGCCCAGCGGAGCCAGACCGAATTTATGGCCTGAAGCACTGATCGATTTCACACGCGGCAGGCGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAATTTATCCAGCGCATCGTGCAGCGGTTGTGGGAACTCATAGTTACCAGTGTAGGTCACGCCGAAAGTCGGCACCACGCCGATGGTGTTTTCGTCACAGGCTTCAATCATGCGTTTCGGGTCCATAAACAACTGACCGGGGCGCATAGGGATCTCACGCAGCTCCACATCCCAGTAGCGGGCGAATTTATGCCAGCAGATTTGTACCGGACCGCACACCAGGTTTGGTTTATCCGTTGGTTTGCCTGCAGCTTCCATACGCTTGCGCCAACGCCATTTCATCGCCATCCCGCCGAGCATACAGGCCTCGGAAGAACCAATGGTGTTGGTGCCAACGGCCTGACCATTTTTCGGCGCAGGCGCATGCCACAGATCGGCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAATCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATAATTCGTCATTGATAATCTGGAATGCGACATCGTCGCGCATTTCGTGCAGCGGAAAACGTTTTGATTCTGCGATAGTGGAAATAGACTTCGCACCAAAACGTGAATCGAGTAGTTCTGAGCGGAAATCCGTTAACAGCTTCTGGTCCATTTCGAACTCCTTAAATTTATTTGAAGGCAATAAAAAAGTAGGATTTATCCGCAATGGAAGCAAGGCATTACAGGCTTAATTTAAATAACAAAATCCTAAGCAGAAAAACGACTTTTTATAATATAA
      +TTATATTATAAAAAGTCGTTTTTCTGCTTAGGATTTTGTTATTTAAATTAAGCCTGTAATGCCTTGCTTCCATTGCGGATAAATCCTACTTTTTTATTGCCTTCAAATAAATTTAAGGAGTTCGAAATGGACCAGAAGCTGTTAACGGATTTCCGCTCAGAACTACTCGATTCACGTTTTGGTGCGAAGTCTATTTCCACTATCGCAGAATCAAAACGTTTTCCGCTGCACGAAATGCGCGACGATGTCGCATTCCAGATTATCAATGACGAATTATATCTTGATGGCAACGCTCGTCAGAACCTGGCCACTTTCTGCCAGACCTGGGACGACGAAAATGTCCACAAATTGATGGATTTATCCATTAACAAAAACTGGATCGACAAAGAAGAATATCCGCAATCCGCAGCCATCGACCTGCGTTGCGTAAATATGGTTGCCGATCTGTGGCATGCGCCTGCGCCGAAAAATGGTCAGGCCGTTGGCACCAACACCATTGGTTCTTCCGAGGCCTGTATGCTCGGCGGGATGGCGATGAAATGGCGTTGGCGCAAGCGTATGGAAGCTGCAGGCAAACCAACGGATAAACCAAACCTGGTGTGCGGTCCGGTACAAATCTGCTGGCATAAATTCGCCCGCTACTGGGATGTGGAGCTGCGTGAGATCCCTATGCGCCCCGGTCAGTTGTTTATGGACCCGAAACGCATGATTGAAGCCTGTGACGAAAACACCATCGGCGTGGTGCCGACTTTCGGCGTGACCTACACTGGTAACTATGAGTTCCCACAACCGCTGCACGATGCGCTGGATAAATTCCAGGCCGATACCGGTATCGACATCGACATGCACATCGACGCTGCCAGCGGTGGCTTCCTGGCACCGTTCGTCGCCCCGGATATCGTCTGGGACTTCCGCCTGCCGCGTGTGAAATCGATCAGTGCTTCAGGCCATAAATTCGGTCTGGCTCCGCTGGGCTGCGGCTGGGTTATCTGGCGTGACGAAGAAGCGCTGCCGCAGGAACTGGTGTTCAACGTTGACTACCTGGGTGGTCAAATTGGTACTTTTGCCATCAACTTCTCCCGCCCGGCGGGTCAGGTAATTGCACAGTACTATGAATTCCTGCGCCTCGGTCGTGAAGGCTATACCAAAGTACAGAACGCCTCTTACCAGGTTGCCGCTTATCTGGCGGATGAAATCGCCAAACTGGGGCCGTATGAGTTCATCTGTACGGGTCGCCCGGACGAAGGCATCCCGGCGGTTTGCTTCAAACTGAAAGATGGTGAAGATCCGGGATACACCCTGTATGACCTCTCTGAACGTCTGCGTCTGCGCGGCTGGCAGGTTCCGGCCTTCACTCTCGGCGGTGAAGCCACCGACATCGTGGTGATGCGCATTATGTGTCGTCGCGGCTTCGAAATGGACTTTGCTGAACTGTTGCTGGAAGACTACAAAGCCTCCCTGAAATATCTCAGCGATCACCCGAAACTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTGCTTATTAATCGCAATAATATATTGGCTGTCTATTCAT
       >scaffold_5
       GACCTCATCGTTAGGTTGTGAATGAGAGTACGTTCACTTTTCTTCTGAACGTGAGATTAAGTGTAGTCAGCAATTTGGCTTAGGATTATTTATTCAGAATTTTTAACCGTCACGTTGCGGCAAACCAGGTACCATTGCGCCAGTGACGCCGCCAGATAGCCGCCAGAGAAAGCCCGCGCAACGCCAGAAAGACGGTTAATGCCAGCCACAAAGCATGATTACCCAGCCACGGCAGCGTAAGGAGCGTCAGCGCAAAACCTGCGGCGGCCACCGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATAACACCAGACGCCAACCACCGGCAAAATCACCTGCCAGATAAGATAGCGGTCAGCCAGCTGCTGAATCTGGGTTAACGACGTCAGTAACGCAATGATGTGTTCCCCAGCCAGCAAATAAACCACCGAAAACAGTAACGCTACGATCCCCGACTGGCGGCACGCTGCCCGCCAGACATCCAGCAACTGGCTACCGTCGCGCGCACCGTATGCCTGACCGGAGTGCGCTTCAACCGCGTAGGCAAAACCATCCAGCGCATAGGCGGTAAAGGTGAGTAGCGTCATCAGAACCGCGTTAACAGCGATAATGTCACTCCCCAGTCGCGCGCCAAGTACGGTGATCGCGCCGAAACAGAGTTGCAACAACAGCGAACGCAGCATGATATCGCGGTTAAGCGCCAGCAAGCGACGGAAGTTTCCTCGCCAGGCAGTTTTCAGCATTTCGCCGGAAATTCCGCGTAGTTTGAGGATTTTACGCACCATTAGCAGACCAATCAGCAATGTTGCATATTCCGCAATAACCGTCGCCAGCGCCGCGCCCTGCACGTTCATATGCAGCCCCATCACCAGCCAGACATCCAGCACAATGTTGAGGATATTGCCGACCACTAACAAAATTACTGGCGCACGGGCATATTGCACGCCGAGTAACCAACCGAGTAATACCAGATTCGCCAGCGACGCCGGTGCGCTTAACCAGCGGATTTCAAGAAAGCGCCGCGCCTGTTCCAGGACTGCCTCACTACCGCCAACAATATGCAGCGCCAGATCGATAATCGGCGTACGCAGCAGCGCAATTAACGCCCCAGCCCCCAACGCCAACAGCAACGGTTGCACCAGCGTACGGGCTAATGCCTGAGGATTTTTGGCACCATAAGCCTGCGCAGTCAGCCCGGTGGTGCTCATGCGTAAAAACAGCAACAGCATAAAGAGAAAGCTGGTCGCCGTTGCACCAACCGCCACGCCGCCCAAATAAACCGGGCTATCAAGATGACCAATTACCGCCGTATCGACCAGTCCCAGCAACGGAACGGTGATATTGGAGAAAATCATGGGTAAGGCGAGATGCCAGAGTGCTTTATCAGATGAAGTGAGGAATGCCATGCAGACAAGCCTGATGAAGAGAGATGAAAAACAAACCGCGACGCCAGGCGGCATCGCGGTCTCAGAGATATGTTACAGCCAGTCGCCGTTGCGAATAACCCCAACCGCCAGCCCTTCAATGGTGAAGCTCTGCTGACGAAGGTCAACGACAATTGGTTTA
       >scaffold_6
       GAACGGCATGTTTGGTGCGTGTCTGATGGGTAATGCGCAGCTGGTTGCCGACTGCGTGAAAGCGATGCGCGATGTGGTGTCGATTCCGGTGACGGTGAAAACGCGTATTGGCATCGACGACCAGGACAGCTATGAATTTCTCTGCGATTTCATCAATACCGTTTCCGGCAAAGGCGAGTGTGAGATGTTCATCATCCACGCACGTAAAGCCTGGCTTTCGGGGTTAAGCCCGAAAGAAAACCGTGAAATCCCGCCGCTCGATTATCCGCGTGTGTATCAACTGAAGCGTGACTTTCCGCATCTGACAATGTCGATTAACGGTGGTATCAAGTCGCTGGAAGAGGCCAAAGCACACCTGCAACATATGGATGGCGTGATGGTCGGGCGCGAGGCGTATCAGAATCCGGGTATTCTGGCGGCGGTAGACCGGGAGATCTTTGGTTCCTCGGATACCGATGCCGATCCGGTGGCGGTAGTGCGCGCCATGTATCCGTACATTGAGCGTGAACTCAGCCAGGGGACGTATCTCGGCCATATTACCCGGCATATGTTGGGCTTGTTCCAGGGTATTCCTGGCGCGCGGCAGTGGCGGCGTTATTTAAGTGAAAATGCCCATAAAGCGGGTGCAGACATTAATGTGCTGGAACACGCGCTCAAACTGGTGGCGGATAAGCGTTAACTTTTCACCAAAAAGTAGTCAAATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGGTGGTGTGGGTTATTAAGGCGATTAAAGCACCAAAAGTGCCGAAATATCAGCGTTATGACCGCTGGCGTTACTAAGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTG
       >scaffold_7
      -AACTGCTGAATGCGCTGTCACAGGCTTCTTATATTCATGTACGTGAAGGTCGTGGGGCGATTAACTTCTCCCGCTTCAACCAGGCCTACATGATGCATGCCACCACCTCCCCGCTGTATGCCATCTGCGCATCCAACGACGTGGCGGTGTCGATGATGGACGGCAACAGCGGCCTGTCACTGACACAGGAAGTGATTGACGAAGCGGTTGATTTCCGTCAGGCGATGGCGCGGCTATATAAAGAGTTCACCGCTGACGGTAGCTGGTTCTTCAAACCGTGGAACAAAGAAGTCGTCACCGACCCACAAACCGGCAAACCTATGACTTTGCTGACGCACCAACCAAACTGCTGACCACCGTTCAGGACTGCTGGGTAATGCATCCGGGCGAAAGCTGGCACGGCTTCAAAGATATTCCGGATAACTGGAGTATGCTCGACCCGATTAAAGTCAGCATCCTTGCTCCGGGAATGGGTGAAGATGGTGAACTGGAAGAAACCGGTGTTCCGGCGGCGCTGGTCACTGCCTGGCTTGGTCGCCACGGCATTGTACCTACCCGCACCACTGACTTCCAAATTATGTTCCTGTTCTCTATGGGCGTAACCCGTGGGAAATGGGGAACTCTGGTTAACACCCTTTGCTCCTTCAAACGCCACTATGACGCCAACACACCGCTGGCGCAGGTGATGCCGGAACTTGTTGAACAATATCCTGACACTTACGCGAACATGGGGATTCACGATCTGGGTGACACCATGTTTGCCTGGCTGAAAGAAAACAACCCTGGCGCACGGTTGAACGAAGCCTATTCCGGCCTGCCGGTGGCGGAAGTCACCCCGCGTGAAGCGTACAACGCGATTGTCGACAACAATGTCGAACTGGTATCCATTGAAAATCTGCCAGGACGCATCGCGGCAAACTCAGTTATCCCGTATCCGCCAGGAATCCCGATGCTGCTGTCTGGTGAAAACTTCGGCGATAAAAACAGTCCGCAAGTAAGTTATTTACGCTCGCTGCAATCCTGGGACCACCATTTCCCTGGATTTGAACACGAAACTGAAGGGACTGAAATTATTGACGGTATTTACCACGTTATGTGCGTGAAAGCGTAACCACTATTCCGCTGAAGGCGTAATTGTTTAAATAACATTACGCCGCCTGGCCTTAGGCCTTTTGAGTATGGCAACGTTTTCATAAAAATTGCTGCAAACAAAAATGTCATACTTTTTGCGCGGCCCCACCCCGCGCTTTTTTTTGCCTGTTATTTATCCTGTAAAAAAATATGTACATGAGAAATTACTATAAAAATTTGTACTATTAGTAAAACTCGTTATTTTTATGCATGTTTATATTCATCATACAATTATATAACCATTTCCCGGTATCGCTTTGCTTTAGCGAGAACTGGTCTTTTATTCGCACTCAGGAGTACATGTATGAGGATTTGCAGCGACCAACCTTGTATTGTTTTATTGACTGAAAAAGATGTCTGGATAAGGGTGAATGGG
      +CCCATTCACCCTTATCCAGACATCTTTTTCAGTCAATAAAACAATACAAGGTTGGTCGCTGCAAATCCTCATACATGTACTCCTGAGTGCGAATAAAAGACCAGTTCTCGCTAAAGCAAAGCGATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGTGGTAAATACCGTCAATAATTTCAGTCCCTTCAGTTTCGTGTTCAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCGGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAGGCCGGAATAGGCTTCGTTCAACCGTGCGCCAGGGTTGTTTTCTTTCAGCCAGGCAAACATGGTGTCACCCAGATCGTGAATCCCCATGTTCGCGTAAGTGTCAGGATATTGTTCAACAAGTTCCGGCATCACCTGCGCCAGCGGTGTGTTGGCGTCATAGTGGCGTTTGAAGGAGCAAAGGGTGTTAACCAGAGTTCCCCATTTCCCACGGGTTACGCCCATAGAGAACAGGAACATAATTTGGAAGTCAGTGGTGCGGGTAGGTACAATGCCGTGGCGACCAAGCCAGGCAGTGACCAGCGCCGCCGGAACACCGGTTTCTTCCAGTTCACCATCTTCACCCATTCCCGGAGCAAGGATGCTGACTTTAATCGGGTCGAGCATACTCCAGTTATCCGGAATATCTTTGAAGCCGTGCCAGCTTTCGCCCGGATGCATTACCCAGCAGTCCTGAACGGTGGTCAGCAGTTTGGTTGGTGCGTCAGCAAAGTCATAGGTTTGCCGGTTTGTGGGTCGGTGACGACTTCTTTGTTCCACGGTTTGAAGAACCAGCTACCGTCAGCGGTGAACTCTTTATATAGCCGCGCCATCGCCTGACGGAAATCAACCGCTTCGTCAATCACTTCCTGTGTCAGTGACAGGCCGCTGTTGCCGTCCATCATCGACACCGCCACGTCGTTGGATGCGCAGATGGCATACAGCGGGGAGGTGGTGGCATGCATCATGTAGGCCTGGTTGAAGCGGGAGAAGTTAATCGCCCCACGACCTTCACGTACATGAATATAAGAAGCCTGTGACAGCGCATTCAGCAGTT
       >scaffold_8
       GCGGGATGTTCATTCTTCATCACTTTTAATTGATGTATATGCTCTCTTTTCTGACGTTAGCCTCCGACGGCAGGCTTCAATGACCCAGGCTGAGAAATTCCCGGACCCTTTTTGCTCAAGAGCGATGTTAATTTGTTCAATCATTTGGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTCGTTGACATGAGGTTGCCCCGTATTCAGTGTCGCTGATTTGTATTGTCTGAAGTTGTTTTTACGTTAAGTTGATGCAGATCAATTAATACGATACCTGCGTCATAATTGATTATTTGACGTGGTTTGATGGCCTCCACGCACGTTGTGATATGTAGATGATAATCATTATCACTTTACGGGTCCTTTCCGGTGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGCATTTCCGTTCTTCTTCGTCGTAACTTAATGTTTTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAACGAGCTTTTGGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCAGGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTATGCCGAAAGGGATGCTGAAATTGAGAACGAAAAGCTGCGCCGGGAAGTTGAAGAACTGCGGCAGGCCAGCGAGACAGATCTCCAGCCAGGGACTATTGAGTACGAACGCCATCGACTTACGCGTGCGCAGGCCGACGCACAGGAGCTGAAAAATGCCAGAGACTCCGCTGAAGTGGTGGAAACCGCATTCTGTACTTTCGTGCTGTCGCGGATCGCAGGTGAAATTGCCAGTATTCTCGACGGGATCCCCCTGTCGGTGCAGCGGCGTTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATAACCGCGCTGACAGACAATACGCAGGGGGCAGCAGGTCTTGAGTTATACGAGGTGTATAACAACGGATATCCAACAGCGTATGGAAATATCATTCACCTGAAAGGGATGACAGCCGTTGGCGAAGGTGAGTTACTCATCGGCTGGAGTGGTACAAGCGGTGCTCATGCTCCGGCATTTATTCGTTCACGACGGGATACGACCGACGCAAACTGGTCGCCGTGGGCGCAGCTTTACACCTCGGCTCATCCTCCTGCAGAGTTTTATCCAGTCGGTGCACCAATCCCGTGGCCATCAGATACCGTTCCGTCTGGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACTGCTGCAAGCGCAGGCGCGCATGCACATACTGTCGGTATTGGTGCTCATACGCACTCCGTTGCGATTGGTTCACATGGACACACCATCACCGTTAACGCTGCTGGTAACGCGGAAAACACCGTCAAAAACATCGCATTTAACTATATTGTGAGGCTTGCATAATGGCATTCAGAATGAGTGAACAACCACGGACCATAAAAATTTATAATCTGCTGGCCGGAACTAATGAATTTATTGGTGAAGGTGATGCATATATTCCGCCTCATACAGGTCTGCCAGCAAACAGTACCGATATTGCACCGCCAGATATTCCGGCTGGCTTCGTGGCTGTTTTCAACAGTGATGAGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATTGCAACGGAGGAAGAAATCTCGTTGCTGGAAGCATGGAAAAAGTATCGGGTATTGCTGAACCGTGTTGATACGTCAACTGCACAGGATATTGAATGGCCAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCGCCTGTTTCTGTTCTTCATTTAACACAGGTGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGAATGAGTGCGTTCAAGTAAAAGGTCTCGTTCAAATTCAGCGACTGCTGAAATTACTTGCATCATCATTTTTCCTGTTGGACTGGTCAGGTCAATGCCCCCCAATGCTAAGCAATGCACTCTGATACCTGTTTCGGTCAGTTGTTCCACTGTTTTCCTGATATCCATTGCATTACAACCAAGGCGATCCAGTTTTGTCACAATCAATTGATCACCACATTTCAGGCGAGCAAGCAACCGGTTAAAACCAGGACGCTCACTGGTTGCTGCTGAGCCGCTAATGTGTTCTTCGATTATTTGCTGAGGTTTGATTTTAAAACCTGCACTTTCGATTTCCCGGCGTTGATTTTCGGTGGTCTGATCCAGCGTTGATATCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTTCATATCATAATGCATCTCAGAAAATAATTATGATTATTTTTGT
      ********
      *SNIP *
      ********
      ->scaffold_515
      -TGGGTATGTCACGAAAATCGATGATTGGGCAGCTGCTGAACGTGGGCCGTCCGAGCGCCTGAGCGGTAGTCTGGCCTGTGCGGTCATTGCCGCAATGCAAGGCGCGCACATCATTCGTGTTCATGACGTCAAAGAAACCGTAGAAGCGATGCGGGTGGTGGAAGCCACTCTGTCTGCAAAGGAAAACAAACGCTATGAGTAATCGTAAATATTTCGGTACCGATGGGATTCGTGGTCGTGTAGGGGATGCGCCGATCACACCTGATTTTGTGCTTAAGCTGGGTTGGGCCGCGGGTAAAGTG
      ->scaffold_516
      -TATGAGCGAATGCTGCGCGGTGATGTGAAATATCGTTTTGTTATCGATAATCGCACACTAACAGACTGAAAAAATTAATAAATACCCTGTGGTTTAACATATTAACTTCGCTCTCCACTTAACTTTTTAGTTAAGGAGAGCGAAATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAATACTTCACACGTTAGTTATGAGCGATTTCTGATAGTGCCTGGTTTAATCAGAGCTTTATTATCTGCGACGTTTATTTTTATTTAAGA
       >scaffold_517
       GCAAACCCTTTTGGTATCCACAACTGCTGCTTATTATCAGCTGAAAGCAGAACACCAACCCATTTACCAAAGGATACCGAATTGGGTCGAATATCAACAGCAACATCAAAAACTGCTCCATGAGTGCAGCGTACAAGTTTATCTTGTGCGTACTCGCCGCGTTGAAAGTGAAGGCCTCTGAGTACATTTTTTGATGAACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATA
       >scaffold_518
      -GCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTATAAGATACCTTAACCCATTTTATTATTACACATCTAAAACATCACAAAAAAAATCACTTCACACACTATCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAA
      +TTTTATCTCCACCCGGTAATATTTGTGTGTAAAAAAAGGGTAGTGATAGTATCGTAAAGGAAATCGTTAACAACTATCAAAATGCGCTCATTTTAAAAAGTTATTATGTTCTCTGATAGTGTGTGAAGTGATTTTTTTTGTGATGTTTTAGATGTGTAATAATAAAATGGGTTAAGGTATCTTATAATTATTTAATAATTTGTTGTGTAAACCACTGATAAATCATAATCCAGTACGTCTTTAAACTACTGCGCTGTATCGCTGATAACTAAGCAGCTCACTGATACACCATGCTGGACGC
       >scaffold_519
       GGCGGTAATAACGGCTTCTTCCTGCTGAGTTTTCATCAGGTTGATAATTTCGGCTGCCGTTCTCACGCCGCCCATTTTGCTGCGCTTGAGATTCTGACCGTCGAGCAAGCCATTCAGTACTTCGGTCAGCTCCGCCAGCGCGGCTGGCTGCACGCCGCCAAAGGTGGCGATACGCAACATCACGTCGTGGCGCAGACGTTCATCGAACAACGCCAGAATATCGGCGGCTTGGGCGCGCTTCAGATGCACCAGAATGGTGGCGATAATTTGCGGATGCTCATCGCGAATCAGATCGGCGGC
       >scaffold_520
       TTCCATACAATTACCGCACATCCGATAGTATGTCACAGAAATGTGAAACAAAAGTGTAAGGCGAAGATCGGATGATCTTCGCCAGGCTATCAAGCGCGTTGACTGTCTTTCATCAACAAAGCGGTCATTGCGGAAATCAGGCATCCAGCCAGCAAATAAATGGCGACGCTATGCCAGTTCCCGGCAAAGTAAGTGATGAGTGCAGCGGCAATAAAAGGTGTAAATCCACCGCCAACCACACTGGCAACCTGATAACCGACTCCAGCGCCACTATAGCGATAACTGGCACCAAACATTTCG
       >scaffold_521
      -TAAGGCGGCGGCAATGAGCATCAATATAATGATGGGTGCGGAAGGCGAGGTTTTTGCCCACGTCAGGCCGTTGAGCGATCCGGCATTCCACAAACCTGCTGTTAGCGCCGTTTCTAAAGACGCTTTCAGCAACAGCCAGGTATTAAAGGCCACCAGCATGGCGCGAACGCCGATACCGATAATAATCAACCGAAAGGTGTCGATGCCGTTGCGCCAGGCGAGCAGCCAGACCAGCAGCGAAGTGACAATGCCGCCCACCATTGCTGACAGCGCGATAGCCGTCAGGTCCTGACCAAACA
      +GTTTAACGGTAACGGTGTCCCGAAACGAACCCGTTTCGGGACAATTTCCAAAGTCTGTTCACTGGCATTAGCAACGGAAAATATTGTTCTGAATACGCTTCAGAACAAAACAGGTGCGGTTCCGACAGGAATACCGTTTTAGGGGGATAATATGGCTACATCAGTACAGACAGGTAAAGCTAAGCAGCTCACATTACTTGGATTCTTTGCCATAACGGCATCGATGGTAATGGCTGTTTATGAATACCCTACCTTCGCAACATCGGGCTTTTCATTAGTCTTCTTCCTGCTATTAGGCG
       >scaffold_522
      -GTTTAACGGTAACGGTGTCCCGAAACGAACCCGTTTCGGGACAATTTCCAAAGTCTGTTCACTGGCATTAGCAACGGAAAATATTGTTCTGAATACGCTTCAGAACAAAACAGGTGCGGTTCCGACAGGAATACCGTTTTAGGGGGATAATATGGCTACATCAGTACAGACAGGTAAAGCTAAGCAGCTCACATTACTTGGATTCTTTGCCATAACGGCATCGATGGTAATGGCTGTTTATGAATACCCTACCTTCGCAACATCGGGCTTTTCATTAGTCTTCTTCCTGCTATTAGGCG
      +ACCGGGGAATATCAGAAAAATGTCATGGTTATGTGATGATTTGTCTGGGATTTTACTTCAGAGAAACGGGTGTCTGTTTAGTCAACAAAATAATCACAAACGCAACGGATGGGTTCTCGACGTTATTCACGACAGGCTCGTACATTACAGCGAGTAATAAAAAACCTGATATGCAAAGTCAAACCAATATTCATAATGTCTTTTTATTCACAACAATAAATAATTCAATAACAATCATTGAAATGAATGATGGTTTGTATAAGGAATATACGCTACCGCCCCACCCTGATAACATGATC
       >scaffold_523
      -ATTTCCTGAAGAGCCTCTGGATGTGGTCATTGGAAGAGCGGACCGGGCAATGTATGAGGGTAAGCAAACCGGAAGAAATCGCTGCATGTTTATTGACGAACAAAATGTGATTAACCGAGTTTAAGCTCCGTTTAACATTCATTGAGAAAACTGATGCTACTGTGTCAACGATTCGTTATCAGTGCAGGAAAATGCCTGTTAGCGTAAAAGCAAAACACAAATCTATCCATGCAAGCATTCACCGCCGGTTTACTGGCGGTTTTTTTTCGCCGTCATAAAAATCAGGCCCCTTGTACACA
      +TGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCTTAAACTCGGTTAATCACATTTTGTTCGTCAATAAACATGCAGCGATTTCTTCCGGTTTGCTTACCCTCATACATTGCCCGGTCCGCTCTTCCAATGACCACATCCAGAGGCTCTTCAGGAAAT
       >scaffold_524
      -ACCGGGGAATATCAGAAAAATGTCATGGTTATGTGATGATTTGTCTGGGATTTTACTTCAGAGAAACGGGTGTCTGTTTAGTCAACAAAATAATCACAAACGCAACGGATGGGTTCTCGACGTTATTCACGACAGGCTCGTACATTACAGCGAGTAATAAAAAACCTGATATGCAAAGTCAAACCAATATTCATAATGTCTTTTTATTCACAACAATAAATAATTCAATAACAATCATTGAAATGAATGATGGTTTGTATAAGGAATATACGCTACCGCCCCACCCTGATAACATGATC
      +TGTTTGGTCAGGACCTGACGGCTATCGCGCTGTCAGCAATGGTGGGCGGCATTGTCACTTCGCTGCTGGTCTGGCTGCTCGCCTGGCGCAACGGCATCGACACCTTTCGGTTGATTATTATCGGTATCGGCGTTCGCGCCATGCTGGTGGCCTTTAATACCTGGCTGTTGCTGAAAGCGTCTTTAGAAACGGCGCTAACAGCAGGTTTGTGGAATGCCGGATCGCTCAACGGCCTGACGTGGGCAAAAACCTCGCCTTCCGCACCCATCATTATATTGATGCTCATTGCCGCCGCCTTA
      
      

    Command Line:

    Exit Code:

    • 0

    Standard Error:

    • ==== MaxBin2 stderr ====
      sh: line 1: 48735 Segmentation fault      (core dumped) idba_ud -r out.reads.002 -o out.tmp --pre_correction --num_threads 6 > out.idba.out 2> out.idba.err
      ==== IDBA stderr ====
      

    Standard Output:

    • ==== MaxBin2 stdout ====
      MaxBin 2.2.7
      Input contig: /corral4/main/objects/e/5/0/dataset_e5065bcc-fb2c-4433-9450-9d8a93e8a5f9.dat
      out header: out
      Reassembly: 1
      Thread: 6
      Located reads file [/corral4/main/objects/a/8/a/dataset_a8acc970-104f-4395-ba76-033c28273aa6.dat]
      Running Bowtie2 on reads file [/corral4/main/objects/a/8/a/dataset_a8acc970-104f-4395-ba76-033c28273aa6.dat]...this may take a while...
      Reading SAM file to estimate abundance values...
      Searching against 107 marker genes to find starting seed contigs for [/corral4/main/objects/e/5/0/dataset_e5065bcc-fb2c-4433-9450-9d8a93e8a5f9.dat]...
      Running FragGeneScan....
      Running HMMER hmmsearch....
      Try harder to dig out marker genes from contigs.
      Done data collection. Running MaxBin...
      Command: /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.reads.abund1 -seed out.seed -out out -min_contig_length 1000 -thread 6
      Minimum contig length set to 1000.
      Reading seed list...
      Looking for seeds in sequences.
      	contig-201_2 [2.848706]
      	contig-201_100 [2.993483]
      Get 2 seeds.
      
      Start EM process.
      Iteration 1
      Iteration 2
      Iteration 3
      Iteration 4
      Iteration 5
      Iteration 6
      Iteration 7
      Iteration 8
      Iteration 9
      Iteration 10
      Iteration 11
      Iteration 12
      Iteration 13
      Iteration 14
      
      EM finishes successfully.
      
      Classifying sequences based on the EM result.
      Minimum probability for binning: 0.50
      Ignoring 0 bins without any sequences.
      Number of unclassified sequences: 0 (0.00%)
      Elapsed time:  0 days 00:00:00
      
      Performing reassembly. Reads file found.
      Separating reads according to the bins...
      Reading sam file out.sam0...
      Reading reads file /corral4/main/objects/a/8/a/dataset_a8acc970-104f-4395-ba76-033c28273aa6.dat...
      Reassembling bin 001
      Command: idba_ud -r out.reads.001 -o out.tmp --pre_correction --num_threads 6 1>out.idba.out 2>out.idba.err
      Placing reassembled contigs into out.reassem
      cp out.tmp/scaffold.fa out.reassem/out.001.fasta
      Reassembling bin 002
      Command: idba_ud -r out.reads.002 -o out.tmp --pre_correction --num_threads 6 1>out.idba.out 2>out.idba.err
      Placing reassembled contigs into out.reassem
      cp out.tmp/scaffold.fa out.reassem/out.002.fasta
      out.001.marker.fasta
      Deleting intermediate files.
      
      
      ========== Job finished ==========
      Yielded 2 bins for contig (scaffold) file /corral4/main/objects/e/5/0/dataset_e5065bcc-fb2c-4433-9450-9d8a93e8a5f9.dat
      
      Here are the output files for this run.
      Please refer to the README file for further details.
      
      Summary file: out.summary
      Marker counts: out.marker
      Marker genes for each bin: out.marker_of_each_gene.tar.gz
      Bin files: out.001.fasta - out.002.fasta
      Unbinned sequences: out.noclass
      
      Store abundance information of reads file [/corral4/main/objects/a/8/a/dataset_a8acc970-104f-4395-ba76-033c28273aa6.dat] in [out.abund1].
      
      
      ========== Elapsed Time ==========
      0 hours 0 minutes and 23 seconds.
      
      ==== IDBA stdout ====
      number of threads 6
      reads 5310
      long reads 0
      extra reads 0
      read_length 93
      kmer 60
      kmers 50115 49096
      merge bubble 0
      contigs: 11 n50: 297 max: 440 mean: 308 total length: 3388 n80: 262
      aligned 118 reads
      confirmed bases: 1314 correct reads: 22 bases: 0
      kmer 20
      kmers 124468 123767
      merge bubble 1
      contigs: 256 n50: 365 max: 1238 mean: 312 total length: 80098 n80: 267
      aligned 2264 reads
      confirmed bases: 17173 correct reads: 148 bases: 0
      distance mean 1000 sd 0
      seed contigs 205 local contigs 512
      kmer 40
      kmers 76005 75770
      merge bubble 0
      contigs: 189 n50: 394 max: 1309 mean: 389 total length: 73707 n80: 296
      aligned 2183 reads
      confirmed bases: 16747 correct reads: 149 bases: 0
      distance mean 1000 sd 0
      seed contigs 185 local contigs 378
      kmer 60
      kmers 64535 64344
      merge bubble 0
      contigs: 164 n50: 402 max: 1760 mean: 418 total length: 68694 n80: 310
      aligned 2046 reads
      confirmed bases: 15851 correct reads: 135 bases: 0
      distance mean 1000 sd 0
      seed contigs 164 local contigs 328
      kmer 80
      kmers 56030 55866
      merge bubble 0
      contigs: 149 n50: 414 max: 1760 mean: 434 total length: 64672 n80: 329
      aligned 1956 reads
      confirmed bases: 15274 correct reads: 133 bases: 0
      distance mean 1000 sd 0
      seed contigs 149 local contigs 298
      kmer 100
      kmers 49951 49802
      merge bubble 0
      contigs: 126 n50: 438 max: 1760 mean: 460 total length: 58038 n80: 349
      reads 5310
      aligned 1786 reads
      distance mean 1000 sd 0
      expected coverage 0.0384533
      

    Traceback:

    Job Parameters:

    • Job parameter Parameter value
      intype_cond {"__current_case__": 0, "intype_select": "rds", "output_abundances": false, "reads": {"values": [{"id": 113090951, "src": "hda"}]}, "reassembly": true}
      adv_cond {"__current_case__": 0, "adv_select": "no"}
      __job_resource {"__current_case__": 0, "__job_resource__select": "no"}
      chromInfo "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
      dbkey "?"
      __input_ext "fasta"
Passed s
  • ✅ toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2 (Test tool test #1)

    Command Line:

    Exit Code:

    • 0

    Standard Output:

    • MaxBin 2.2.7
      Input contig: /corral4/main/objects/e/5/0/dataset_e5065bcc-fb2c-4433-9450-9d8a93e8a5f9.dat
      out header: out
      Thread: 6
      Located reads file [/corral4/main/objects/a/8/a/dataset_a8acc970-104f-4395-ba76-033c28273aa6.dat]
      Running Bowtie2 on reads file [/corral4/main/objects/a/8/a/dataset_a8acc970-104f-4395-ba76-033c28273aa6.dat]...this may take a while...
      Reading SAM file to estimate abundance values...
      Searching against 107 marker genes to find starting seed contigs for [/corral4/main/objects/e/5/0/dataset_e5065bcc-fb2c-4433-9450-9d8a93e8a5f9.dat]...
      Running FragGeneScan....
      Running HMMER hmmsearch....
      Try harder to dig out marker genes from contigs.
      Done data collection. Running MaxBin...
      Command: /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.reads.abund1 -seed out.seed -out out -min_contig_length 1000 -thread 6
      Minimum contig length set to 1000.
      Reading seed list...
      Looking for seeds in sequences.
      	contig-201_2 [2.848706]
      	contig-201_100 [2.993483]
      Get 2 seeds.
      
      Start EM process.
      Iteration 1
      Iteration 2
      Iteration 3
      Iteration 4
      Iteration 5
      Iteration 6
      Iteration 7
      Iteration 8
      Iteration 9
      Iteration 10
      Iteration 11
      Iteration 12
      Iteration 13
      Iteration 14
      
      EM finishes successfully.
      
      Classifying sequences based on the EM result.
      Minimum probability for binning: 0.50
      Ignoring 0 bins without any sequences.
      Number of unclassified sequences: 0 (0.00%)
      Elapsed time:  0 days 00:00:00
      
      out.001.marker.fasta
      Deleting intermediate files.
      
      
      ========== Job finished ==========
      Yielded 2 bins for contig (scaffold) file /corral4/main/objects/e/5/0/dataset_e5065bcc-fb2c-4433-9450-9d8a93e8a5f9.dat
      
      Here are the output files for this run.
      Please refer to the README file for further details.
      
      Summary file: out.summary
      Marker counts: out.marker
      Marker genes for each bin: out.marker_of_each_gene.tar.gz
      Bin files: out.001.fasta - out.002.fasta
      Unbinned sequences: out.noclass
      
      Store abundance information of reads file [/corral4/main/objects/a/8/a/dataset_a8acc970-104f-4395-ba76-033c28273aa6.dat] in [out.abund1].
      
      
      ========== Elapsed Time ==========
      0 hours 0 minutes and 9 seconds.
      
      

    Traceback:

    Job Parameters:

    • Job parameter Parameter value
      intype_cond {"__current_case__": 0, "intype_select": "rds", "output_abundances": false, "reads": {"values": [{"id": 113090951, "src": "hda"}]}, "reassembly": false}
      adv_cond {"__current_case__": 0, "adv_select": "no"}
      __job_resource {"__current_case__": 0, "__job_resource__select": "no"}
      chromInfo "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
      dbkey "?"
      __input_ext "fasta"
  • ✅ toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2 (Test Test Prokka 1.14.6+galaxy1 #3)

    Command Line:

    Exit Code:

    • 0

    Standard Error:

    • Attaching package: 'gplots'
      
      The following object is masked from 'package:stats':
      
          lowess
      
      

    Standard Output:

    • MaxBin 2.2.7
      Input contig: /corral4/main/objects/e/5/0/dataset_e5065bcc-fb2c-4433-9450-9d8a93e8a5f9.dat
      out header: out
      Min contig length: 500
      Max iteration: 10
      Probability threshold: 0.95
      Thread: 6
      Located abundance file [/corral4/main/objects/6/4/9/dataset_649fc7be-31be-4bd6-897e-c364af739d7f.dat]
      Searching against 107 marker genes to find starting seed contigs for [/corral4/main/objects/e/5/0/dataset_e5065bcc-fb2c-4433-9450-9d8a93e8a5f9.dat]...
      Running FragGeneScan....
      Running HMMER hmmsearch....
      Try harder to dig out marker genes from contigs.
      Done data collection. Running MaxBin...
      Command: /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.abund1 -seed out.seed -out out -min_contig_length 500 -max_run 10 -prob_threshold 0.95 -thread 6
      Minimum contig length set to 500.
      Reading seed list...
      Looking for seeds in sequences.
      	contig-201_2 [11.293216]
      	contig-201_100 [10.048304]
      Get 2 seeds.
      
      Start EM process.
      Iteration 1
      Iteration 2
      Iteration 3
      Iteration 4
      Iteration 5
      Iteration 6
      Iteration 7
      Iteration 8
      Iteration 9
      Iteration 10
      
      EM finishes successfully.
      
      Classifying sequences based on the EM result.
      Minimum probability for binning: 0.95
      Ignoring 0 bins without any sequences.
      Number of unclassified sequences: 23 (9.75%)
      Elapsed time:  0 days 00:00:00
      
      Rscript /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/heatmap.r out.marker out.marker.pdf
      null device 
                1 
      out.001.marker.fasta
      Deleting intermediate files.
      
      
      ========== Job finished ==========
      Yielded 2 bins for contig (scaffold) file /corral4/main/objects/e/5/0/dataset_e5065bcc-fb2c-4433-9450-9d8a93e8a5f9.dat
      
      Here are the output files for this run.
      Please refer to the README file for further details.
      
      Summary file: out.summary
      Marker counts: out.marker
      Marker genes for each bin: out.marker_of_each_gene.tar.gz
      Bin files: out.001.fasta - out.002.fasta
      Unbinned sequences: out.noclass
      Marker plot: out.marker.pdf
      
      
      ========== Elapsed Time ==========
      0 hours 0 minutes and 5 seconds.
      
      

    Traceback:

    Job Parameters:

    • Job parameter Parameter value
      intype_cond {"__current_case__": 1, "abund": {"values": [{"id": 113090945, "src": "hda"}]}, "intype_select": "abdc"}
      adv_cond {"__current_case__": 1, "adv_select": "yes", "markerset": "107", "max_iteration": "10", "min_contig_length": "500", "output_log": false, "output_marker": false, "output_markers": false, "plotmarker": true, "prob_threshold": "0.95"}
      __job_resource {"__current_case__": 0, "__job_resource__select": "no"}
      chromInfo "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
      dbkey "?"
      __input_ext "fasta"

@mvdbeek
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mvdbeek commented Jun 12, 2023

Results (powered by Planemo)

Summary

State Count
Total 4
Passed 3
Error 0
Failure 1
Skipped 0
Failed s
  • ❌ toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2 (Test Test roary 3.13.0+galaxy2 #4)

    Problems:

    • Collection element 001 of collection reassembly_bins:  different than expected, difference (using diff):
      ( /tmp/tmphtpl83rmout.001.fasta v. /tmp/tmpgc4yifd0out.001.fasta )
      --- local_file
      +++ history_data
      @@ -1,49 +1,49 @@
       >scaffold_0
      -ATTGAAGGGGTTATCAGCCAGTTACAGGCTACGGCGATGAGTGCGCGTGCGCAGGAATCACTGCCGCAACCGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCTGCCCGCACGCAGGCAGAAAAATTCACTCTCGGTGAACCCGGCGTGGCGTTAAACGATGTGATGACCGATATGCAAAAAGCCTCAGTTTCTATGCAAATGGGGATTCAGGTGCGTAATAAGCTGGTGGCGGCGTATCAGGAAGTGATGAGCATGCAGGTGTAGGTTTTGTAACCTGTTGTTAATTACATCCGATCTCACCGCGTGGGGCATGGATGGGGCAAACTCACTCAATTTCTGGTTTAAAATGGATACCTGATCCTGAACGTTTTCTGCCATCCACGATCCGTATACGCGATAACCCCCCTGAACATCAGAGCGTCTCATTTGACACATCACCACGTCGGATGTTGTTACGACCACAGACGCAACAGTAACCTCTGGATAATTTAATCTTTGTTGATGTTTTTATTCATATTCCGGGCGATGGATATGAGCGATTTTTGATAGTGGTAATTTTATTGTGTTTTAGAATGCGCCCTGGGCAATATAATTTATTAAACAGGAGTGTAAATGTTTCCATTAAATGATCTTTCGTTAAAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGTATCTGATGATGCAATCATAAATGAATTATCAAGTGAGTTAGTCAGTTGTCTTGGAAATGGTAAGTTTACACCAATTAGTGAAGACAGCAAATTATTTAATATGCTGTCAGAATTTAAGTTATTGCACTCAGAATATTTCGAATGGGGTGATTATAGTCTCTGGTTTCAAGATTTCTCGATTTATAATAAGATAGGTTTTATCATGATAGAAAAAATCAGGGAACTGGTAACCCACCCATTCGGCATAAATTAGAGTTTATATCGACTAATATTGCAGAGTTTCTAGACAACTTTACGAAAATTACAGATTCCAGACTTTGCAAAGGTTTCAGCGACTGGGCTAATTCAGTAAAAGAAGGCGCATCGAATGACTTCAAAAAAAATGTGGATATAGCATTGGTGAGATTGTTTAAATGTGTTGAACTCCACAATAGTAAACTTGACTTAACAGATCTTCACTTGGGGTCTTTGCCACCTCTTCCATCCTGGATTGAGGTGCTTTATCTTCGTCATAATGGCCTTGCCACAATACAAATTCCCAAATTCTGCAAAGAATTAGAGCTCGATTTCAATAATTATATGGTATTTCCAAAAGTATCCGATGGAATTACCCAGGTCTCCGTAGATAATAATCTGATATCGCGTGTTGACTCATCTCCGTCAAAGGCTATGACAATTTCTATTTATCGCAATAAAATATGGTAAATACCAGCAATGCCTGAGACTACTAAGCTGTTTAATTGTGGCGATAATAAGATAAAAGAAATTCAATACTTCCCAAATCATCTGGAGAAAGCACGTATGGAGTGTGATATTGAGGTTGTCTCTGCGATATATAGCAATAAAGAATTACTTTTTAAAGAATGTAATTCTTTTGAAGAGACATTTTTATATCATGGACTTTGACAGGGATTTGCTATGAAAGATCGCAGCGAAAATATATTGTTACGAATCCCGCTGATTATGATAAATATTCCGATATGGTTAAAAAGTATGTAATAGATGGTGAGGAACTCATAATTAAATATTAAATGTAATTAATTAGGCGCAATTGTGTCACTGGAATAGAGGTTTCTTGTGGCGCATGTGGAAGGGGCGTCTATGGACAAGGCGTTTCCTGCTGGTGATAAATAAAG
      +CTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGACACAATTGCGCCTAATTAATTACATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGCTTAGTAGTCTCAGGCATTGCTGGTATTTACCATATTTTATTGCGATAAATAGAAATTGTCATAGCCTTTGACGGAGATGAGTCAACACGCGATATCAGATTATTATCTACGGAGACCTGGGTAATTCCATCGGATACTTTTGGAAATACCATATAATTATTGAAATCGAGCTCTAATTCTTTGCAGAATTTGGGAATTTGTATTGTGGCAAGGCCATTATGACGAAGATAAAGCACCTCAATCCAGGATGGAAGAGGTGGCAAAGACCCCAAGTGAAGATCTGTTAAGTCAAGTTTACTATTGTGGAGTTCAACACATTTAAACAATCTCACCAATGCTATATCCACATTTTTTTTGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCTGAGTGCAATAACTTAAATTCTGACAGCATATTAAATAATTTGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACTGGCTGATAACCCCTTCAAT
       >scaffold_1
      -CTGAATACGCTATACCACAAAAAGTGACGATTAGTATTGGCGCTGTTGTGACTCAGGAAAATGCGTTAAACCCAAATGAGATCTATCGACTGGCTGATAACGCACTTTACGAGGCGAAAGAGACCGGGCGTAATAAGGTGGTTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGACACAGGCCTAAGCGAGGTTCTTGTTTTCAAATTGTTCCGGACTGAGGCCGCCACACCAACTGTGCCGCCGCCACCGATTGTAATCACATTCGATATAATTAAACACCGTTGCCCGCATTATTTCCCGGCTGATAAAGTGTTCTCCATGGATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGCTGAACAGTACTGGCCTCCACGGTCCGTGTGAACGATAACGTTCCGGGGCCTCTTACGCCGCCACAGCGCCATCTGCAGGGCATCGCAGGCCAGTTGCGCCGTCATGCGTGGCGACATTGACCAGCCAATAACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCTGAACTTCCGGGAGGCCTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGTCGCAGTGTTGGCGGAACTGCTGACGCGTGCTTATCCTTGTCCGCCGCTGACACCACGTATACCAGCCGCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGAAGACGGCGTTCAGGCAATGCGCGATTATCTTGCCGGACTGGATATCGCTTCGCCAGAGCATCAGGTTCTGATGAACGTAACAGCAAAAAGCGAGGTCGCTCCGTCAATTATCAAAGAAAATCTCTCATTACACTTAACTCATACGGTGAAATGGACTGAATCTCTCGATACATTTCTGAATATGCCAACCCCGGTAGCTTTCCTTGAAATAAGTAATAAGCCCTATTTGGGGAATATGTTAAATGATTTTGCTGGCGTGG
      +CCACGCCAGCAAAATCATTTAACATATTCCCCAAATAGGGCTTATTACTTATTTCAAGGAAAGCTACCGGGGTTGGCATATTCAGAAATGTATCGAGAGATTCAGTCCATTTCACCGTATGAGTTAAGTGTAATGAGAGATTTTCTTTGATAATTGACGGAGCGACCTCGCTTTTTGCTGTTACGTTCATCAGAACCTGATGCTCTGGCGAAGCGATATCCAGTCCGGCAAGATAATCGCGCATTGCCTGAACGCCGTCTTCCATCAAACGCGTGTGCCAGGCACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTGGTGTCAGCGGCGGACAAGGATAAGCACGCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTGCGCCGTCAGGGACTGAGGGCAAAGGCCTCCCGGAAGTTCAGCCCGGTCAGCTACCGCGCACACGGCCTGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCGCCACGCATGACGGCGCAACTGGCCTGCGATGCCCTGCAGATGGCGCTGTGGCGGCGTAAGAGGCCCCGGAACGTTATCGTTCACACGGACCGTGGAGGCCAGTACTGTTCAGCAGATTATCAGGCGCAACTGAAGCGGCATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTTATCAGCCGGGAAATAATGCGGGCAACGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAAATGCCGCTTTATGGTGACTCACAAAAATTCACCACATCCCTCACAACCACCTTATTACGCCCGGTCTCTTTCGCCTCGTAAAGTGCGTTATCAGCCAGTCGATAGATCTCATTTGGGTTTAACGCATTTTCCTGAGTCACAACAGCGCCAATACTAATCGTCACTTTTTGTGGTATAGCGTATTCAG
       >scaffold_2
      -AAAGGCGCGTAACAGATTTAGAGGTGCTTTTGCTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTCGTTGACCAGAACTACACCGTGGCAGATGCAGCCAGCGCTATGGATGTCGGCCTTTCCACAATGACGCGATGGGTGAAACAATTACGTGATGAACGGCAGGGCAAAACACCAAAAGCCTCCCCCATTACCCCGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGCTGGTTTGTCAGCCAAAATGAGCATTCGTGCGATAGCTACTGCGCTGAATCGCAGTCCTTCGACGATCTCACGTGAAGTTCAGCGTAATCGGGGCAGACGCTATTACAAAGCTGTTGATGCTAATAACCGAGCCAACAGAATGGCGAAAAGGCCAAAACCGTGCTTACTGGATCAAAATTTACCATTGCGAAAGCTTGTTCTGGAAAAGCTGGAGATGAAATGGTCTCCAGAGCAAATATCAGGATGGTTAAGGCGAACAAAACCACGTCAAAAAACGCTGCGAATATCACCTGAGACAATTTATAAAACGCTGTACTTTCGTAGCCGTGAAGCGCTACACCACCTGAATATACAGCATCTGCGACGGTCGCATAGCCTTCGCCATGGCAGGCGTCATACCCGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTAGGGCATTGGGAGGGCGATTTAGTCTCAGGTACAAAAAACTCTCATATAGCCACACTTGTAGACCGAAAATCACGTTATACGATCATCCTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGGGGAACAAATGAGAACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAGTAGCCTTTTTAATATTTCATTCTCCATTTCAATCCGTTGTAGCTTTTTCCTCAGCTTACGTATTTCGATTTGTTCTGGTGTTATCGGAGAGGCTTTTGGTGT
      +AAAGGCGCGTAACAGATTTAGAGGTGCTTTTGCTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTCGTTGACCAGAACTACACCGTGGCAGATGCAGCCAGCGCTATGGATGTCGGCCTTTCCACAATGACGCGATGGGTGAAACAATTACGTGATGAACGGCAGGGCAAAACACCAAAAGCCTCCCCCATTACCCCGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGCTGGTTTGTCAGCCAAAATGAGCATTCGTGCGATAGCTACTGCGCTGAATCGCAGTCCTTCGACGATCTCACGTGAAGTTCAGCGTAATCGGGGCAGACGCTATTACAAAGCTGTTGATGCTAATAACCGAGCCAACAGAATGGCGAAAAGGCCAAAACCGTGCTTACTGGATCAAAATTTACCATTGCGAAAGCTTGTTCTGGAAAAGCTGGAGATGAAATGGTCTCCAGAGCAAATATCAGGATGGTTAAGGCGAACAAAACCACGTCAAAAAACGCTGCGAATATCACCTGAGACAATTTATAAAACGCTGTACTTTCGTAGCCGTGAAGCGCTACACCACCTGAATATACAGCATCTGCGACGGTCGCATAGCCTTCGCCATGGCAGGCGTCATACCCGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTAGGGCATTGGGAGGGCGATTTAGTCTCAGGTACAAAAAACTCTCATATAGCCACACTTGTAGACCGAAAATCACGTTATACGATCATCCTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAGTAGCCTTTTTAATATTTCATTCTCCATTTCAATCCGTTGTAGCTTTTTCCTCAGCTTACGTATTTCGATTTGTTCTGGTGTTATCGGAGAGGCTTTTGGTGT
       >scaffold_3
       GGAACTGAATTTCAAAGCTCGTATGGAATCCCCAAGCAAAGATGCCACCCCGGGCAACGTTTACGCTCAGGCTGACTACAAGATTGCTTACGAGTAATCGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTATTGCCCGGGGATGGGGAGTAAGCTTAGTCAGCCGTTGTCTCCGGGTGTCGCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGCAGAGTGGCCGTGAAAGAAAGCAATCAGCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCACGTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTCACTACCGGCGGCTTCAACAGTGAAACAGTACAGGACGTCATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTC
       >scaffold_4
      -ATGAATAGACAGCCAATATATTATTGCGATTAATAAGCAACCGAATGCCCAGCTGTTTTTTTAAAGGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGCCGCGACGACACATAATGCGCATCACCACGATGTCGGTGGCTTCACCGCCGAGAGTGAAGGCCGGAACCTGCCAGCCGCGCAGACGCAGACGTTCAGAGAGGTCATACAGGGTGTATCCCGGATCTTCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCGATTTCATCCGCCAGATAAGCGGCAACCTGGTAAGAGGCGTTCTGTACTTTGGTATAGCCTTCACGACCGAGGCGCAGGAATTCATAGTACTGTGCAATTACCTGACCCGCCGGGCGGGAGAAGTTGATGGCAAAAGTACCAATTTGACCACCCAGGTAGTCAACGTTGAACACCAGTTCCTGCGGCAGCGCTTCTTCGTCACGCCAGATAACCCAGCCGCAGCCCAGCGGAGCCAGACCGAATTTATGGCCTGAAGCACTGATCGATTTCACACGCGGCAGGCGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAATTTATCCAGCGCATCGTGCAGCGGTTGTGGGAACTCATAGTTACCAGTGTAGGTCACGCCGAAAGTCGGCACCACGCCGATGGTGTTTTCGTCACAGGCTTCAATCATGCGTTTCGGGTCCATAAACAACTGACCGGGGCGCATAGGGATCTCACGCAGCTCCACATCCCAGTAGCGGGCGAATTTATGCCAGCAGATTTGTACCGGACCGCACACCAGGTTTGGTTTATCCGTTGGTTTGCCTGCAGCTTCCATACGCTTGCGCCAACGCCATTTCATCGCCATCCCGCCGAGCATACAGGCCTCGGAAGAACCAATGGTGTTGGTGCCAACGGCCTGACCATTTTTCGGCGCAGGCGCATGCCACAGATCGGCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAATCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATAATTCGTCATTGATAATCTGGAATGCGACATCGTCGCGCATTTCGTGCAGCGGAAAACGTTTTGATTCTGCGATAGTGGAAATAGACTTCGCACCAAAACGTGAATCGAGTAGTTCTGAGCGGAAATCCGTTAACAGCTTCTGGTCCATTTCGAACTCCTTAAATTTATTTGAAGGCAATAAAAAAGTAGGATTTATCCGCAATGGAAGCAAGGCATTACAGGCTTAATTTAAATAACAAAATCCTAAGCAGAAAAACGACTTTTTATAATATAA
      +TTATATTATAAAAAGTCGTTTTTCTGCTTAGGATTTTGTTATTTAAATTAAGCCTGTAATGCCTTGCTTCCATTGCGGATAAATCCTACTTTTTTATTGCCTTCAAATAAATTTAAGGAGTTCGAAATGGACCAGAAGCTGTTAACGGATTTCCGCTCAGAACTACTCGATTCACGTTTTGGTGCGAAGTCTATTTCCACTATCGCAGAATCAAAACGTTTTCCGCTGCACGAAATGCGCGACGATGTCGCATTCCAGATTATCAATGACGAATTATATCTTGATGGCAACGCTCGTCAGAACCTGGCCACTTTCTGCCAGACCTGGGACGACGAAAATGTCCACAAATTGATGGATTTATCCATTAACAAAAACTGGATCGACAAAGAAGAATATCCGCAATCCGCAGCCATCGACCTGCGTTGCGTAAATATGGTTGCCGATCTGTGGCATGCGCCTGCGCCGAAAAATGGTCAGGCCGTTGGCACCAACACCATTGGTTCTTCCGAGGCCTGTATGCTCGGCGGGATGGCGATGAAATGGCGTTGGCGCAAGCGTATGGAAGCTGCAGGCAAACCAACGGATAAACCAAACCTGGTGTGCGGTCCGGTACAAATCTGCTGGCATAAATTCGCCCGCTACTGGGATGTGGAGCTGCGTGAGATCCCTATGCGCCCCGGTCAGTTGTTTATGGACCCGAAACGCATGATTGAAGCCTGTGACGAAAACACCATCGGCGTGGTGCCGACTTTCGGCGTGACCTACACTGGTAACTATGAGTTCCCACAACCGCTGCACGATGCGCTGGATAAATTCCAGGCCGATACCGGTATCGACATCGACATGCACATCGACGCTGCCAGCGGTGGCTTCCTGGCACCGTTCGTCGCCCCGGATATCGTCTGGGACTTCCGCCTGCCGCGTGTGAAATCGATCAGTGCTTCAGGCCATAAATTCGGTCTGGCTCCGCTGGGCTGCGGCTGGGTTATCTGGCGTGACGAAGAAGCGCTGCCGCAGGAACTGGTGTTCAACGTTGACTACCTGGGTGGTCAAATTGGTACTTTTGCCATCAACTTCTCCCGCCCGGCGGGTCAGGTAATTGCACAGTACTATGAATTCCTGCGCCTCGGTCGTGAAGGCTATACCAAAGTACAGAACGCCTCTTACCAGGTTGCCGCTTATCTGGCGGATGAAATCGCCAAACTGGGGCCGTATGAGTTCATCTGTACGGGTCGCCCGGACGAAGGCATCCCGGCGGTTTGCTTCAAACTGAAAGATGGTGAAGATCCGGGATACACCCTGTATGACCTCTCTGAACGTCTGCGTCTGCGCGGCTGGCAGGTTCCGGCCTTCACTCTCGGCGGTGAAGCCACCGACATCGTGGTGATGCGCATTATGTGTCGTCGCGGCTTCGAAATGGACTTTGCTGAACTGTTGCTGGAAGACTACAAAGCCTCCCTGAAATATCTCAGCGATCACCCGAAACTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTGCTTATTAATCGCAATAATATATTGGCTGTCTATTCAT
       >scaffold_5
       GACCTCATCGTTAGGTTGTGAATGAGAGTACGTTCACTTTTCTTCTGAACGTGAGATTAAGTGTAGTCAGCAATTTGGCTTAGGATTATTTATTCAGAATTTTTAACCGTCACGTTGCGGCAAACCAGGTACCATTGCGCCAGTGACGCCGCCAGATAGCCGCCAGAGAAAGCCCGCGCAACGCCAGAAAGACGGTTAATGCCAGCCACAAAGCATGATTACCCAGCCACGGCAGCGTAAGGAGCGTCAGCGCAAAACCTGCGGCGGCCACCGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATAACACCAGACGCCAACCACCGGCAAAATCACCTGCCAGATAAGATAGCGGTCAGCCAGCTGCTGAATCTGGGTTAACGACGTCAGTAACGCAATGATGTGTTCCCCAGCCAGCAAATAAACCACCGAAAACAGTAACGCTACGATCCCCGACTGGCGGCACGCTGCCCGCCAGACATCCAGCAACTGGCTACCGTCGCGCGCACCGTATGCCTGACCGGAGTGCGCTTCAACCGCGTAGGCAAAACCATCCAGCGCATAGGCGGTAAAGGTGAGTAGCGTCATCAGAACCGCGTTAACAGCGATAATGTCACTCCCCAGTCGCGCGCCAAGTACGGTGATCGCGCCGAAACAGAGTTGCAACAACAGCGAACGCAGCATGATATCGCGGTTAAGCGCCAGCAAGCGACGGAAGTTTCCTCGCCAGGCAGTTTTCAGCATTTCGCCGGAAATTCCGCGTAGTTTGAGGATTTTACGCACCATTAGCAGACCAATCAGCAATGTTGCATATTCCGCAATAACCGTCGCCAGCGCCGCGCCCTGCACGTTCATATGCAGCCCCATCACCAGCCAGACATCCAGCACAATGTTGAGGATATTGCCGACCACTAACAAAATTACTGGCGCACGGGCATATTGCACGCCGAGTAACCAACCGAGTAATACCAGATTCGCCAGCGACGCCGGTGCGCTTAACCAGCGGATTTCAAGAAAGCGCCGCGCCTGTTCCAGGACTGCCTCACTACCGCCAACAATATGCAGCGCCAGATCGATAATCGGCGTACGCAGCAGCGCAATTAACGCCCCAGCCCCCAACGCCAACAGCAACGGTTGCACCAGCGTACGGGCTAATGCCTGAGGATTTTTGGCACCATAAGCCTGCGCAGTCAGCCCGGTGGTGCTCATGCGTAAAAACAGCAACAGCATAAAGAGAAAGCTGGTCGCCGTTGCACCAACCGCCACGCCGCCCAAATAAACCGGGCTATCAAGATGACCAATTACCGCCGTATCGACCAGTCCCAGCAACGGAACGGTGATATTGGAGAAAATCATGGGTAAGGCGAGATGCCAGAGTGCTTTATCAGATGAAGTGAGGAATGCCATGCAGACAAGCCTGATGAAGAGAGATGAAAAACAAACCGCGACGCCAGGCGGCATCGCGGTCTCAGAGATATGTTACAGCCAGTCGCCGTTGCGAATAACCCCAACCGCCAGCCCTTCAATGGTGAAGCTCTGCTGACGAAGGTCAACGACAATTGGTTTA
       >scaffold_6
       GAACGGCATGTTTGGTGCGTGTCTGATGGGTAATGCGCAGCTGGTTGCCGACTGCGTGAAAGCGATGCGCGATGTGGTGTCGATTCCGGTGACGGTGAAAACGCGTATTGGCATCGACGACCAGGACAGCTATGAATTTCTCTGCGATTTCATCAATACCGTTTCCGGCAAAGGCGAGTGTGAGATGTTCATCATCCACGCACGTAAAGCCTGGCTTTCGGGGTTAAGCCCGAAAGAAAACCGTGAAATCCCGCCGCTCGATTATCCGCGTGTGTATCAACTGAAGCGTGACTTTCCGCATCTGACAATGTCGATTAACGGTGGTATCAAGTCGCTGGAAGAGGCCAAAGCACACCTGCAACATATGGATGGCGTGATGGTCGGGCGCGAGGCGTATCAGAATCCGGGTATTCTGGCGGCGGTAGACCGGGAGATCTTTGGTTCCTCGGATACCGATGCCGATCCGGTGGCGGTAGTGCGCGCCATGTATCCGTACATTGAGCGTGAACTCAGCCAGGGGACGTATCTCGGCCATATTACCCGGCATATGTTGGGCTTGTTCCAGGGTATTCCTGGCGCGCGGCAGTGGCGGCGTTATTTAAGTGAAAATGCCCATAAAGCGGGTGCAGACATTAATGTGCTGGAACACGCGCTCAAACTGGTGGCGGATAAGCGTTAACTTTTCACCAAAAAGTAGTCAAATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGGTGGTGTGGGTTATTAAGGCGATTAAAGCACCAAAAGTGCCGAAATATCAGCGTTATGACCGCTGGCGTTACTAAGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTG
       >scaffold_7
      -AACTGCTGAATGCGCTGTCACAGGCTTCTTATATTCATGTACGTGAAGGTCGTGGGGCGATTAACTTCTCCCGCTTCAACCAGGCCTACATGATGCATGCCACCACCTCCCCGCTGTATGCCATCTGCGCATCCAACGACGTGGCGGTGTCGATGATGGACGGCAACAGCGGCCTGTCACTGACACAGGAAGTGATTGACGAAGCGGTTGATTTCCGTCAGGCGATGGCGCGGCTATATAAAGAGTTCACCGCTGACGGTAGCTGGTTCTTCAAACCGTGGAACAAAGAAGTCGTCACCGACCCACAAACCGGCAAACCTATGACTTTGCTGACGCACCAACCAAACTGCTGACCACCGTTCAGGACTGCTGGGTAATGCATCCGGGCGAAAGCTGGCACGGCTTCAAAGATATTCCGGATAACTGGAGTATGCTCGACCCGATTAAAGTCAGCATCCTTGCTCCGGGAATGGGTGAAGATGGTGAACTGGAAGAAACCGGTGTTCCGGCGGCGCTGGTCACTGCCTGGCTTGGTCGCCACGGCATTGTACCTACCCGCACCACTGACTTCCAAATTATGTTCCTGTTCTCTATGGGCGTAACCCGTGGGAAATGGGGAACTCTGGTTAACACCCTTTGCTCCTTCAAACGCCACTATGACGCCAACACACCGCTGGCGCAGGTGATGCCGGAACTTGTTGAACAATATCCTGACACTTACGCGAACATGGGGATTCACGATCTGGGTGACACCATGTTTGCCTGGCTGAAAGAAAACAACCCTGGCGCACGGTTGAACGAAGCCTATTCCGGCCTGCCGGTGGCGGAAGTCACCCCGCGTGAAGCGTACAACGCGATTGTCGACAACAATGTCGAACTGGTATCCATTGAAAATCTGCCAGGACGCATCGCGGCAAACTCAGTTATCCCGTATCCGCCAGGAATCCCGATGCTGCTGTCTGGTGAAAACTTCGGCGATAAAAACAGTCCGCAAGTAAGTTATTTACGCTCGCTGCAATCCTGGGACCACCATTTCCCTGGATTTGAACACGAAACTGAAGGGACTGAAATTATTGACGGTATTTACCACGTTATGTGCGTGAAAGCGTAACCACTATTCCGCTGAAGGCGTAATTGTTTAAATAACATTACGCCGCCTGGCCTTAGGCCTTTTGAGTATGGCAACGTTTTCATAAAAATTGCTGCAAACAAAAATGTCATACTTTTTGCGCGGCCCCACCCCGCGCTTTTTTTTGCCTGTTATTTATCCTGTAAAAAAATATGTACATGAGAAATTACTATAAAAATTTGTACTATTAGTAAAACTCGTTATTTTTATGCATGTTTATATTCATCATACAATTATATAACCATTTCCCGGTATCGCTTTGCTTTAGCGAGAACTGGTCTTTTATTCGCACTCAGGAGTACATGTATGAGGATTTGCAGCGACCAACCTTGTATTGTTTTATTGACTGAAAAAGATGTCTGGATAAGGGTGAATGGG
      +CCCATTCACCCTTATCCAGACATCTTTTTCAGTCAATAAAACAATACAAGGTTGGTCGCTGCAAATCCTCATACATGTACTCCTGAGTGCGAATAAAAGACCAGTTCTCGCTAAAGCAAAGCGATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGTGGTAAATACCGTCAATAATTTCAGTCCCTTCAGTTTCGTGTTCAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCGGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAGGCCGGAATAGGCTTCGTTCAACCGTGCGCCAGGGTTGTTTTCTTTCAGCCAGGCAAACATGGTGTCACCCAGATCGTGAATCCCCATGTTCGCGTAAGTGTCAGGATATTGTTCAACAAGTTCCGGCATCACCTGCGCCAGCGGTGTGTTGGCGTCATAGTGGCGTTTGAAGGAGCAAAGGGTGTTAACCAGAGTTCCCCATTTCCCACGGGTTACGCCCATAGAGAACAGGAACATAATTTGGAAGTCAGTGGTGCGGGTAGGTACAATGCCGTGGCGACCAAGCCAGGCAGTGACCAGCGCCGCCGGAACACCGGTTTCTTCCAGTTCACCATCTTCACCCATTCCCGGAGCAAGGATGCTGACTTTAATCGGGTCGAGCATACTCCAGTTATCCGGAATATCTTTGAAGCCGTGCCAGCTTTCGCCCGGATGCATTACCCAGCAGTCCTGAACGGTGGTCAGCAGTTTGGTTGGTGCGTCAGCAAAGTCATAGGTTTGCCGGTTTGTGGGTCGGTGACGACTTCTTTGTTCCACGGTTTGAAGAACCAGCTACCGTCAGCGGTGAACTCTTTATATAGCCGCGCCATCGCCTGACGGAAATCAACCGCTTCGTCAATCACTTCCTGTGTCAGTGACAGGCCGCTGTTGCCGTCCATCATCGACACCGCCACGTCGTTGGATGCGCAGATGGCATACAGCGGGGAGGTGGTGGCATGCATCATGTAGGCCTGGTTGAAGCGGGAGAAGTTAATCGCCCCACGACCTTCACGTACATGAATATAAGAAGCCTGTGACAGCGCATTCAGCAGTT
       >scaffold_8
      ********
      *SNIP *
      ********
       >scaffold_516
      -TATGAGCGAATGCTGCGCGGTGATGTGAAATATCGTTTTGTTATCGATAATCGCACACTAACAGACTGAAAAAATTAATAAATACCCTGTGGTTTAACATATTAACTTCGCTCTCCACTTAACTTTTTAGTTAAGGAGAGCGAAATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAATACTTCACACGTTAGTTATGAGCGATTTCTGATAGTGCCTGGTTTAATCAGAGCTTTATTATCTGCGACGTTTATTTTTATTTAAGA
      +TCTTAAATAAAAATAAACGTCGCAGATAATAAAGCTCTGATTAAACCAGGCACTATCAGAAATCGCTCATAACTAACGTGTGAAGTATTGTGTACTGGAGGGCGTTAATTTAACAATTTAAATTTACGTTATAGGTTTTACTGCTACTTTGATATTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCGAAGTTAATATGTTAAACCACAGGGTATTTATTAATTTTTTCAGTCTGTTAGTGTGCGATTATCGATAACAAAACGATATTTCACATCACCGCGCAGCATTCGCTCATA
       >scaffold_517
       GCAAACCCTTTTGGTATCCACAACTGCTGCTTATTATCAGCTGAAAGCAGAACACCAACCCATTTACCAAAGGATACCGAATTGGGTCGAATATCAACAGCAACATCAAAAACTGCTCCATGAGTGCAGCGTACAAGTTTATCTTGTGCGTACTCGCCGCGTTGAAAGTGAAGGCCTCTGAGTACATTTTTTGATGAACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATA
       >scaffold_518
      -GCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTATAAGATACCTTAACCCATTTTATTATTACACATCTAAAACATCACAAAAAAAATCACTTCACACACTATCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAA
      +TTTTATCTCCACCCGGTAATATTTGTGTGTAAAAAAAGGGTAGTGATAGTATCGTAAAGGAAATCGTTAACAACTATCAAAATGCGCTCATTTTAAAAAGTTATTATGTTCTCTGATAGTGTGTGAAGTGATTTTTTTTGTGATGTTTTAGATGTGTAATAATAAAATGGGTTAAGGTATCTTATAATTATTTAATAATTTGTTGTGTAAACCACTGATAAATCATAATCCAGTACGTCTTTAAACTACTGCGCTGTATCGCTGATAACTAAGCAGCTCACTGATACACCATGCTGGACGC
       >scaffold_519
      +TTCCATACAATTACCGCACATCCGATAGTATGTCACAGAAATGTGAAACAAAAGTGTAAGGCGAAGATCGGATGATCTTCGCCAGGCTATCAAGCGCGTTGACTGTCTTTCATCAACAAAGCGGTCATTGCGGAAATCAGGCATCCAGCCAGCAAATAAATGGCGACGCTATGCCAGTTCCCGGCAAAGTAAGTGATGAGTGCAGCGGCAATAAAAGGTGTAAATCCACCGCCAACCACACTGGCAACCTGATAACCGACTCCAGCGCCACTATAGCGATAACTGGCACCAAACATTTCG
      +>scaffold_520
       GGCGGTAATAACGGCTTCTTCCTGCTGAGTTTTCATCAGGTTGATAATTTCGGCTGCCGTTCTCACGCCGCCCATTTTGCTGCGCTTGAGATTCTGACCGTCGAGCAAGCCATTCAGTACTTCGGTCAGCTCCGCCAGCGCGGCTGGCTGCACGCCGCCAAAGGTGGCGATACGCAACATCACGTCGTGGCGCAGACGTTCATCGAACAACGCCAGAATATCGGCGGCTTGGGCGCGCTTCAGATGCACCAGAATGGTGGCGATAATTTGCGGATGCTCATCGCGAATCAGATCGGCGGC
      ->scaffold_520
      -TTCCATACAATTACCGCACATCCGATAGTATGTCACAGAAATGTGAAACAAAAGTGTAAGGCGAAGATCGGATGATCTTCGCCAGGCTATCAAGCGCGTTGACTGTCTTTCATCAACAAAGCGGTCATTGCGGAAATCAGGCATCCAGCCAGCAAATAAATGGCGACGCTATGCCAGTTCCCGGCAAAGTAAGTGATGAGTGCAGCGGCAATAAAAGGTGTAAATCCACCGCCAACCACACTGGCAACCTGATAACCGACTCCAGCGCCACTATAGCGATAACTGGCACCAAACATTTCG
       >scaffold_521
      -TAAGGCGGCGGCAATGAGCATCAATATAATGATGGGTGCGGAAGGCGAGGTTTTTGCCCACGTCAGGCCGTTGAGCGATCCGGCATTCCACAAACCTGCTGTTAGCGCCGTTTCTAAAGACGCTTTCAGCAACAGCCAGGTATTAAAGGCCACCAGCATGGCGCGAACGCCGATACCGATAATAATCAACCGAAAGGTGTCGATGCCGTTGCGCCAGGCGAGCAGCCAGACCAGCAGCGAAGTGACAATGCCGCCCACCATTGCTGACAGCGCGATAGCCGTCAGGTCCTGACCAAACA
      +TGTTTGGTCAGGACCTGACGGCTATCGCGCTGTCAGCAATGGTGGGCGGCATTGTCACTTCGCTGCTGGTCTGGCTGCTCGCCTGGCGCAACGGCATCGACACCTTTCGGTTGATTATTATCGGTATCGGCGTTCGCGCCATGCTGGTGGCCTTTAATACCTGGCTGTTGCTGAAAGCGTCTTTAGAAACGGCGCTAACAGCAGGTTTGTGGAATGCCGGATCGCTCAACGGCCTGACGTGGGCAAAAACCTCGCCTTCCGCACCCATCATTATATTGATGCTCATTGCCGCCGCCTTA
       >scaffold_522
       GTTTAACGGTAACGGTGTCCCGAAACGAACCCGTTTCGGGACAATTTCCAAAGTCTGTTCACTGGCATTAGCAACGGAAAATATTGTTCTGAATACGCTTCAGAACAAAACAGGTGCGGTTCCGACAGGAATACCGTTTTAGGGGGATAATATGGCTACATCAGTACAGACAGGTAAAGCTAAGCAGCTCACATTACTTGGATTCTTTGCCATAACGGCATCGATGGTAATGGCTGTTTATGAATACCCTACCTTCGCAACATCGGGCTTTTCATTAGTCTTCTTCCTGCTATTAGGCG
       >scaffold_523
      -ATTTCCTGAAGAGCCTCTGGATGTGGTCATTGGAAGAGCGGACCGGGCAATGTATGAGGGTAAGCAAACCGGAAGAAATCGCTGCATGTTTATTGACGAACAAAATGTGATTAACCGAGTTTAAGCTCCGTTTAACATTCATTGAGAAAACTGATGCTACTGTGTCAACGATTCGTTATCAGTGCAGGAAAATGCCTGTTAGCGTAAAAGCAAAACACAAATCTATCCATGCAAGCATTCACCGCCGGTTTACTGGCGGTTTTTTTTCGCCGTCATAAAAATCAGGCCCCTTGTACACA
      +GATCATGTTATCAGGGTGGGGCGGTAGCGTATATTCCTTATACAAACCATCATTCATTTCAATGATTGTTATTGAATTATTTATTGTTGTGAATAAAAAGACATTATGAATATTGGTTTGACTTTGCATATCAGGTTTTTTATTACTCGCTGTAATGTACGAGCCTGTCGTGAATAACGTCGAGAACCCATCCGTTGCGTTTGTGATTATTTTGTTGACTAAACAGACACCCGTTTCTCTGAAGTAAAATCCCAGACAAATCATCACATAACCATGACATTTTTCTGATATTCCCCGGT
       >scaffold_524
      -ACCGGGGAATATCAGAAAAATGTCATGGTTATGTGATGATTTGTCTGGGATTTTACTTCAGAGAAACGGGTGTCTGTTTAGTCAACAAAATAATCACAAACGCAACGGATGGGTTCTCGACGTTATTCACGACAGGCTCGTACATTACAGCGAGTAATAAAAAACCTGATATGCAAAGTCAAACCAATATTCATAATGTCTTTTTATTCACAACAATAAATAATTCAATAACAATCATTGAAATGAATGATGGTTTGTATAAGGAATATACGCTACCGCCCCACCCTGATAACATGATC
      +TGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCTTAAACTCGGTTAATCACATTTTGTTCGTCAATAAACATGCAGCGATTTCTTCCGGTTTGCTTACCCTCATACATTGCCCGGTCCGCTCTTCCAATGACCACATCCAGAGGCTCTTCAGGAAAT
      
      

    Command Line:

    Exit Code:

    • 0

    Standard Error:

    • ==== MaxBin2 stderr ====
      sh: line 1:  3583 Segmentation fault      (core dumped) idba_ud -r out.reads.002 -o out.tmp --pre_correction --num_threads 6 > out.idba.out 2> out.idba.err
      ==== IDBA stderr ====
      

    Standard Output:

    • ==== MaxBin2 stdout ====
      MaxBin 2.2.7
      Input contig: /corral4/main/objects/c/a/e/dataset_cae3f88f-aecd-49bd-8b23-bdf1d5de6826.dat
      out header: out
      Reassembly: 1
      Thread: 6
      Located reads file [/corral4/main/objects/4/b/f/dataset_4bfa1bf8-6371-4608-a58c-116d8b0c4ee0.dat]
      Running Bowtie2 on reads file [/corral4/main/objects/4/b/f/dataset_4bfa1bf8-6371-4608-a58c-116d8b0c4ee0.dat]...this may take a while...
      Reading SAM file to estimate abundance values...
      Searching against 107 marker genes to find starting seed contigs for [/corral4/main/objects/c/a/e/dataset_cae3f88f-aecd-49bd-8b23-bdf1d5de6826.dat]...
      Running FragGeneScan....
      Running HMMER hmmsearch....
      Try harder to dig out marker genes from contigs.
      Done data collection. Running MaxBin...
      Command: /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.reads.abund1 -seed out.seed -out out -min_contig_length 1000 -thread 6
      Minimum contig length set to 1000.
      Reading seed list...
      Looking for seeds in sequences.
      	contig-201_2 [2.848706]
      	contig-201_100 [2.993483]
      Get 2 seeds.
      
      Start EM process.
      Iteration 1
      Iteration 2
      Iteration 3
      Iteration 4
      Iteration 5
      Iteration 6
      Iteration 7
      Iteration 8
      Iteration 9
      Iteration 10
      Iteration 11
      Iteration 12
      Iteration 13
      Iteration 14
      
      EM finishes successfully.
      
      Classifying sequences based on the EM result.
      Minimum probability for binning: 0.50
      Ignoring 0 bins without any sequences.
      Number of unclassified sequences: 0 (0.00%)
      Elapsed time:  0 days 00:00:00
      
      Performing reassembly. Reads file found.
      Separating reads according to the bins...
      Reading sam file out.sam0...
      Reading reads file /corral4/main/objects/4/b/f/dataset_4bfa1bf8-6371-4608-a58c-116d8b0c4ee0.dat...
      Reassembling bin 001
      Command: idba_ud -r out.reads.001 -o out.tmp --pre_correction --num_threads 6 1>out.idba.out 2>out.idba.err
      Placing reassembled contigs into out.reassem
      cp out.tmp/scaffold.fa out.reassem/out.001.fasta
      Reassembling bin 002
      Command: idba_ud -r out.reads.002 -o out.tmp --pre_correction --num_threads 6 1>out.idba.out 2>out.idba.err
      Placing reassembled contigs into out.reassem
      cp out.tmp/scaffold.fa out.reassem/out.002.fasta
      out.001.marker.fasta
      Deleting intermediate files.
      
      
      ========== Job finished ==========
      Yielded 2 bins for contig (scaffold) file /corral4/main/objects/c/a/e/dataset_cae3f88f-aecd-49bd-8b23-bdf1d5de6826.dat
      
      Here are the output files for this run.
      Please refer to the README file for further details.
      
      Summary file: out.summary
      Marker counts: out.marker
      Marker genes for each bin: out.marker_of_each_gene.tar.gz
      Bin files: out.001.fasta - out.002.fasta
      Unbinned sequences: out.noclass
      
      Store abundance information of reads file [/corral4/main/objects/4/b/f/dataset_4bfa1bf8-6371-4608-a58c-116d8b0c4ee0.dat] in [out.abund1].
      
      
      ========== Elapsed Time ==========
      0 hours 0 minutes and 17 seconds.
      
      ==== IDBA stdout ====
      number of threads 6
      reads 5310
      long reads 0
      extra reads 0
      read_length 93
      kmer 60
      kmers 50115 49096
      merge bubble 0
      contigs: 11 n50: 297 max: 440 mean: 308 total length: 3388 n80: 262
      aligned 118 reads
      confirmed bases: 1314 correct reads: 22 bases: 0
      kmer 20
      kmers 124468 123767
      merge bubble 1
      contigs: 256 n50: 365 max: 1238 mean: 312 total length: 80098 n80: 267
      aligned 2264 reads
      confirmed bases: 17173 correct reads: 148 bases: 0
      distance mean 1000 sd 0
      seed contigs 205 local contigs 512
      kmer 40
      kmers 76005 75770
      merge bubble 0
      contigs: 187 n50: 394 max: 1309 mean: 394 total length: 73706 n80: 296
      aligned 2184 reads
      confirmed bases: 16748 correct reads: 149 bases: 0
      distance mean 1000 sd 0
      seed contigs 185 local contigs 374
      kmer 60
      kmers 64636 64445
      merge bubble 0
      contigs: 164 n50: 402 max: 1760 mean: 419 total length: 68753 n80: 314
      aligned 2047 reads
      confirmed bases: 15851 correct reads: 135 bases: 0
      distance mean 1000 sd 0
      seed contigs 164 local contigs 328
      kmer 80
      kmers 56089 55925
      merge bubble 0
      contigs: 149 n50: 414 max: 1760 mean: 434 total length: 64731 n80: 330
      aligned 1957 reads
      confirmed bases: 15272 correct reads: 133 bases: 0
      distance mean 1000 sd 0
      seed contigs 149 local contigs 298
      kmer 100
      kmers 50010 49861
      merge bubble 0
      contigs: 126 n50: 438 max: 1760 mean: 461 total length: 58097 n80: 350
      reads 5310
      aligned 1787 reads
      distance mean 1000 sd 0
      expected coverage 0.038426
      

    Traceback:

    Job Parameters:

    • Job parameter Parameter value
      intype_cond {"__current_case__": 0, "intype_select": "rds", "output_abundances": false, "reads": {"values": [{"id": 113091006, "src": "hda"}]}, "reassembly": true}
      adv_cond {"__current_case__": 0, "adv_select": "no"}
      __job_resource {"__current_case__": 0, "__job_resource__select": "no"}
      chromInfo "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
      dbkey "?"
      __input_ext "fasta"
Passed s
  • ✅ toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2 (Test tool test #1)

    Command Line:

    Exit Code:

    • 0

    Standard Output:

    • MaxBin 2.2.7
      Input contig: /corral4/main/objects/c/a/e/dataset_cae3f88f-aecd-49bd-8b23-bdf1d5de6826.dat
      out header: out
      Thread: 6
      Located reads file [/corral4/main/objects/4/b/f/dataset_4bfa1bf8-6371-4608-a58c-116d8b0c4ee0.dat]
      Running Bowtie2 on reads file [/corral4/main/objects/4/b/f/dataset_4bfa1bf8-6371-4608-a58c-116d8b0c4ee0.dat]...this may take a while...
      Reading SAM file to estimate abundance values...
      Searching against 107 marker genes to find starting seed contigs for [/corral4/main/objects/c/a/e/dataset_cae3f88f-aecd-49bd-8b23-bdf1d5de6826.dat]...
      Running FragGeneScan....
      Running HMMER hmmsearch....
      Try harder to dig out marker genes from contigs.
      Done data collection. Running MaxBin...
      Command: /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.reads.abund1 -seed out.seed -out out -min_contig_length 1000 -thread 6
      Minimum contig length set to 1000.
      Reading seed list...
      Looking for seeds in sequences.
      	contig-201_2 [2.848706]
      	contig-201_100 [2.993483]
      Get 2 seeds.
      
      Start EM process.
      Iteration 1
      Iteration 2
      Iteration 3
      Iteration 4
      Iteration 5
      Iteration 6
      Iteration 7
      Iteration 8
      Iteration 9
      Iteration 10
      Iteration 11
      Iteration 12
      Iteration 13
      Iteration 14
      
      EM finishes successfully.
      
      Classifying sequences based on the EM result.
      Minimum probability for binning: 0.50
      Ignoring 0 bins without any sequences.
      Number of unclassified sequences: 0 (0.00%)
      Elapsed time:  0 days 00:00:00
      
      out.001.marker.fasta
      Deleting intermediate files.
      
      
      ========== Job finished ==========
      Yielded 2 bins for contig (scaffold) file /corral4/main/objects/c/a/e/dataset_cae3f88f-aecd-49bd-8b23-bdf1d5de6826.dat
      
      Here are the output files for this run.
      Please refer to the README file for further details.
      
      Summary file: out.summary
      Marker counts: out.marker
      Marker genes for each bin: out.marker_of_each_gene.tar.gz
      Bin files: out.001.fasta - out.002.fasta
      Unbinned sequences: out.noclass
      
      Store abundance information of reads file [/corral4/main/objects/4/b/f/dataset_4bfa1bf8-6371-4608-a58c-116d8b0c4ee0.dat] in [out.abund1].
      
      
      ========== Elapsed Time ==========
      0 hours 0 minutes and 9 seconds.
      
      

    Traceback:

    Job Parameters:

    • Job parameter Parameter value
      intype_cond {"__current_case__": 0, "intype_select": "rds", "output_abundances": false, "reads": {"values": [{"id": 113091006, "src": "hda"}]}, "reassembly": false}
      adv_cond {"__current_case__": 0, "adv_select": "no"}
      __job_resource {"__current_case__": 0, "__job_resource__select": "no"}
      chromInfo "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
      dbkey "?"
      __input_ext "fasta"
  • ✅ toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2 (Test test against test.galaxyproject.org #2)

    Command Line:

    Exit Code:

    • 0

    Standard Error:

    • Attaching package: 'gplots'
      
      The following object is masked from 'package:stats':
      
          lowess
      
      

    Standard Output:

    • MaxBin 2.2.7
      Input contig: /corral4/main/objects/c/a/e/dataset_cae3f88f-aecd-49bd-8b23-bdf1d5de6826.dat
      out header: out
      Min contig length: 1000
      Max iteration: 50
      Probability threshold: 0.5
      Thread: 6
      Located reads file [/corral4/main/objects/4/b/f/dataset_4bfa1bf8-6371-4608-a58c-116d8b0c4ee0.dat]
      Running Bowtie2 on reads file [/corral4/main/objects/4/b/f/dataset_4bfa1bf8-6371-4608-a58c-116d8b0c4ee0.dat]...this may take a while...
      Reading SAM file to estimate abundance values...
      Searching against 107 marker genes to find starting seed contigs for [/corral4/main/objects/c/a/e/dataset_cae3f88f-aecd-49bd-8b23-bdf1d5de6826.dat]...
      Running FragGeneScan....
      Running HMMER hmmsearch....
      Try harder to dig out marker genes from contigs.
      Done data collection. Running MaxBin...
      Command: /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.reads.abund1 -seed out.seed -out out -min_contig_length 1000 -max_run 50 -prob_threshold 0.5 -thread 6
      Minimum contig length set to 1000.
      Reading seed list...
      Looking for seeds in sequences.
      	contig-201_2 [2.848706]
      	contig-201_100 [2.993483]
      Get 2 seeds.
      
      Start EM process.
      Iteration 1
      Iteration 2
      Iteration 3
      Iteration 4
      Iteration 5
      Iteration 6
      Iteration 7
      Iteration 8
      Iteration 9
      Iteration 10
      Iteration 11
      Iteration 12
      Iteration 13
      Iteration 14
      
      EM finishes successfully.
      
      Classifying sequences based on the EM result.
      Minimum probability for binning: 0.50
      Ignoring 0 bins without any sequences.
      Number of unclassified sequences: 0 (0.00%)
      Elapsed time:  0 days 00:00:01
      
      Rscript /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/heatmap.r out.marker out.marker.pdf
      null device 
                1 
      out.001.marker.fasta
      Deleting intermediate files.
      
      
      ========== Job finished ==========
      Yielded 2 bins for contig (scaffold) file /corral4/main/objects/c/a/e/dataset_cae3f88f-aecd-49bd-8b23-bdf1d5de6826.dat
      
      Here are the output files for this run.
      Please refer to the README file for further details.
      
      Summary file: out.summary
      Marker counts: out.marker
      Marker genes for each bin: out.marker_of_each_gene.tar.gz
      Bin files: out.001.fasta - out.002.fasta
      Unbinned sequences: out.noclass
      Marker plot: out.marker.pdf
      
      Store abundance information of reads file [/corral4/main/objects/4/b/f/dataset_4bfa1bf8-6371-4608-a58c-116d8b0c4ee0.dat] in [out.abund1].
      
      
      ========== Elapsed Time ==========
      0 hours 0 minutes and 6 seconds.
      
      

    Traceback:

    Job Parameters:

    • Job parameter Parameter value
      intype_cond {"__current_case__": 0, "intype_select": "rds", "output_abundances": true, "reads": {"values": [{"id": 113091006, "src": "hda"}]}, "reassembly": false}
      adv_cond {"__current_case__": 1, "adv_select": "yes", "markerset": "107", "max_iteration": "50", "min_contig_length": "1000", "output_log": true, "output_marker": true, "output_markers": true, "plotmarker": true, "prob_threshold": "0.5"}
      __job_resource {"__current_case__": 0, "__job_resource__select": "no"}
      chromInfo "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
      dbkey "?"
      __input_ext "fasta"
  • ✅ toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2 (Test Test Prokka 1.14.6+galaxy1 #3)

    Command Line:

    Exit Code:

    • 0

    Standard Error:

    • Attaching package: 'gplots'
      
      The following object is masked from 'package:stats':
      
          lowess
      
      

    Standard Output:

    • MaxBin 2.2.7
      Input contig: /corral4/main/objects/c/a/e/dataset_cae3f88f-aecd-49bd-8b23-bdf1d5de6826.dat
      out header: out
      Min contig length: 500
      Max iteration: 10
      Probability threshold: 0.95
      Thread: 6
      Located abundance file [/corral4/main/objects/5/5/0/dataset_5509b561-57f2-432a-870a-b727bcf5edf6.dat]
      Searching against 107 marker genes to find starting seed contigs for [/corral4/main/objects/c/a/e/dataset_cae3f88f-aecd-49bd-8b23-bdf1d5de6826.dat]...
      Running FragGeneScan....
      Running HMMER hmmsearch....
      Try harder to dig out marker genes from contigs.
      Done data collection. Running MaxBin...
      Command: /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.abund1 -seed out.seed -out out -min_contig_length 500 -max_run 10 -prob_threshold 0.95 -thread 6
      Minimum contig length set to 500.
      Reading seed list...
      Looking for seeds in sequences.
      	contig-201_2 [11.293216]
      	contig-201_100 [10.048304]
      Get 2 seeds.
      
      Start EM process.
      Iteration 1
      Iteration 2
      Iteration 3
      Iteration 4
      Iteration 5
      Iteration 6
      Iteration 7
      Iteration 8
      Iteration 9
      Iteration 10
      
      EM finishes successfully.
      
      Classifying sequences based on the EM result.
      Minimum probability for binning: 0.95
      Ignoring 0 bins without any sequences.
      Number of unclassified sequences: 23 (9.75%)
      Elapsed time:  0 days 00:00:00
      
      Rscript /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/heatmap.r out.marker out.marker.pdf
      null device 
                1 
      out.001.marker.fasta
      Deleting intermediate files.
      
      
      ========== Job finished ==========
      Yielded 2 bins for contig (scaffold) file /corral4/main/objects/c/a/e/dataset_cae3f88f-aecd-49bd-8b23-bdf1d5de6826.dat
      
      Here are the output files for this run.
      Please refer to the README file for further details.
      
      Summary file: out.summary
      Marker counts: out.marker
      Marker genes for each bin: out.marker_of_each_gene.tar.gz
      Bin files: out.001.fasta - out.002.fasta
      Unbinned sequences: out.noclass
      Marker plot: out.marker.pdf
      
      
      ========== Elapsed Time ==========
      0 hours 0 minutes and 14 seconds.
      
      

    Traceback:

    Job Parameters:

    • Job parameter Parameter value
      intype_cond {"__current_case__": 1, "abund": {"values": [{"id": 113091003, "src": "hda"}]}, "intype_select": "abdc"}
      adv_cond {"__current_case__": 1, "adv_select": "yes", "markerset": "107", "max_iteration": "10", "min_contig_length": "500", "output_log": false, "output_marker": false, "output_markers": false, "plotmarker": true, "prob_threshold": "0.95"}
      __job_resource {"__current_case__": 0, "__job_resource__select": "no"}
      chromInfo "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
      dbkey "?"
      __input_ext "fasta"

@jennaj
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jennaj commented Jun 17, 2023

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2/2.2.7+galaxy2

@mvdbeek
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mvdbeek commented Jun 17, 2023

Results (powered by Planemo)

Summary

State Count
Total 4
Passed 3
Error 0
Failure 1
Skipped 0
Failed s
  • ❌ toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2 (Test Test roary 3.13.0+galaxy2 #4)

    Problems:

    • Collection element 001 of collection reassembly_bins:  different than expected, difference (using diff):
      ( /tmp/tmpa_oipkiyout.001.fasta v. /tmp/tmp0xx027sxout.001.fasta )
      --- local_file
      +++ history_data
      @@ -1,29 +1,29 @@
       >scaffold_0
      -ATTGAAGGGGTTATCAGCCAGTTACAGGCTACGGCGATGAGTGCGCGTGCGCAGGAATCACTGCCGCAACCGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCTGCCCGCACGCAGGCAGAAAAATTCACTCTCGGTGAACCCGGCGTGGCGTTAAACGATGTGATGACCGATATGCAAAAAGCCTCAGTTTCTATGCAAATGGGGATTCAGGTGCGTAATAAGCTGGTGGCGGCGTATCAGGAAGTGATGAGCATGCAGGTGTAGGTTTTGTAACCTGTTGTTAATTACATCCGATCTCACCGCGTGGGGCATGGATGGGGCAAACTCACTCAATTTCTGGTTTAAAATGGATACCTGATCCTGAACGTTTTCTGCCATCCACGATCCGTATACGCGATAACCCCCCTGAACATCAGAGCGTCTCATTTGACACATCACCACGTCGGATGTTGTTACGACCACAGACGCAACAGTAACCTCTGGATAATTTAATCTTTGTTGATGTTTTTATTCATATTCCGGGCGATGGATATGAGCGATTTTTGATAGTGGTAATTTTATTGTGTTTTAGAATGCGCCCTGGGCAATATAATTTATTAAACAGGAGTGTAAATGTTTCCATTAAATGATCTTTCGTTAAAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGTATCTGATGATGCAATCATAAATGAATTATCAAGTGAGTTAGTCAGTTGTCTTGGAAATGGTAAGTTTACACCAATTAGTGAAGACAGCAAATTATTTAATATGCTGTCAGAATTTAAGTTATTGCACTCAGAATATTTCGAATGGGGTGATTATAGTCTCTGGTTTCAAGATTTCTCGATTTATAATAAGATAGGTTTTATCATGATAGAAAAAATCAGGGAACTGGTAACCCACCCATTCGGCATAAATTAGAGTTTATATCGACTAATATTGCAGAGTTTCTAGACAACTTTACGAAAATTACAGATTCCAGACTTTGCAAAGGTTTCAGCGACTGGGCTAATTCAGTAAAAGAAGGCGCATCGAATGACTTCAAAAAAAATGTGGATATAGCATTGGTGAGATTGTTTAAATGTGTTGAACTCCACAATAGTAAACTTGACTTAACAGATCTTCACTTGGGGTCTTTGCCACCTCTTCCATCCTGGATTGAGGTGCTTTATCTTCGTCATAATGGCCTTGCCACAATACAAATTCCCAAATTCTGCAAAGAATTAGAGCTCGATTTCAATAATTATATGGTATTTCCAAAAGTATCCGATGGAATTACCCAGGTCTCCGTAGATAATAATCTGATATCGCGTGTTGACTCATCTCCGTCAAAGGCTATGACAATTTCTATTTATCGCAATAAAATATGGTAAATACCAGCAATGCCTGAGACTACTAAGCTGTTTAATTGTGGCGATAATAAGATAAAAGAAATTCAATACTTCCCAAATCATCTGGAGAAAGCACGTATGGAGTGTGATATTGAGGTTGTCTCTGCGATATATAGCAATAAAGAATTACTTTTTAAAGAATGTAATTCTTTTGAAGAGACATTTTTATATCATGGACTTTGACAGGGATTTGCTATGAAAGATCGCAGCGAAAATATATTGTTACGAATCCCGCTGATTATGATAAATATTCCGATATGGTTAAAAAGTATGTAATAGATGGTGAGGAACTCATAATTAAATATTAAATGTAATTAATTAGGCGCAATTGTGTCACTGGAATAGAGGTTTCTTGTGGCGCATGTGGAAGGGGCGTCTATGGACAAGGCGTTTCCTGCTGGTGATAAATAAAG
      +CTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGACACAATTGCGCCTAATTAATTACATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGCTTAGTAGTCTCAGGCATTGCTGGTATTTACCATATTTTATTGCGATAAATAGAAATTGTCATAGCCTTTGACGGAGATGAGTCAACACGCGATATCAGATTATTATCTACGGAGACCTGGGTAATTCCATCGGATACTTTTGGAAATACCATATAATTATTGAAATCGAGCTCTAATTCTTTGCAGAATTTGGGAATTTGTATTGTGGCAAGGCCATTATGACGAAGATAAAGCACCTCAATCCAGGATGGAAGAGGTGGCAAAGACCCCAAGTGAAGATCTGTTAAGTCAAGTTTACTATTGTGGAGTTCAACACATTTAAACAATCTCACCAATGCTATATCCACATTTTTTTTGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCTGAGTGCAATAACTTAAATTCTGACAGCATATTAAATAATTTGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACTGGCTGATAACCCCTTCAAT
       >scaffold_1
      -CTGAATACGCTATACCACAAAAAGTGACGATTAGTATTGGCGCTGTTGTGACTCAGGAAAATGCGTTAAACCCAAATGAGATCTATCGACTGGCTGATAACGCACTTTACGAGGCGAAAGAGACCGGGCGTAATAAGGTGGTTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGACACAGGCCTAAGCGAGGTTCTTGTTTTCAAATTGTTCCGGACTGAGGCCGCCACACCAACTGTGCCGCCGCCACCGATTGTAATCACATTCGATATAATTAAACACCGTTGCCCGCATTATTTCCCGGCTGATAAAGTGTTCTCCATGGATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGCTGAACAGTACTGGCCTCCACGGTCCGTGTGAACGATAACGTTCCGGGGCCTCTTACGCCGCCACAGCGCCATCTGCAGGGCATCGCAGGCCAGTTGCGCCGTCATGCGTGGCGACATTGACCAGCCAATAACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCTGAACTTCCGGGAGGCCTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGTCGCAGTGTTGGCGGAACTGCTGACGCGTGCTTATCCTTGTCCGCCGCTGACACCACGTATACCAGCCGCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGAAGACGGCGTTCAGGCAATGCGCGATTATCTTGCCGGACTGGATATCGCTTCGCCAGAGCATCAGGTTCTGATGAACGTAACAGCAAAAAGCGAGGTCGCTCCGTCAATTATCAAAGAAAATCTCTCATTACACTTAACTCATACGGTGAAATGGACTGAATCTCTCGATACATTTCTGAATATGCCAACCCCGGTAGCTTTCCTTGAAATAAGTAATAAGCCCTATTTGGGGAATATGTTAAATGATTTTGCTGGCGTGG
      +CCACGCCAGCAAAATCATTTAACATATTCCCCAAATAGGGCTTATTACTTATTTCAAGGAAAGCTACCGGGGTTGGCATATTCAGAAATGTATCGAGAGATTCAGTCCATTTCACCGTATGAGTTAAGTGTAATGAGAGATTTTCTTTGATAATTGACGGAGCGACCTCGCTTTTTGCTGTTACGTTCATCAGAACCTGATGCTCTGGCGAAGCGATATCCAGTCCGGCAAGATAATCGCGCATTGCCTGAACGCCGTCTTCCATCAAACGCGTGTGCCAGGCACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTGGTGTCAGCGGCGGACAAGGATAAGCACGCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTGCGCCGTCAGGGACTGAGGGCAAAGGCCTCCCGGAAGTTCAGCCCGGTCAGCTACCGCGCACACGGCCTGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCGCCACGCATGACGGCGCAACTGGCCTGCGATGCCCTGCAGATGGCGCTGTGGCGGCGTAAGAGGCCCCGGAACGTTATCGTTCACACGGACCGTGGAGGCCAGTACTGTTCAGCAGATTATCAGGCGCAACTGAAGCGGCATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTTATCAGCCGGGAAATAATGCGGGCAACGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAAATGCCGCTTTATGGTGACTCACAAAAATTCACCACATCCCTCACAACCACCTTATTACGCCCGGTCTCTTTCGCCTCGTAAAGTGCGTTATCAGCCAGTCGATAGATCTCATTTGGGTTTAACGCATTTTCCTGAGTCACAACAGCGCCAATACTAATCGTCACTTTTTGTGGTATAGCGTATTCAG
       >scaffold_2
      -AAAGGCGCGTAACAGATTTAGAGGTGCTTTTGCTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTCGTTGACCAGAACTACACCGTGGCAGATGCAGCCAGCGCTATGGATGTCGGCCTTTCCACAATGACGCGATGGGTGAAACAATTACGTGATGAACGGCAGGGCAAAACACCAAAAGCCTCCCCCATTACCCCGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGCTGGTTTGTCAGCCAAAATGAGCATTCGTGCGATAGCTACTGCGCTGAATCGCAGTCCTTCGACGATCTCACGTGAAGTTCAGCGTAATCGGGGCAGACGCTATTACAAAGCTGTTGATGCTAATAACCGAGCCAACAGAATGGCGAAAAGGCCAAAACCGTGCTTACTGGATCAAAATTTACCATTGCGAAAGCTTGTTCTGGAAAAGCTGGAGATGAAATGGTCTCCAGAGCAAATATCAGGATGGTTAAGGCGAACAAAACCACGTCAAAAAACGCTGCGAATATCACCTGAGACAATTTATAAAACGCTGTACTTTCGTAGCCGTGAAGCGCTACACCACCTGAATATACAGCATCTGCGACGGTCGCATAGCCTTCGCCATGGCAGGCGTCATACCCGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTAGGGCATTGGGAGGGCGATTTAGTCTCAGGTACAAAAAACTCTCATATAGCCACACTTGTAGACCGAAAATCACGTTATACGATCATCCTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGGGGAACAAATGAGAACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAGTAGCCTTTTTAATATTTCATTCTCCATTTCAATCCGTTGTAGCTTTTTCCTCAGCTTACGTATTTCGATTTGTTCTGGTGTTATCGGAGAGGCTTTTGGTGT
      +AAAGGCGCGTAACAGATTTAGAGGTGCTTTTGCTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTCGTTGACCAGAACTACACCGTGGCAGATGCAGCCAGCGCTATGGATGTCGGCCTTTCCACAATGACGCGATGGGTGAAACAATTACGTGATGAACGGCAGGGCAAAACACCAAAAGCCTCCCCCATTACCCCGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGCTGGTTTGTCAGCCAAAATGAGCATTCGTGCGATAGCTACTGCGCTGAATCGCAGTCCTTCGACGATCTCACGTGAAGTTCAGCGTAATCGGGGCAGACGCTATTACAAAGCTGTTGATGCTAATAACCGAGCCAACAGAATGGCGAAAAGGCCAAAACCGTGCTTACTGGATCAAAATTTACCATTGCGAAAGCTTGTTCTGGAAAAGCTGGAGATGAAATGGTCTCCAGAGCAAATATCAGGATGGTTAAGGCGAACAAAACCACGTCAAAAAACGCTGCGAATATCACCTGAGACAATTTATAAAACGCTGTACTTTCGTAGCCGTGAAGCGCTACACCACCTGAATATACAGCATCTGCGACGGTCGCATAGCCTTCGCCATGGCAGGCGTCATACCCGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTAGGGCATTGGGAGGGCGATTTAGTCTCAGGTACAAAAAACTCTCATATAGCCACACTTGTAGACCGAAAATCACGTTATACGATCATCCTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAGTAGCCTTTTTAATATTTCATTCTCCATTTCAATCCGTTGTAGCTTTTTCCTCAGCTTACGTATTTCGATTTGTTCTGGTGTTATCGGAGAGGCTTTTGGTGT
       >scaffold_3
       GGAACTGAATTTCAAAGCTCGTATGGAATCCCCAAGCAAAGATGCCACCCCGGGCAACGTTTACGCTCAGGCTGACTACAAGATTGCTTACGAGTAATCGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTATTGCCCGGGGATGGGGAGTAAGCTTAGTCAGCCGTTGTCTCCGGGTGTCGCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGCAGAGTGGCCGTGAAAGAAAGCAATCAGCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCACGTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTCACTACCGGCGGCTTCAACAGTGAAACAGTACAGGACGTCATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTC
       >scaffold_4
      -ATGAATAGACAGCCAATATATTATTGCGATTAATAAGCAACCGAATGCCCAGCTGTTTTTTTAAAGGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGCCGCGACGACACATAATGCGCATCACCACGATGTCGGTGGCTTCACCGCCGAGAGTGAAGGCCGGAACCTGCCAGCCGCGCAGACGCAGACGTTCAGAGAGGTCATACAGGGTGTATCCCGGATCTTCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCGATTTCATCCGCCAGATAAGCGGCAACCTGGTAAGAGGCGTTCTGTACTTTGGTATAGCCTTCACGACCGAGGCGCAGGAATTCATAGTACTGTGCAATTACCTGACCCGCCGGGCGGGAGAAGTTGATGGCAAAAGTACCAATTTGACCACCCAGGTAGTCAACGTTGAACACCAGTTCCTGCGGCAGCGCTTCTTCGTCACGCCAGATAACCCAGCCGCAGCCCAGCGGAGCCAGACCGAATTTATGGCCTGAAGCACTGATCGATTTCACACGCGGCAGGCGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAATTTATCCAGCGCATCGTGCAGCGGTTGTGGGAACTCATAGTTACCAGTGTAGGTCACGCCGAAAGTCGGCACCACGCCGATGGTGTTTTCGTCACAGGCTTCAATCATGCGTTTCGGGTCCATAAACAACTGACCGGGGCGCATAGGGATCTCACGCAGCTCCACATCCCAGTAGCGGGCGAATTTATGCCAGCAGATTTGTACCGGACCGCACACCAGGTTTGGTTTATCCGTTGGTTTGCCTGCAGCTTCCATACGCTTGCGCCAACGCCATTTCATCGCCATCCCGCCGAGCATACAGGCCTCGGAAGAACCAATGGTGTTGGTGCCAACGGCCTGACCATTTTTCGGCGCAGGCGCATGCCACAGATCGGCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAATCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATAATTCGTCATTGATAATCTGGAATGCGACATCGTCGCGCATTTCGTGCAGCGGAAAACGTTTTGATTCTGCGATAGTGGAAATAGACTTCGCACCAAAACGTGAATCGAGTAGTTCTGAGCGGAAATCCGTTAACAGCTTCTGGTCCATTTCGAACTCCTTAAATTTATTTGAAGGCAATAAAAAAGTAGGATTTATCCGCAATGGAAGCAAGGCATTACAGGCTTAATTTAAATAACAAAATCCTAAGCAGAAAAACGACTTTTTATAATATAA
      +TTATATTATAAAAAGTCGTTTTTCTGCTTAGGATTTTGTTATTTAAATTAAGCCTGTAATGCCTTGCTTCCATTGCGGATAAATCCTACTTTTTTATTGCCTTCAAATAAATTTAAGGAGTTCGAAATGGACCAGAAGCTGTTAACGGATTTCCGCTCAGAACTACTCGATTCACGTTTTGGTGCGAAGTCTATTTCCACTATCGCAGAATCAAAACGTTTTCCGCTGCACGAAATGCGCGACGATGTCGCATTCCAGATTATCAATGACGAATTATATCTTGATGGCAACGCTCGTCAGAACCTGGCCACTTTCTGCCAGACCTGGGACGACGAAAATGTCCACAAATTGATGGATTTATCCATTAACAAAAACTGGATCGACAAAGAAGAATATCCGCAATCCGCAGCCATCGACCTGCGTTGCGTAAATATGGTTGCCGATCTGTGGCATGCGCCTGCGCCGAAAAATGGTCAGGCCGTTGGCACCAACACCATTGGTTCTTCCGAGGCCTGTATGCTCGGCGGGATGGCGATGAAATGGCGTTGGCGCAAGCGTATGGAAGCTGCAGGCAAACCAACGGATAAACCAAACCTGGTGTGCGGTCCGGTACAAATCTGCTGGCATAAATTCGCCCGCTACTGGGATGTGGAGCTGCGTGAGATCCCTATGCGCCCCGGTCAGTTGTTTATGGACCCGAAACGCATGATTGAAGCCTGTGACGAAAACACCATCGGCGTGGTGCCGACTTTCGGCGTGACCTACACTGGTAACTATGAGTTCCCACAACCGCTGCACGATGCGCTGGATAAATTCCAGGCCGATACCGGTATCGACATCGACATGCACATCGACGCTGCCAGCGGTGGCTTCCTGGCACCGTTCGTCGCCCCGGATATCGTCTGGGACTTCCGCCTGCCGCGTGTGAAATCGATCAGTGCTTCAGGCCATAAATTCGGTCTGGCTCCGCTGGGCTGCGGCTGGGTTATCTGGCGTGACGAAGAAGCGCTGCCGCAGGAACTGGTGTTCAACGTTGACTACCTGGGTGGTCAAATTGGTACTTTTGCCATCAACTTCTCCCGCCCGGCGGGTCAGGTAATTGCACAGTACTATGAATTCCTGCGCCTCGGTCGTGAAGGCTATACCAAAGTACAGAACGCCTCTTACCAGGTTGCCGCTTATCTGGCGGATGAAATCGCCAAACTGGGGCCGTATGAGTTCATCTGTACGGGTCGCCCGGACGAAGGCATCCCGGCGGTTTGCTTCAAACTGAAAGATGGTGAAGATCCGGGATACACCCTGTATGACCTCTCTGAACGTCTGCGTCTGCGCGGCTGGCAGGTTCCGGCCTTCACTCTCGGCGGTGAAGCCACCGACATCGTGGTGATGCGCATTATGTGTCGTCGCGGCTTCGAAATGGACTTTGCTGAACTGTTGCTGGAAGACTACAAAGCCTCCCTGAAATATCTCAGCGATCACCCGAAACTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTGCTTATTAATCGCAATAATATATTGGCTGTCTATTCAT
       >scaffold_5
       GACCTCATCGTTAGGTTGTGAATGAGAGTACGTTCACTTTTCTTCTGAACGTGAGATTAAGTGTAGTCAGCAATTTGGCTTAGGATTATTTATTCAGAATTTTTAACCGTCACGTTGCGGCAAACCAGGTACCATTGCGCCAGTGACGCCGCCAGATAGCCGCCAGAGAAAGCCCGCGCAACGCCAGAAAGACGGTTAATGCCAGCCACAAAGCATGATTACCCAGCCACGGCAGCGTAAGGAGCGTCAGCGCAAAACCTGCGGCGGCCACCGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATAACACCAGACGCCAACCACCGGCAAAATCACCTGCCAGATAAGATAGCGGTCAGCCAGCTGCTGAATCTGGGTTAACGACGTCAGTAACGCAATGATGTGTTCCCCAGCCAGCAAATAAACCACCGAAAACAGTAACGCTACGATCCCCGACTGGCGGCACGCTGCCCGCCAGACATCCAGCAACTGGCTACCGTCGCGCGCACCGTATGCCTGACCGGAGTGCGCTTCAACCGCGTAGGCAAAACCATCCAGCGCATAGGCGGTAAAGGTGAGTAGCGTCATCAGAACCGCGTTAACAGCGATAATGTCACTCCCCAGTCGCGCGCCAAGTACGGTGATCGCGCCGAAACAGAGTTGCAACAACAGCGAACGCAGCATGATATCGCGGTTAAGCGCCAGCAAGCGACGGAAGTTTCCTCGCCAGGCAGTTTTCAGCATTTCGCCGGAAATTCCGCGTAGTTTGAGGATTTTACGCACCATTAGCAGACCAATCAGCAATGTTGCATATTCCGCAATAACCGTCGCCAGCGCCGCGCCCTGCACGTTCATATGCAGCCCCATCACCAGCCAGACATCCAGCACAATGTTGAGGATATTGCCGACCACTAACAAAATTACTGGCGCACGGGCATATTGCACGCCGAGTAACCAACCGAGTAATACCAGATTCGCCAGCGACGCCGGTGCGCTTAACCAGCGGATTTCAAGAAAGCGCCGCGCCTGTTCCAGGACTGCCTCACTACCGCCAACAATATGCAGCGCCAGATCGATAATCGGCGTACGCAGCAGCGCAATTAACGCCCCAGCCCCCAACGCCAACAGCAACGGTTGCACCAGCGTACGGGCTAATGCCTGAGGATTTTTGGCACCATAAGCCTGCGCAGTCAGCCCGGTGGTGCTCATGCGTAAAAACAGCAACAGCATAAAGAGAAAGCTGGTCGCCGTTGCACCAACCGCCACGCCGCCCAAATAAACCGGGCTATCAAGATGACCAATTACCGCCGTATCGACCAGTCCCAGCAACGGAACGGTGATATTGGAGAAAATCATGGGTAAGGCGAGATGCCAGAGTGCTTTATCAGATGAAGTGAGGAATGCCATGCAGACAAGCCTGATGAAGAGAGATGAAAAACAAACCGCGACGCCAGGCGGCATCGCGGTCTCAGAGATATGTTACAGCCAGTCGCCGTTGCGAATAACCCCAACCGCCAGCCCTTCAATGGTGAAGCTCTGCTGACGAAGGTCAACGACAATTGGTTTA
       >scaffold_6
       GAACGGCATGTTTGGTGCGTGTCTGATGGGTAATGCGCAGCTGGTTGCCGACTGCGTGAAAGCGATGCGCGATGTGGTGTCGATTCCGGTGACGGTGAAAACGCGTATTGGCATCGACGACCAGGACAGCTATGAATTTCTCTGCGATTTCATCAATACCGTTTCCGGCAAAGGCGAGTGTGAGATGTTCATCATCCACGCACGTAAAGCCTGGCTTTCGGGGTTAAGCCCGAAAGAAAACCGTGAAATCCCGCCGCTCGATTATCCGCGTGTGTATCAACTGAAGCGTGACTTTCCGCATCTGACAATGTCGATTAACGGTGGTATCAAGTCGCTGGAAGAGGCCAAAGCACACCTGCAACATATGGATGGCGTGATGGTCGGGCGCGAGGCGTATCAGAATCCGGGTATTCTGGCGGCGGTAGACCGGGAGATCTTTGGTTCCTCGGATACCGATGCCGATCCGGTGGCGGTAGTGCGCGCCATGTATCCGTACATTGAGCGTGAACTCAGCCAGGGGACGTATCTCGGCCATATTACCCGGCATATGTTGGGCTTGTTCCAGGGTATTCCTGGCGCGCGGCAGTGGCGGCGTTATTTAAGTGAAAATGCCCATAAAGCGGGTGCAGACATTAATGTGCTGGAACACGCGCTCAAACTGGTGGCGGATAAGCGTTAACTTTTCACCAAAAAGTAGTCAAATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGGTGGTGTGGGTTATTAAGGCGATTAAAGCACCAAAAGTGCCGAAATATCAGCGTTATGACCGCTGGCGTTACTAAGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTG
       >scaffold_7
      -AACTGCTGAATGCGCTGTCACAGGCTTCTTATATTCATGTACGTGAAGGTCGTGGGGCGATTAACTTCTCCCGCTTCAACCAGGCCTACATGATGCATGCCACCACCTCCCCGCTGTATGCCATCTGCGCATCCAACGACGTGGCGGTGTCGATGATGGACGGCAACAGCGGCCTGTCACTGACACAGGAAGTGATTGACGAAGCGGTTGATTTCCGTCAGGCGATGGCGCGGCTATATAAAGAGTTCACCGCTGACGGTAGCTGGTTCTTCAAACCGTGGAACAAAGAAGTCGTCACCGACCCACAAACCGGCAAACCTATGACTTTGCTGACGCACCAACCAAACTGCTGACCACCGTTCAGGACTGCTGGGTAATGCATCCGGGCGAAAGCTGGCACGGCTTCAAAGATATTCCGGATAACTGGAGTATGCTCGACCCGATTAAAGTCAGCATCCTTGCTCCGGGAATGGGTGAAGATGGTGAACTGGAAGAAACCGGTGTTCCGGCGGCGCTGGTCACTGCCTGGCTTGGTCGCCACGGCATTGTACCTACCCGCACCACTGACTTCCAAATTATGTTCCTGTTCTCTATGGGCGTAACCCGTGGGAAATGGGGAACTCTGGTTAACACCCTTTGCTCCTTCAAACGCCACTATGACGCCAACACACCGCTGGCGCAGGTGATGCCGGAACTTGTTGAACAATATCCTGACACTTACGCGAACATGGGGATTCACGATCTGGGTGACACCATGTTTGCCTGGCTGAAAGAAAACAACCCTGGCGCACGGTTGAACGAAGCCTATTCCGGCCTGCCGGTGGCGGAAGTCACCCCGCGTGAAGCGTACAACGCGATTGTCGACAACAATGTCGAACTGGTATCCATTGAAAATCTGCCAGGACGCATCGCGGCAAACTCAGTTATCCCGTATCCGCCAGGAATCCCGATGCTGCTGTCTGGTGAAAACTTCGGCGATAAAAACAGTCCGCAAGTAAGTTATTTACGCTCGCTGCAATCCTGGGACCACCATTTCCCTGGATTTGAACACGAAACTGAAGGGACTGAAATTATTGACGGTATTTACCACGTTATGTGCGTGAAAGCGTAACCACTATTCCGCTGAAGGCGTAATTGTTTAAATAACATTACGCCGCCTGGCCTTAGGCCTTTTGAGTATGGCAACGTTTTCATAAAAATTGCTGCAAACAAAAATGTCATACTTTTTGCGCGGCCCCACCCCGCGCTTTTTTTTGCCTGTTATTTATCCTGTAAAAAAATATGTACATGAGAAATTACTATAAAAATTTGTACTATTAGTAAAACTCGTTATTTTTATGCATGTTTATATTCATCATACAATTATATAACCATTTCCCGGTATCGCTTTGCTTTAGCGAGAACTGGTCTTTTATTCGCACTCAGGAGTACATGTATGAGGATTTGCAGCGACCAACCTTGTATTGTTTTATTGACTGAAAAAGATGTCTGGATAAGGGTGAATGGG
      +CCCATTCACCCTTATCCAGACATCTTTTTCAGTCAATAAAACAATACAAGGTTGGTCGCTGCAAATCCTCATACATGTACTCCTGAGTGCGAATAAAAGACCAGTTCTCGCTAAAGCAAAGCGATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGTGGTAAATACCGTCAATAATTTCAGTCCCTTCAGTTTCGTGTTCAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCGGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAGGCCGGAATAGGCTTCGTTCAACCGTGCGCCAGGGTTGTTTTCTTTCAGCCAGGCAAACATGGTGTCACCCAGATCGTGAATCCCCATGTTCGCGTAAGTGTCAGGATATTGTTCAACAAGTTCCGGCATCACCTGCGCCAGCGGTGTGTTGGCGTCATAGTGGCGTTTGAAGGAGCAAAGGGTGTTAACCAGAGTTCCCCATTTCCCACGGGTTACGCCCATAGAGAACAGGAACATAATTTGGAAGTCAGTGGTGCGGGTAGGTACAATGCCGTGGCGACCAAGCCAGGCAGTGACCAGCGCCGCCGGAACACCGGTTTCTTCCAGTTCACCATCTTCACCCATTCCCGGAGCAAGGATGCTGACTTTAATCGGGTCGAGCATACTCCAGTTATCCGGAATATCTTTGAAGCCGTGCCAGCTTTCGCCCGGATGCATTACCCAGCAGTCCTGAACGGTGGTCAGCAGTTTGGTTGGTGCGTCAGCAAAGTCATAGGTTTGCCGGTTTGTGGGTCGGTGACGACTTCTTTGTTCCACGGTTTGAAGAACCAGCTACCGTCAGCGGTGAACTCTTTATATAGCCGCGCCATCGCCTGACGGAAATCAACCGCTTCGTCAATCACTTCCTGTGTCAGTGACAGGCCGCTGTTGCCGTCCATCATCGACACCGCCACGTCGTTGGATGCGCAGATGGCATACAGCGGGGAGGTGGTGGCATGCATCATGTAGGCCTGGTTGAAGCGGGAGAAGTTAATCGCCCCACGACCTTCACGTACATGAATATAAGAAGCCTGTGACAGCGCATTCAGCAGTT
       >scaffold_8
      ********
      *SNIP *
      ********
      ->scaffold_516
      -TATGAGCGAATGCTGCGCGGTGATGTGAAATATCGTTTTGTTATCGATAATCGCACACTAACAGACTGAAAAAATTAATAAATACCCTGTGGTTTAACATATTAACTTCGCTCTCCACTTAACTTTTTAGTTAAGGAGAGCGAAATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAATACTTCACACGTTAGTTATGAGCGATTTCTGATAGTGCCTGGTTTAATCAGAGCTTTATTATCTGCGACGTTTATTTTTATTTAAGA
       >scaffold_517
       GCAAACCCTTTTGGTATCCACAACTGCTGCTTATTATCAGCTGAAAGCAGAACACCAACCCATTTACCAAAGGATACCGAATTGGGTCGAATATCAACAGCAACATCAAAAACTGCTCCATGAGTGCAGCGTACAAGTTTATCTTGTGCGTACTCGCCGCGTTGAAAGTGAAGGCCTCTGAGTACATTTTTTGATGAACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATA
       >scaffold_518
      -GCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTATAAGATACCTTAACCCATTTTATTATTACACATCTAAAACATCACAAAAAAAATCACTTCACACACTATCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAA
      +TTTTATCTCCACCCGGTAATATTTGTGTGTAAAAAAAGGGTAGTGATAGTATCGTAAAGGAAATCGTTAACAACTATCAAAATGCGCTCATTTTAAAAAGTTATTATGTTCTCTGATAGTGTGTGAAGTGATTTTTTTTGTGATGTTTTAGATGTGTAATAATAAAATGGGTTAAGGTATCTTATAATTATTTAATAATTTGTTGTGTAAACCACTGATAAATCATAATCCAGTACGTCTTTAAACTACTGCGCTGTATCGCTGATAACTAAGCAGCTCACTGATACACCATGCTGGACGC
       >scaffold_519
      +TTCCATACAATTACCGCACATCCGATAGTATGTCACAGAAATGTGAAACAAAAGTGTAAGGCGAAGATCGGATGATCTTCGCCAGGCTATCAAGCGCGTTGACTGTCTTTCATCAACAAAGCGGTCATTGCGGAAATCAGGCATCCAGCCAGCAAATAAATGGCGACGCTATGCCAGTTCCCGGCAAAGTAAGTGATGAGTGCAGCGGCAATAAAAGGTGTAAATCCACCGCCAACCACACTGGCAACCTGATAACCGACTCCAGCGCCACTATAGCGATAACTGGCACCAAACATTTCG
      +>scaffold_520
       GGCGGTAATAACGGCTTCTTCCTGCTGAGTTTTCATCAGGTTGATAATTTCGGCTGCCGTTCTCACGCCGCCCATTTTGCTGCGCTTGAGATTCTGACCGTCGAGCAAGCCATTCAGTACTTCGGTCAGCTCCGCCAGCGCGGCTGGCTGCACGCCGCCAAAGGTGGCGATACGCAACATCACGTCGTGGCGCAGACGTTCATCGAACAACGCCAGAATATCGGCGGCTTGGGCGCGCTTCAGATGCACCAGAATGGTGGCGATAATTTGCGGATGCTCATCGCGAATCAGATCGGCGGC
      ->scaffold_520
      -TTCCATACAATTACCGCACATCCGATAGTATGTCACAGAAATGTGAAACAAAAGTGTAAGGCGAAGATCGGATGATCTTCGCCAGGCTATCAAGCGCGTTGACTGTCTTTCATCAACAAAGCGGTCATTGCGGAAATCAGGCATCCAGCCAGCAAATAAATGGCGACGCTATGCCAGTTCCCGGCAAAGTAAGTGATGAGTGCAGCGGCAATAAAAGGTGTAAATCCACCGCCAACCACACTGGCAACCTGATAACCGACTCCAGCGCCACTATAGCGATAACTGGCACCAAACATTTCG
       >scaffold_521
      -TAAGGCGGCGGCAATGAGCATCAATATAATGATGGGTGCGGAAGGCGAGGTTTTTGCCCACGTCAGGCCGTTGAGCGATCCGGCATTCCACAAACCTGCTGTTAGCGCCGTTTCTAAAGACGCTTTCAGCAACAGCCAGGTATTAAAGGCCACCAGCATGGCGCGAACGCCGATACCGATAATAATCAACCGAAAGGTGTCGATGCCGTTGCGCCAGGCGAGCAGCCAGACCAGCAGCGAAGTGACAATGCCGCCCACCATTGCTGACAGCGCGATAGCCGTCAGGTCCTGACCAAACA
      +GTTTAACGGTAACGGTGTCCCGAAACGAACCCGTTTCGGGACAATTTCCAAAGTCTGTTCACTGGCATTAGCAACGGAAAATATTGTTCTGAATACGCTTCAGAACAAAACAGGTGCGGTTCCGACAGGAATACCGTTTTAGGGGGATAATATGGCTACATCAGTACAGACAGGTAAAGCTAAGCAGCTCACATTACTTGGATTCTTTGCCATAACGGCATCGATGGTAATGGCTGTTTATGAATACCCTACCTTCGCAACATCGGGCTTTTCATTAGTCTTCTTCCTGCTATTAGGCG
       >scaffold_522
      -GTTTAACGGTAACGGTGTCCCGAAACGAACCCGTTTCGGGACAATTTCCAAAGTCTGTTCACTGGCATTAGCAACGGAAAATATTGTTCTGAATACGCTTCAGAACAAAACAGGTGCGGTTCCGACAGGAATACCGTTTTAGGGGGATAATATGGCTACATCAGTACAGACAGGTAAAGCTAAGCAGCTCACATTACTTGGATTCTTTGCCATAACGGCATCGATGGTAATGGCTGTTTATGAATACCCTACCTTCGCAACATCGGGCTTTTCATTAGTCTTCTTCCTGCTATTAGGCG
      +GATCATGTTATCAGGGTGGGGCGGTAGCGTATATTCCTTATACAAACCATCATTCATTTCAATGATTGTTATTGAATTATTTATTGTTGTGAATAAAAAGACATTATGAATATTGGTTTGACTTTGCATATCAGGTTTTTTATTACTCGCTGTAATGTACGAGCCTGTCGTGAATAACGTCGAGAACCCATCCGTTGCGTTTGTGATTATTTTGTTGACTAAACAGACACCCGTTTCTCTGAAGTAAAATCCCAGACAAATCATCACATAACCATGACATTTTTCTGATATTCCCCGGT
       >scaffold_523
      -ATTTCCTGAAGAGCCTCTGGATGTGGTCATTGGAAGAGCGGACCGGGCAATGTATGAGGGTAAGCAAACCGGAAGAAATCGCTGCATGTTTATTGACGAACAAAATGTGATTAACCGAGTTTAAGCTCCGTTTAACATTCATTGAGAAAACTGATGCTACTGTGTCAACGATTCGTTATCAGTGCAGGAAAATGCCTGTTAGCGTAAAAGCAAAACACAAATCTATCCATGCAAGCATTCACCGCCGGTTTACTGGCGGTTTTTTTTCGCCGTCATAAAAATCAGGCCCCTTGTACACA
      +TGTTTGGTCAGGACCTGACGGCTATCGCGCTGTCAGCAATGGTGGGCGGCATTGTCACTTCGCTGCTGGTCTGGCTGCTCGCCTGGCGCAACGGCATCGACACCTTTCGGTTGATTATTATCGGTATCGGCGTTCGCGCCATGCTGGTGGCCTTTAATACCTGGCTGTTGCTGAAAGCGTCTTTAGAAACGGCGCTAACAGCAGGTTTGTGGAATGCCGGATCGCTCAACGGCCTGACGTGGGCAAAAACCTCGCCTTCCGCACCCATCATTATATTGATGCTCATTGCCGCCGCCTTA
       >scaffold_524
      -ACCGGGGAATATCAGAAAAATGTCATGGTTATGTGATGATTTGTCTGGGATTTTACTTCAGAGAAACGGGTGTCTGTTTAGTCAACAAAATAATCACAAACGCAACGGATGGGTTCTCGACGTTATTCACGACAGGCTCGTACATTACAGCGAGTAATAAAAAACCTGATATGCAAAGTCAAACCAATATTCATAATGTCTTTTTATTCACAACAATAAATAATTCAATAACAATCATTGAAATGAATGATGGTTTGTATAAGGAATATACGCTACCGCCCCACCCTGATAACATGATC
      +TGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCTTAAACTCGGTTAATCACATTTTGTTCGTCAATAAACATGCAGCGATTTCTTCCGGTTTGCTTACCCTCATACATTGCCCGGTCCGCTCTTCCAATGACCACATCCAGAGGCTCTTCAGGAAAT
      
      

    Command Line:

    Exit Code:

    • 0

    Standard Error:

    • ==== MaxBin2 stderr ====
      sh: line 1:  3571 Segmentation fault      (core dumped) idba_ud -r out.reads.002 -o out.tmp --pre_correction --num_threads 6 > out.idba.out 2> out.idba.err
      ==== IDBA stderr ====
      

    Standard Output:

    • ==== MaxBin2 stdout ====
      MaxBin 2.2.7
      Input contig: /corral4/main/objects/7/f/b/dataset_7fbafd42-3111-4cf1-898e-c9889e762fa1.dat
      out header: out
      Reassembly: 1
      Thread: 6
      Located reads file [/corral4/main/objects/0/9/7/dataset_0972bbec-a1c0-4a68-b89c-f98bffac89c2.dat]
      Running Bowtie2 on reads file [/corral4/main/objects/0/9/7/dataset_0972bbec-a1c0-4a68-b89c-f98bffac89c2.dat]...this may take a while...
      Reading SAM file to estimate abundance values...
      Searching against 107 marker genes to find starting seed contigs for [/corral4/main/objects/7/f/b/dataset_7fbafd42-3111-4cf1-898e-c9889e762fa1.dat]...
      Running FragGeneScan....
      Running HMMER hmmsearch....
      Try harder to dig out marker genes from contigs.
      Done data collection. Running MaxBin...
      Command: /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.reads.abund1 -seed out.seed -out out -min_contig_length 1000 -thread 6
      Minimum contig length set to 1000.
      Reading seed list...
      Looking for seeds in sequences.
      	contig-201_2 [2.848706]
      	contig-201_100 [2.993483]
      Get 2 seeds.
      
      Start EM process.
      Iteration 1
      Iteration 2
      Iteration 3
      Iteration 4
      Iteration 5
      Iteration 6
      Iteration 7
      Iteration 8
      Iteration 9
      Iteration 10
      Iteration 11
      Iteration 12
      Iteration 13
      Iteration 14
      
      EM finishes successfully.
      
      Classifying sequences based on the EM result.
      Minimum probability for binning: 0.50
      Ignoring 0 bins without any sequences.
      Number of unclassified sequences: 0 (0.00%)
      Elapsed time:  0 days 00:00:00
      
      Performing reassembly. Reads file found.
      Separating reads according to the bins...
      Reading sam file out.sam0...
      Reading reads file /corral4/main/objects/0/9/7/dataset_0972bbec-a1c0-4a68-b89c-f98bffac89c2.dat...
      Reassembling bin 001
      Command: idba_ud -r out.reads.001 -o out.tmp --pre_correction --num_threads 6 1>out.idba.out 2>out.idba.err
      Placing reassembled contigs into out.reassem
      cp out.tmp/scaffold.fa out.reassem/out.001.fasta
      Reassembling bin 002
      Command: idba_ud -r out.reads.002 -o out.tmp --pre_correction --num_threads 6 1>out.idba.out 2>out.idba.err
      Placing reassembled contigs into out.reassem
      cp out.tmp/scaffold.fa out.reassem/out.002.fasta
      out.001.marker.fasta
      Deleting intermediate files.
      
      
      ========== Job finished ==========
      Yielded 2 bins for contig (scaffold) file /corral4/main/objects/7/f/b/dataset_7fbafd42-3111-4cf1-898e-c9889e762fa1.dat
      
      Here are the output files for this run.
      Please refer to the README file for further details.
      
      Summary file: out.summary
      Marker counts: out.marker
      Marker genes for each bin: out.marker_of_each_gene.tar.gz
      Bin files: out.001.fasta - out.002.fasta
      Unbinned sequences: out.noclass
      
      Store abundance information of reads file [/corral4/main/objects/0/9/7/dataset_0972bbec-a1c0-4a68-b89c-f98bffac89c2.dat] in [out.abund1].
      
      
      ========== Elapsed Time ==========
      0 hours 0 minutes and 41 seconds.
      
      ==== IDBA stdout ====
      number of threads 6
      reads 5310
      long reads 0
      extra reads 0
      read_length 93
      kmer 60
      kmers 50115 49096
      merge bubble 0
      contigs: 11 n50: 297 max: 440 mean: 308 total length: 3388 n80: 262
      aligned 118 reads
      confirmed bases: 1314 correct reads: 22 bases: 0
      kmer 20
      kmers 124468 123767
      merge bubble 1
      contigs: 256 n50: 365 max: 1238 mean: 312 total length: 80098 n80: 267
      aligned 2264 reads
      confirmed bases: 17171 correct reads: 148 bases: 0
      distance mean 1000 sd 0
      seed contigs 205 local contigs 512
      kmer 40
      kmers 76005 75770
      merge bubble 0
      contigs: 189 n50: 394 max: 1309 mean: 389 total length: 73707 n80: 296
      aligned 2183 reads
      confirmed bases: 16749 correct reads: 149 bases: 0
      distance mean 1000 sd 0
      seed contigs 185 local contigs 378
      kmer 60
      kmers 64535 64344
      merge bubble 0
      contigs: 164 n50: 402 max: 1760 mean: 418 total length: 68694 n80: 310
      aligned 2046 reads
      confirmed bases: 15851 correct reads: 135 bases: 0
      distance mean 1000 sd 0
      seed contigs 164 local contigs 328
      kmer 80
      kmers 56030 55866
      merge bubble 0
      contigs: 149 n50: 414 max: 1760 mean: 434 total length: 64672 n80: 329
      aligned 1956 reads
      confirmed bases: 15273 correct reads: 133 bases: 0
      distance mean 1000 sd 0
      seed contigs 149 local contigs 298
      kmer 100
      kmers 49951 49802
      merge bubble 0
      contigs: 126 n50: 438 max: 1760 mean: 460 total length: 58038 n80: 349
      reads 5310
      aligned 1786 reads
      distance mean 1000 sd 0
      expected coverage 0.0384533
      

    Traceback:

    Job Parameters:

    • Job parameter Parameter value
      intype_cond {"__current_case__": 0, "intype_select": "rds", "output_abundances": false, "reads": {"values": [{"id": 113238614, "src": "hda"}]}, "reassembly": true}
      adv_cond {"__current_case__": 0, "adv_select": "no"}
      __job_resource {"__current_case__": 0, "__job_resource__select": "no"}
      chromInfo "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
      dbkey "?"
      __input_ext "fasta"
Passed s
  • ✅ toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2 (Test tool test #1)

    Command Line:

    Exit Code:

    • 0

    Standard Output:

    • MaxBin 2.2.7
      Input contig: /corral4/main/objects/7/f/b/dataset_7fbafd42-3111-4cf1-898e-c9889e762fa1.dat
      out header: out
      Thread: 6
      Located reads file [/corral4/main/objects/0/9/7/dataset_0972bbec-a1c0-4a68-b89c-f98bffac89c2.dat]
      Running Bowtie2 on reads file [/corral4/main/objects/0/9/7/dataset_0972bbec-a1c0-4a68-b89c-f98bffac89c2.dat]...this may take a while...
      Reading SAM file to estimate abundance values...
      Searching against 107 marker genes to find starting seed contigs for [/corral4/main/objects/7/f/b/dataset_7fbafd42-3111-4cf1-898e-c9889e762fa1.dat]...
      Running FragGeneScan....
      Running HMMER hmmsearch....
      Try harder to dig out marker genes from contigs.
      Done data collection. Running MaxBin...
      Command: /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.reads.abund1 -seed out.seed -out out -min_contig_length 1000 -thread 6
      Minimum contig length set to 1000.
      Reading seed list...
      Looking for seeds in sequences.
      	contig-201_2 [2.848706]
      	contig-201_100 [2.993483]
      Get 2 seeds.
      
      Start EM process.
      Iteration 1
      Iteration 2
      Iteration 3
      Iteration 4
      Iteration 5
      Iteration 6
      Iteration 7
      Iteration 8
      Iteration 9
      Iteration 10
      Iteration 11
      Iteration 12
      Iteration 13
      Iteration 14
      
      EM finishes successfully.
      
      Classifying sequences based on the EM result.
      Minimum probability for binning: 0.50
      Ignoring 0 bins without any sequences.
      Number of unclassified sequences: 0 (0.00%)
      Elapsed time:  0 days 00:00:01
      
      out.001.marker.fasta
      Deleting intermediate files.
      
      
      ========== Job finished ==========
      Yielded 2 bins for contig (scaffold) file /corral4/main/objects/7/f/b/dataset_7fbafd42-3111-4cf1-898e-c9889e762fa1.dat
      
      Here are the output files for this run.
      Please refer to the README file for further details.
      
      Summary file: out.summary
      Marker counts: out.marker
      Marker genes for each bin: out.marker_of_each_gene.tar.gz
      Bin files: out.001.fasta - out.002.fasta
      Unbinned sequences: out.noclass
      
      Store abundance information of reads file [/corral4/main/objects/0/9/7/dataset_0972bbec-a1c0-4a68-b89c-f98bffac89c2.dat] in [out.abund1].
      
      
      ========== Elapsed Time ==========
      0 hours 0 minutes and 14 seconds.
      
      

    Traceback:

    Job Parameters:

    • Job parameter Parameter value
      intype_cond {"__current_case__": 0, "intype_select": "rds", "output_abundances": false, "reads": {"values": [{"id": 113238614, "src": "hda"}]}, "reassembly": false}
      adv_cond {"__current_case__": 0, "adv_select": "no"}
      __job_resource {"__current_case__": 0, "__job_resource__select": "no"}
      chromInfo "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
      dbkey "?"
      __input_ext "fasta"
  • ✅ toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2 (Test test against test.galaxyproject.org #2)

    Command Line:

    Exit Code:

    • 0

    Standard Error:

    • Attaching package: 'gplots'
      
      The following object is masked from 'package:stats':
      
          lowess
      
      

    Standard Output:

    • MaxBin 2.2.7
      Input contig: /corral4/main/objects/7/f/b/dataset_7fbafd42-3111-4cf1-898e-c9889e762fa1.dat
      out header: out
      Min contig length: 1000
      Max iteration: 50
      Probability threshold: 0.5
      Thread: 6
      Located reads file [/corral4/main/objects/0/9/7/dataset_0972bbec-a1c0-4a68-b89c-f98bffac89c2.dat]
      Running Bowtie2 on reads file [/corral4/main/objects/0/9/7/dataset_0972bbec-a1c0-4a68-b89c-f98bffac89c2.dat]...this may take a while...
      Reading SAM file to estimate abundance values...
      Searching against 107 marker genes to find starting seed contigs for [/corral4/main/objects/7/f/b/dataset_7fbafd42-3111-4cf1-898e-c9889e762fa1.dat]...
      Running FragGeneScan....
      Running HMMER hmmsearch....
      Try harder to dig out marker genes from contigs.
      Done data collection. Running MaxBin...
      Command: /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.reads.abund1 -seed out.seed -out out -min_contig_length 1000 -max_run 50 -prob_threshold 0.5 -thread 6
      Minimum contig length set to 1000.
      Reading seed list...
      Looking for seeds in sequences.
      	contig-201_2 [2.848706]
      	contig-201_100 [2.993483]
      Get 2 seeds.
      
      Start EM process.
      Iteration 1
      Iteration 2
      Iteration 3
      Iteration 4
      Iteration 5
      Iteration 6
      Iteration 7
      Iteration 8
      Iteration 9
      Iteration 10
      Iteration 11
      Iteration 12
      Iteration 13
      Iteration 14
      
      EM finishes successfully.
      
      Classifying sequences based on the EM result.
      Minimum probability for binning: 0.50
      Ignoring 0 bins without any sequences.
      Number of unclassified sequences: 0 (0.00%)
      Elapsed time:  0 days 00:00:01
      
      Rscript /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/heatmap.r out.marker out.marker.pdf
      null device 
                1 
      out.001.marker.fasta
      Deleting intermediate files.
      
      
      ========== Job finished ==========
      Yielded 2 bins for contig (scaffold) file /corral4/main/objects/7/f/b/dataset_7fbafd42-3111-4cf1-898e-c9889e762fa1.dat
      
      Here are the output files for this run.
      Please refer to the README file for further details.
      
      Summary file: out.summary
      Marker counts: out.marker
      Marker genes for each bin: out.marker_of_each_gene.tar.gz
      Bin files: out.001.fasta - out.002.fasta
      Unbinned sequences: out.noclass
      Marker plot: out.marker.pdf
      
      Store abundance information of reads file [/corral4/main/objects/0/9/7/dataset_0972bbec-a1c0-4a68-b89c-f98bffac89c2.dat] in [out.abund1].
      
      
      ========== Elapsed Time ==========
      0 hours 0 minutes and 7 seconds.
      
      

    Traceback:

    Job Parameters:

    • Job parameter Parameter value
      intype_cond {"__current_case__": 0, "intype_select": "rds", "output_abundances": true, "reads": {"values": [{"id": 113238614, "src": "hda"}]}, "reassembly": false}
      adv_cond {"__current_case__": 1, "adv_select": "yes", "markerset": "107", "max_iteration": "50", "min_contig_length": "1000", "output_log": true, "output_marker": true, "output_markers": true, "plotmarker": true, "prob_threshold": "0.5"}
      __job_resource {"__current_case__": 0, "__job_resource__select": "no"}
      chromInfo "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
      dbkey "?"
      __input_ext "fasta"
  • ✅ toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2 (Test Test Prokka 1.14.6+galaxy1 #3)

    Command Line:

    Exit Code:

    • 0

    Standard Error:

    • Attaching package: 'gplots'
      
      The following object is masked from 'package:stats':
      
          lowess
      
      

    Standard Output:

    • MaxBin 2.2.7
      Input contig: /corral4/main/objects/7/f/b/dataset_7fbafd42-3111-4cf1-898e-c9889e762fa1.dat
      out header: out
      Min contig length: 500
      Max iteration: 10
      Probability threshold: 0.95
      Thread: 6
      Located abundance file [/corral4/main/objects/1/2/e/dataset_12ef0b4b-f5f2-4659-beda-058dec63188d.dat]
      Searching against 107 marker genes to find starting seed contigs for [/corral4/main/objects/7/f/b/dataset_7fbafd42-3111-4cf1-898e-c9889e762fa1.dat]...
      Running FragGeneScan....
      Running HMMER hmmsearch....
      Try harder to dig out marker genes from contigs.
      Done data collection. Running MaxBin...
      Command: /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.abund1 -seed out.seed -out out -min_contig_length 500 -max_run 10 -prob_threshold 0.95 -thread 6
      Minimum contig length set to 500.
      Reading seed list...
      Looking for seeds in sequences.
      	contig-201_2 [11.293216]
      	contig-201_100 [10.048304]
      Get 2 seeds.
      
      Start EM process.
      Iteration 1
      Iteration 2
      Iteration 3
      Iteration 4
      Iteration 5
      Iteration 6
      Iteration 7
      Iteration 8
      Iteration 9
      Iteration 10
      
      EM finishes successfully.
      
      Classifying sequences based on the EM result.
      Minimum probability for binning: 0.95
      Ignoring 0 bins without any sequences.
      Number of unclassified sequences: 23 (9.75%)
      Elapsed time:  0 days 00:00:00
      
      Rscript /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/heatmap.r out.marker out.marker.pdf
      null device 
                1 
      out.001.marker.fasta
      Deleting intermediate files.
      
      
      ========== Job finished ==========
      Yielded 2 bins for contig (scaffold) file /corral4/main/objects/7/f/b/dataset_7fbafd42-3111-4cf1-898e-c9889e762fa1.dat
      
      Here are the output files for this run.
      Please refer to the README file for further details.
      
      Summary file: out.summary
      Marker counts: out.marker
      Marker genes for each bin: out.marker_of_each_gene.tar.gz
      Bin files: out.001.fasta - out.002.fasta
      Unbinned sequences: out.noclass
      Marker plot: out.marker.pdf
      
      
      ========== Elapsed Time ==========
      0 hours 0 minutes and 4 seconds.
      
      

    Traceback:

    Job Parameters:

    • Job parameter Parameter value
      intype_cond {"__current_case__": 1, "abund": {"values": [{"id": 113238611, "src": "hda"}]}, "intype_select": "abdc"}
      adv_cond {"__current_case__": 1, "adv_select": "yes", "markerset": "107", "max_iteration": "10", "min_contig_length": "500", "output_log": false, "output_marker": false, "output_markers": false, "plotmarker": true, "prob_threshold": "0.95"}
      __job_resource {"__current_case__": 0, "__job_resource__select": "no"}
      chromInfo "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
      dbkey "?"
      __input_ext "fasta"

@jennaj
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Collaborator Author

jennaj commented Jun 17, 2023

??

Standard Error:

==== MaxBin2 stderr ====
sh: line 1:  3571 Segmentation fault      (core dumped) idba_ud -r out.reads.002 -o out.tmp --pre_correction --num_threads 6 > out.idba.out 2> out.idba.err
==== IDBA stderr ====

@jennaj
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Collaborator Author

jennaj commented Jun 17, 2023

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2/2.2.7+galaxy2

@jennaj
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Collaborator Author

jennaj commented Jun 17, 2023

^^ that tool version is current. I don't think it ever worked... but let's see

@mvdbeek
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Owner

mvdbeek commented Jun 17, 2023

Results (powered by Planemo)

Summary

State Count
Total 4
Passed 2
Error 0
Failure 2
Skipped 0
Failed s
  • ❌ toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2 (Test test against test.galaxyproject.org #2)

    Problems:

    • Output log:  different than expected, difference (using diff):
      ( /tmp/tmppeby_bn6out.log v. /tmp/tmpgu5d1cliout.log )
      --- local_file
      +++ history_data
      @@ -1,13 +1,16 @@
       MaxBin 2.2.7
      -Input contig: /tmp/tmpkKUAw8/files/2/1/e/dataset_21ee7f6a-b141-4f58-9edf-40cf6498124b.dat
      +Input contig: /corral4/main/objects/9/9/3/dataset_99350127-7194-4aa0-bedc-ce97ddf9ff75.dat
       out header: out
      -Thread: 1
      -Located reads file [/tmp/tmpkKUAw8/files/e/9/9/dataset_e996d3cb-de7d-4e64-a9f8-75cd61e9f791.dat]
      -Running Bowtie2 on reads file [/tmp/tmpkKUAw8/files/e/9/9/dataset_e996d3cb-de7d-4e64-a9f8-75cd61e9f791.dat]...this may take a while...
      -Searching against 107 marker genes to find starting seed contigs for [/tmp/tmpkKUAw8/files/2/1/e/dataset_21ee7f6a-b141-4f58-9edf-40cf6498124b.dat]...
      +Min contig length: 1000
      +Max iteration: 50
      +Probability threshold: 0.5
      +Thread: 6
      +Located reads file [/corral4/main/objects/0/4/1/dataset_04162656-f717-43cd-9579-c59b4574c805.dat]
      +Running Bowtie2 on reads file [/corral4/main/objects/0/4/1/dataset_04162656-f717-43cd-9579-c59b4574c805.dat]...this may take a while...
      +Searching against 107 marker genes to find starting seed contigs for [/corral4/main/objects/9/9/3/dataset_99350127-7194-4aa0-bedc-ce97ddf9ff75.dat]...
       Try harder to dig out marker genes from contigs.
       Done data collection. Running MaxBin...
      -Command: /home/berntm/miniconda3/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.reads.abund1 -seed out.seed -out out -min_contig_length 1000 
      +Command: /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.reads.abund1 -seed out.seed -out out -min_contig_length 1000 -max_run 50 -prob_threshold 0.5 -thread 6
       Minimum contig length set to 1000.
       Reading seed list...
       Looking for seeds in sequences.
      @@ -37,13 +40,13 @@
       Minimum probability for binning: 0.50
       Ignoring 0 bins without any sequences.
       Number of unclassified sequences: 0 (0.00%)
      -Elapsed time:  0 days 00:00:01
      +Elapsed time:  0 days 00:00:00
       
       Deleting intermediate files.
       
       
       ========== Job finished ==========
      -Yielded 2 bins for contig (scaffold) file /tmp/tmpkKUAw8/files/2/1/e/dataset_21ee7f6a-b141-4f58-9edf-40cf6498124b.dat
      +Yielded 2 bins for contig (scaffold) file /corral4/main/objects/9/9/3/dataset_99350127-7194-4aa0-bedc-ce97ddf9ff75.dat
       
       Here are the output files for this run.
      
      

    Command Line:

    Exit Code:

    • 0

    Standard Error:

    • Attaching package: 'gplots'
      
      The following object is masked from 'package:stats':
      
          lowess
      
      

    Standard Output:

    • MaxBin 2.2.7
      Input contig: /corral4/main/objects/9/9/3/dataset_99350127-7194-4aa0-bedc-ce97ddf9ff75.dat
      out header: out
      Min contig length: 1000
      Max iteration: 50
      Probability threshold: 0.5
      Thread: 6
      Located reads file [/corral4/main/objects/0/4/1/dataset_04162656-f717-43cd-9579-c59b4574c805.dat]
      Running Bowtie2 on reads file [/corral4/main/objects/0/4/1/dataset_04162656-f717-43cd-9579-c59b4574c805.dat]...this may take a while...
      Reading SAM file to estimate abundance values...
      Searching against 107 marker genes to find starting seed contigs for [/corral4/main/objects/9/9/3/dataset_99350127-7194-4aa0-bedc-ce97ddf9ff75.dat]...
      Running FragGeneScan....
      Running HMMER hmmsearch....
      Try harder to dig out marker genes from contigs.
      Done data collection. Running MaxBin...
      Command: /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.reads.abund1 -seed out.seed -out out -min_contig_length 1000 -max_run 50 -prob_threshold 0.5 -thread 6
      Minimum contig length set to 1000.
      Reading seed list...
      Looking for seeds in sequences.
      	contig-201_2 [2.848706]
      	contig-201_100 [2.993483]
      Get 2 seeds.
      
      Start EM process.
      Iteration 1
      Iteration 2
      Iteration 3
      Iteration 4
      Iteration 5
      Iteration 6
      Iteration 7
      Iteration 8
      Iteration 9
      Iteration 10
      Iteration 11
      Iteration 12
      Iteration 13
      Iteration 14
      
      EM finishes successfully.
      
      Classifying sequences based on the EM result.
      Minimum probability for binning: 0.50
      Ignoring 0 bins without any sequences.
      Number of unclassified sequences: 0 (0.00%)
      Elapsed time:  0 days 00:00:00
      
      Rscript /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/heatmap.r out.marker out.marker.pdf
      null device 
                1 
      out.001.marker.fasta
      Deleting intermediate files.
      
      
      ========== Job finished ==========
      Yielded 2 bins for contig (scaffold) file /corral4/main/objects/9/9/3/dataset_99350127-7194-4aa0-bedc-ce97ddf9ff75.dat
      
      Here are the output files for this run.
      Please refer to the README file for further details.
      
      Summary file: out.summary
      Marker counts: out.marker
      Marker genes for each bin: out.marker_of_each_gene.tar.gz
      Bin files: out.001.fasta - out.002.fasta
      Unbinned sequences: out.noclass
      Marker plot: out.marker.pdf
      
      Store abundance information of reads file [/corral4/main/objects/0/4/1/dataset_04162656-f717-43cd-9579-c59b4574c805.dat] in [out.abund1].
      
      
      ========== Elapsed Time ==========
      0 hours 0 minutes and 18 seconds.
      
      

    Traceback:

    Job Parameters:

    • Job parameter Parameter value
      intype_cond {"__current_case__": 0, "intype_select": "rds", "output_abundances": true, "reads": {"values": [{"id": 113238744, "src": "hda"}]}, "reassembly": false}
      adv_cond {"__current_case__": 1, "adv_select": "yes", "markerset": "107", "max_iteration": "50", "min_contig_length": "1000", "output_log": true, "output_marker": true, "output_markers": true, "plotmarker": true, "prob_threshold": "0.5"}
      __job_resource {"__current_case__": 0, "__job_resource__select": "no"}
      chromInfo "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
      dbkey "?"
      __input_ext "fasta"
  • ❌ toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2 (Test Test roary 3.13.0+galaxy2 #4)

    Problems:

    • Collection element 001 of collection reassembly_bins:  different than expected, difference (using diff):
      ( /tmp/tmp5zg006_qout.001.fasta v. /tmp/tmp914tm5n0out.001.fasta )
      --- local_file
      +++ history_data
      @@ -1,49 +1,49 @@
       >scaffold_0
      -ATTGAAGGGGTTATCAGCCAGTTACAGGCTACGGCGATGAGTGCGCGTGCGCAGGAATCACTGCCGCAACCGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCTGCCCGCACGCAGGCAGAAAAATTCACTCTCGGTGAACCCGGCGTGGCGTTAAACGATGTGATGACCGATATGCAAAAAGCCTCAGTTTCTATGCAAATGGGGATTCAGGTGCGTAATAAGCTGGTGGCGGCGTATCAGGAAGTGATGAGCATGCAGGTGTAGGTTTTGTAACCTGTTGTTAATTACATCCGATCTCACCGCGTGGGGCATGGATGGGGCAAACTCACTCAATTTCTGGTTTAAAATGGATACCTGATCCTGAACGTTTTCTGCCATCCACGATCCGTATACGCGATAACCCCCCTGAACATCAGAGCGTCTCATTTGACACATCACCACGTCGGATGTTGTTACGACCACAGACGCAACAGTAACCTCTGGATAATTTAATCTTTGTTGATGTTTTTATTCATATTCCGGGCGATGGATATGAGCGATTTTTGATAGTGGTAATTTTATTGTGTTTTAGAATGCGCCCTGGGCAATATAATTTATTAAACAGGAGTGTAAATGTTTCCATTAAATGATCTTTCGTTAAAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGTATCTGATGATGCAATCATAAATGAATTATCAAGTGAGTTAGTCAGTTGTCTTGGAAATGGTAAGTTTACACCAATTAGTGAAGACAGCAAATTATTTAATATGCTGTCAGAATTTAAGTTATTGCACTCAGAATATTTCGAATGGGGTGATTATAGTCTCTGGTTTCAAGATTTCTCGATTTATAATAAGATAGGTTTTATCATGATAGAAAAAATCAGGGAACTGGTAACCCACCCATTCGGCATAAATTAGAGTTTATATCGACTAATATTGCAGAGTTTCTAGACAACTTTACGAAAATTACAGATTCCAGACTTTGCAAAGGTTTCAGCGACTGGGCTAATTCAGTAAAAGAAGGCGCATCGAATGACTTCAAAAAAAATGTGGATATAGCATTGGTGAGATTGTTTAAATGTGTTGAACTCCACAATAGTAAACTTGACTTAACAGATCTTCACTTGGGGTCTTTGCCACCTCTTCCATCCTGGATTGAGGTGCTTTATCTTCGTCATAATGGCCTTGCCACAATACAAATTCCCAAATTCTGCAAAGAATTAGAGCTCGATTTCAATAATTATATGGTATTTCCAAAAGTATCCGATGGAATTACCCAGGTCTCCGTAGATAATAATCTGATATCGCGTGTTGACTCATCTCCGTCAAAGGCTATGACAATTTCTATTTATCGCAATAAAATATGGTAAATACCAGCAATGCCTGAGACTACTAAGCTGTTTAATTGTGGCGATAATAAGATAAAAGAAATTCAATACTTCCCAAATCATCTGGAGAAAGCACGTATGGAGTGTGATATTGAGGTTGTCTCTGCGATATATAGCAATAAAGAATTACTTTTTAAAGAATGTAATTCTTTTGAAGAGACATTTTTATATCATGGACTTTGACAGGGATTTGCTATGAAAGATCGCAGCGAAAATATATTGTTACGAATCCCGCTGATTATGATAAATATTCCGATATGGTTAAAAAGTATGTAATAGATGGTGAGGAACTCATAATTAAATATTAAATGTAATTAATTAGGCGCAATTGTGTCACTGGAATAGAGGTTTCTTGTGGCGCATGTGGAAGGGGCGTCTATGGACAAGGCGTTTCCTGCTGGTGATAAATAAAG
      +CTTTATTTATCACCAGCAGGAAACGCCTTGTCCATAGACGCCCCTTCCACATGCGCCACAAGAAACCTCTATTCCAGTGACACAATTGCGCCTAATTAATTACATTTAATATTTAATTATGAGTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGCTTAGTAGTCTCAGGCATTGCTGGTATTTACCATATTTTATTGCGATAAATAGAAATTGTCATAGCCTTTGACGGAGATGAGTCAACACGCGATATCAGATTATTATCTACGGAGACCTGGGTAATTCCATCGGATACTTTTGGAAATACCATATAATTATTGAAATCGAGCTCTAATTCTTTGCAGAATTTGGGAATTTGTATTGTGGCAAGGCCATTATGACGAAGATAAAGCACCTCAATCCAGGATGGAAGAGGTGGCAAAGACCCCAAGTGAAGATCTGTTAAGTCAAGTTTACTATTGTGGAGTTCAACACATTTAAACAATCTCACCAATGCTATATCCACATTTTTTTTGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCTGAGTGCAATAACTTAAATTCTGACAGCATATTAAATAATTTGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACTGGCTGATAACCCCTTCAAT
       >scaffold_1
      -CTGAATACGCTATACCACAAAAAGTGACGATTAGTATTGGCGCTGTTGTGACTCAGGAAAATGCGTTAAACCCAAATGAGATCTATCGACTGGCTGATAACGCACTTTACGAGGCGAAAGAGACCGGGCGTAATAAGGTGGTTGTGAGGGATGTGGTGAATTTTTGTGAGTCACCATAAAGCGGCATTTTGATCCTACCCACGTAATATGGACACAGGCCTAAGCGAGGTTCTTGTTTTCAAATTGTTCCGGACTGAGGCCGCCACACCAACTGTGCCGCCGCCACCGATTGTAATCACATTCGATATAATTAAACACCGTTGCCCGCATTATTTCCCGGCTGATAAAGTGTTCTCCATGGATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGCTGAACAGTACTGGCCTCCACGGTCCGTGTGAACGATAACGTTCCGGGGCCTCTTACGCCGCCACAGCGCCATCTGCAGGGCATCGCAGGCCAGTTGCGCCGTCATGCGTGGCGACATTGACCAGCCAATAACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATGTCTCCTGCCCACTTCTGGTTCGGGCCACTGGCGTAAAAATCCTGCTCCAACAGATTTTCTGACACAGGCAGGCCGTGTGCGCGGTAGCTGACCGGGCTGAACTTCCGGGAGGCCTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGTCGCAGTGTTGGCGGAACTGCTGACGCGTGCTTATCCTTGTCCGCCGCTGACACCACGTATACCAGCCGCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCCTGGCACACGCGTTTGATGGAAGACGGCGTTCAGGCAATGCGCGATTATCTTGCCGGACTGGATATCGCTTCGCCAGAGCATCAGGTTCTGATGAACGTAACAGCAAAAAGCGAGGTCGCTCCGTCAATTATCAAAGAAAATCTCTCATTACACTTAACTCATACGGTGAAATGGACTGAATCTCTCGATACATTTCTGAATATGCCAACCCCGGTAGCTTTCCTTGAAATAAGTAATAAGCCCTATTTGGGGAATATGTTAAATGATTTTGCTGGCGTGG
      +CCACGCCAGCAAAATCATTTAACATATTCCCCAAATAGGGCTTATTACTTATTTCAAGGAAAGCTACCGGGGTTGGCATATTCAGAAATGTATCGAGAGATTCAGTCCATTTCACCGTATGAGTTAAGTGTAATGAGAGATTTTCTTTGATAATTGACGGAGCGACCTCGCTTTTTGCTGTTACGTTCATCAGAACCTGATGCTCTGGCGAAGCGATATCCAGTCCGGCAAGATAATCGCGCATTGCCTGAACGCCGTCTTCCATCAAACGCGTGTGCCAGGCACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTGGTGTCAGCGGCGGACAAGGATAAGCACGCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTGCGCCGTCAGGGACTGAGGGCAAAGGCCTCCCGGAAGTTCAGCCCGGTCAGCTACCGCGCACACGGCCTGCCTGTGTCAGAAAATCTGTTGGAGCAGGATTTTTACGCCAGTGGCCCGAACCAGAAGTGGGCAGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCGCCACGCATGACGGCGCAACTGGCCTGCGATGCCCTGCAGATGGCGCTGTGGCGGCGTAAGAGGCCCCGGAACGTTATCGTTCACACGGACCGTGGAGGCCAGTACTGTTCAGCAGATTATCAGGCGCAACTGAAGCGGCATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTTATCAGCCGGGAAATAATGCGGGCAACGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAAATGCCGCTTTATGGTGACTCACAAAAATTCACCACATCCCTCACAACCACCTTATTACGCCCGGTCTCTTTCGCCTCGTAAAGTGCGTTATCAGCCAGTCGATAGATCTCATTTGGGTTTAACGCATTTTCCTGAGTCACAACAGCGCCAATACTAATCGTCACTTTTTGTGGTATAGCGTATTCAG
       >scaffold_2
      -AAAGGCGCGTAACAGATTTAGAGGTGCTTTTGCTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTCGTTGACCAGAACTACACCGTGGCAGATGCAGCCAGCGCTATGGATGTCGGCCTTTCCACAATGACGCGATGGGTGAAACAATTACGTGATGAACGGCAGGGCAAAACACCAAAAGCCTCCCCCATTACCCCGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGCTGGTTTGTCAGCCAAAATGAGCATTCGTGCGATAGCTACTGCGCTGAATCGCAGTCCTTCGACGATCTCACGTGAAGTTCAGCGTAATCGGGGCAGACGCTATTACAAAGCTGTTGATGCTAATAACCGAGCCAACAGAATGGCGAAAAGGCCAAAACCGTGCTTACTGGATCAAAATTTACCATTGCGAAAGCTTGTTCTGGAAAAGCTGGAGATGAAATGGTCTCCAGAGCAAATATCAGGATGGTTAAGGCGAACAAAACCACGTCAAAAAACGCTGCGAATATCACCTGAGACAATTTATAAAACGCTGTACTTTCGTAGCCGTGAAGCGCTACACCACCTGAATATACAGCATCTGCGACGGTCGCATAGCCTTCGCCATGGCAGGCGTCATACCCGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTAGGGCATTGGGAGGGCGATTTAGTCTCAGGTACAAAAAACTCTCATATAGCCACACTTGTAGACCGAAAATCACGTTATACGATCATCCTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGGGGAACAAATGAGAACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAGTAGCCTTTTTAATATTTCATTCTCCATTTCAATCCGTTGTAGCTTTTTCCTCAGCTTACGTATTTCGATTTGTTCTGGTGTTATCGGAGAGGCTTTTGGTGT
      +AAAGGCGCGTAACAGATTTAGAGGTGCTTTTGCTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTCGTTGACCAGAACTACACCGTGGCAGATGCAGCCAGCGCTATGGATGTCGGCCTTTCCACAATGACGCGATGGGTGAAACAATTACGTGATGAACGGCAGGGCAAAACACCAAAAGCCTCCCCCATTACCCCGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGCTGGTTTGTCAGCCAAAATGAGCATTCGTGCGATAGCTACTGCGCTGAATCGCAGTCCTTCGACGATCTCACGTGAAGTTCAGCGTAATCGGGGCAGACGCTATTACAAAGCTGTTGATGCTAATAACCGAGCCAACAGAATGGCGAAAAGGCCAAAACCGTGCTTACTGGATCAAAATTTACCATTGCGAAAGCTTGTTCTGGAAAAGCTGGAGATGAAATGGTCTCCAGAGCAAATATCAGGATGGTTAAGGCGAACAAAACCACGTCAAAAAACGCTGCGAATATCACCTGAGACAATTTATAAAACGCTGTACTTTCGTAGCCGTGAAGCGCTACACCACCTGAATATACAGCATCTGCGACGGTCGCATAGCCTTCGCCATGGCAGGCGTCATACCCGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTAGGGCATTGGGAGGGCGATTTAGTCTCAGGTACAAAAAACTCTCATATAGCCACACTTGTAGACCGAAAATCACGTTATACGATCATCCTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAGTAGCCTTTTTAATATTTCATTCTCCATTTCAATCCGTTGTAGCTTTTTCCTCAGCTTACGTATTTCGATTTGTTCTGGTGTTATCGGAGAGGCTTTTGGTGT
       >scaffold_3
       GGAACTGAATTTCAAAGCTCGTATGGAATCCCCAAGCAAAGATGCCACCCCGGGCAACGTTTACGCTCAGGCTGACTACAAGATTGCTTACGAGTAATCGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTATTGCCCGGGGATGGGGAGTAAGCTTAGTCAGCCGTTGTCTCCGGGTGTCGCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGCAGAGTGGCCGTGAAAGAAAGCAATCAGCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCACGTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTCACTACCGGCGGCTTCAACAGTGAAACAGTACAGGACGTCATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTC
       >scaffold_4
      -ATGAATAGACAGCCAATATATTATTGCGATTAATAAGCAACCGAATGCCCAGCTGTTTTTTTAAAGGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGCCGCGACGACACATAATGCGCATCACCACGATGTCGGTGGCTTCACCGCCGAGAGTGAAGGCCGGAACCTGCCAGCCGCGCAGACGCAGACGTTCAGAGAGGTCATACAGGGTGTATCCCGGATCTTCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCGATTTCATCCGCCAGATAAGCGGCAACCTGGTAAGAGGCGTTCTGTACTTTGGTATAGCCTTCACGACCGAGGCGCAGGAATTCATAGTACTGTGCAATTACCTGACCCGCCGGGCGGGAGAAGTTGATGGCAAAAGTACCAATTTGACCACCCAGGTAGTCAACGTTGAACACCAGTTCCTGCGGCAGCGCTTCTTCGTCACGCCAGATAACCCAGCCGCAGCCCAGCGGAGCCAGACCGAATTTATGGCCTGAAGCACTGATCGATTTCACACGCGGCAGGCGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAATTTATCCAGCGCATCGTGCAGCGGTTGTGGGAACTCATAGTTACCAGTGTAGGTCACGCCGAAAGTCGGCACCACGCCGATGGTGTTTTCGTCACAGGCTTCAATCATGCGTTTCGGGTCCATAAACAACTGACCGGGGCGCATAGGGATCTCACGCAGCTCCACATCCCAGTAGCGGGCGAATTTATGCCAGCAGATTTGTACCGGACCGCACACCAGGTTTGGTTTATCCGTTGGTTTGCCTGCAGCTTCCATACGCTTGCGCCAACGCCATTTCATCGCCATCCCGCCGAGCATACAGGCCTCGGAAGAACCAATGGTGTTGGTGCCAACGGCCTGACCATTTTTCGGCGCAGGCGCATGCCACAGATCGGCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAATCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATAATTCGTCATTGATAATCTGGAATGCGACATCGTCGCGCATTTCGTGCAGCGGAAAACGTTTTGATTCTGCGATAGTGGAAATAGACTTCGCACCAAAACGTGAATCGAGTAGTTCTGAGCGGAAATCCGTTAACAGCTTCTGGTCCATTTCGAACTCCTTAAATTTATTTGAAGGCAATAAAAAAGTAGGATTTATCCGCAATGGAAGCAAGGCATTACAGGCTTAATTTAAATAACAAAATCCTAAGCAGAAAAACGACTTTTTATAATATAA
      +TTATATTATAAAAAGTCGTTTTTCTGCTTAGGATTTTGTTATTTAAATTAAGCCTGTAATGCCTTGCTTCCATTGCGGATAAATCCTACTTTTTTATTGCCTTCAAATAAATTTAAGGAGTTCGAAATGGACCAGAAGCTGTTAACGGATTTCCGCTCAGAACTACTCGATTCACGTTTTGGTGCGAAGTCTATTTCCACTATCGCAGAATCAAAACGTTTTCCGCTGCACGAAATGCGCGACGATGTCGCATTCCAGATTATCAATGACGAATTATATCTTGATGGCAACGCTCGTCAGAACCTGGCCACTTTCTGCCAGACCTGGGACGACGAAAATGTCCACAAATTGATGGATTTATCCATTAACAAAAACTGGATCGACAAAGAAGAATATCCGCAATCCGCAGCCATCGACCTGCGTTGCGTAAATATGGTTGCCGATCTGTGGCATGCGCCTGCGCCGAAAAATGGTCAGGCCGTTGGCACCAACACCATTGGTTCTTCCGAGGCCTGTATGCTCGGCGGGATGGCGATGAAATGGCGTTGGCGCAAGCGTATGGAAGCTGCAGGCAAACCAACGGATAAACCAAACCTGGTGTGCGGTCCGGTACAAATCTGCTGGCATAAATTCGCCCGCTACTGGGATGTGGAGCTGCGTGAGATCCCTATGCGCCCCGGTCAGTTGTTTATGGACCCGAAACGCATGATTGAAGCCTGTGACGAAAACACCATCGGCGTGGTGCCGACTTTCGGCGTGACCTACACTGGTAACTATGAGTTCCCACAACCGCTGCACGATGCGCTGGATAAATTCCAGGCCGATACCGGTATCGACATCGACATGCACATCGACGCTGCCAGCGGTGGCTTCCTGGCACCGTTCGTCGCCCCGGATATCGTCTGGGACTTCCGCCTGCCGCGTGTGAAATCGATCAGTGCTTCAGGCCATAAATTCGGTCTGGCTCCGCTGGGCTGCGGCTGGGTTATCTGGCGTGACGAAGAAGCGCTGCCGCAGGAACTGGTGTTCAACGTTGACTACCTGGGTGGTCAAATTGGTACTTTTGCCATCAACTTCTCCCGCCCGGCGGGTCAGGTAATTGCACAGTACTATGAATTCCTGCGCCTCGGTCGTGAAGGCTATACCAAAGTACAGAACGCCTCTTACCAGGTTGCCGCTTATCTGGCGGATGAAATCGCCAAACTGGGGCCGTATGAGTTCATCTGTACGGGTCGCCCGGACGAAGGCATCCCGGCGGTTTGCTTCAAACTGAAAGATGGTGAAGATCCGGGATACACCCTGTATGACCTCTCTGAACGTCTGCGTCTGCGCGGCTGGCAGGTTCCGGCCTTCACTCTCGGCGGTGAAGCCACCGACATCGTGGTGATGCGCATTATGTGTCGTCGCGGCTTCGAAATGGACTTTGCTGAACTGTTGCTGGAAGACTACAAAGCCTCCCTGAAATATCTCAGCGATCACCCGAAACTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTGCTTATTAATCGCAATAATATATTGGCTGTCTATTCAT
       >scaffold_5
       GACCTCATCGTTAGGTTGTGAATGAGAGTACGTTCACTTTTCTTCTGAACGTGAGATTAAGTGTAGTCAGCAATTTGGCTTAGGATTATTTATTCAGAATTTTTAACCGTCACGTTGCGGCAAACCAGGTACCATTGCGCCAGTGACGCCGCCAGATAGCCGCCAGAGAAAGCCCGCGCAACGCCAGAAAGACGGTTAATGCCAGCCACAAAGCATGATTACCCAGCCACGGCAGCGTAAGGAGCGTCAGCGCAAAACCTGCGGCGGCCACCGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATAACACCAGACGCCAACCACCGGCAAAATCACCTGCCAGATAAGATAGCGGTCAGCCAGCTGCTGAATCTGGGTTAACGACGTCAGTAACGCAATGATGTGTTCCCCAGCCAGCAAATAAACCACCGAAAACAGTAACGCTACGATCCCCGACTGGCGGCACGCTGCCCGCCAGACATCCAGCAACTGGCTACCGTCGCGCGCACCGTATGCCTGACCGGAGTGCGCTTCAACCGCGTAGGCAAAACCATCCAGCGCATAGGCGGTAAAGGTGAGTAGCGTCATCAGAACCGCGTTAACAGCGATAATGTCACTCCCCAGTCGCGCGCCAAGTACGGTGATCGCGCCGAAACAGAGTTGCAACAACAGCGAACGCAGCATGATATCGCGGTTAAGCGCCAGCAAGCGACGGAAGTTTCCTCGCCAGGCAGTTTTCAGCATTTCGCCGGAAATTCCGCGTAGTTTGAGGATTTTACGCACCATTAGCAGACCAATCAGCAATGTTGCATATTCCGCAATAACCGTCGCCAGCGCCGCGCCCTGCACGTTCATATGCAGCCCCATCACCAGCCAGACATCCAGCACAATGTTGAGGATATTGCCGACCACTAACAAAATTACTGGCGCACGGGCATATTGCACGCCGAGTAACCAACCGAGTAATACCAGATTCGCCAGCGACGCCGGTGCGCTTAACCAGCGGATTTCAAGAAAGCGCCGCGCCTGTTCCAGGACTGCCTCACTACCGCCAACAATATGCAGCGCCAGATCGATAATCGGCGTACGCAGCAGCGCAATTAACGCCCCAGCCCCCAACGCCAACAGCAACGGTTGCACCAGCGTACGGGCTAATGCCTGAGGATTTTTGGCACCATAAGCCTGCGCAGTCAGCCCGGTGGTGCTCATGCGTAAAAACAGCAACAGCATAAAGAGAAAGCTGGTCGCCGTTGCACCAACCGCCACGCCGCCCAAATAAACCGGGCTATCAAGATGACCAATTACCGCCGTATCGACCAGTCCCAGCAACGGAACGGTGATATTGGAGAAAATCATGGGTAAGGCGAGATGCCAGAGTGCTTTATCAGATGAAGTGAGGAATGCCATGCAGACAAGCCTGATGAAGAGAGATGAAAAACAAACCGCGACGCCAGGCGGCATCGCGGTCTCAGAGATATGTTACAGCCAGTCGCCGTTGCGAATAACCCCAACCGCCAGCCCTTCAATGGTGAAGCTCTGCTGACGAAGGTCAACGACAATTGGTTTA
       >scaffold_6
       GAACGGCATGTTTGGTGCGTGTCTGATGGGTAATGCGCAGCTGGTTGCCGACTGCGTGAAAGCGATGCGCGATGTGGTGTCGATTCCGGTGACGGTGAAAACGCGTATTGGCATCGACGACCAGGACAGCTATGAATTTCTCTGCGATTTCATCAATACCGTTTCCGGCAAAGGCGAGTGTGAGATGTTCATCATCCACGCACGTAAAGCCTGGCTTTCGGGGTTAAGCCCGAAAGAAAACCGTGAAATCCCGCCGCTCGATTATCCGCGTGTGTATCAACTGAAGCGTGACTTTCCGCATCTGACAATGTCGATTAACGGTGGTATCAAGTCGCTGGAAGAGGCCAAAGCACACCTGCAACATATGGATGGCGTGATGGTCGGGCGCGAGGCGTATCAGAATCCGGGTATTCTGGCGGCGGTAGACCGGGAGATCTTTGGTTCCTCGGATACCGATGCCGATCCGGTGGCGGTAGTGCGCGCCATGTATCCGTACATTGAGCGTGAACTCAGCCAGGGGACGTATCTCGGCCATATTACCCGGCATATGTTGGGCTTGTTCCAGGGTATTCCTGGCGCGCGGCAGTGGCGGCGTTATTTAAGTGAAAATGCCCATAAAGCGGGTGCAGACATTAATGTGCTGGAACACGCGCTCAAACTGGTGGCGGATAAGCGTTAACTTTTCACCAAAAAGTAGTCAAATTCACCACGCCCTGCGCACCGTCGCGGGGCGTTTTGCTGTTAAATCAATAGATTATTTTTGGCATGATTCTTGTAATGCCAGCAAGAGATTTCATATTTGGGAGAGCATCATGCTGGAACTACTTTTTGTGATTGGCTTTTTTGTCATGCTGATGGTCACCGGCGTTTCGTTGCTGGGCATTATCGCCGCGCTGGTTGTGGCGACGGCCATTATGTTCCTCGGCGGTATGCTGGCATTGATGATTAAGTTGCTGCCGTGGTTACTACTGGCGATTGCGGTGGTGTGGGTTATTAAGGCGATTAAAGCACCAAAAGTGCCGAAATATCAGCGTTATGACCGCTGGCGTTACTAAGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAAGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTG
       >scaffold_7
      -AACTGCTGAATGCGCTGTCACAGGCTTCTTATATTCATGTACGTGAAGGTCGTGGGGCGATTAACTTCTCCCGCTTCAACCAGGCCTACATGATGCATGCCACCACCTCCCCGCTGTATGCCATCTGCGCATCCAACGACGTGGCGGTGTCGATGATGGACGGCAACAGCGGCCTGTCACTGACACAGGAAGTGATTGACGAAGCGGTTGATTTCCGTCAGGCGATGGCGCGGCTATATAAAGAGTTCACCGCTGACGGTAGCTGGTTCTTCAAACCGTGGAACAAAGAAGTCGTCACCGACCCACAAACCGGCAAACCTATGACTTTGCTGACGCACCAACCAAACTGCTGACCACCGTTCAGGACTGCTGGGTAATGCATCCGGGCGAAAGCTGGCACGGCTTCAAAGATATTCCGGATAACTGGAGTATGCTCGACCCGATTAAAGTCAGCATCCTTGCTCCGGGAATGGGTGAAGATGGTGAACTGGAAGAAACCGGTGTTCCGGCGGCGCTGGTCACTGCCTGGCTTGGTCGCCACGGCATTGTACCTACCCGCACCACTGACTTCCAAATTATGTTCCTGTTCTCTATGGGCGTAACCCGTGGGAAATGGGGAACTCTGGTTAACACCCTTTGCTCCTTCAAACGCCACTATGACGCCAACACACCGCTGGCGCAGGTGATGCCGGAACTTGTTGAACAATATCCTGACACTTACGCGAACATGGGGATTCACGATCTGGGTGACACCATGTTTGCCTGGCTGAAAGAAAACAACCCTGGCGCACGGTTGAACGAAGCCTATTCCGGCCTGCCGGTGGCGGAAGTCACCCCGCGTGAAGCGTACAACGCGATTGTCGACAACAATGTCGAACTGGTATCCATTGAAAATCTGCCAGGACGCATCGCGGCAAACTCAGTTATCCCGTATCCGCCAGGAATCCCGATGCTGCTGTCTGGTGAAAACTTCGGCGATAAAAACAGTCCGCAAGTAAGTTATTTACGCTCGCTGCAATCCTGGGACCACCATTTCCCTGGATTTGAACACGAAACTGAAGGGACTGAAATTATTGACGGTATTTACCACGTTATGTGCGTGAAAGCGTAACCACTATTCCGCTGAAGGCGTAATTGTTTAAATAACATTACGCCGCCTGGCCTTAGGCCTTTTGAGTATGGCAACGTTTTCATAAAAATTGCTGCAAACAAAAATGTCATACTTTTTGCGCGGCCCCACCCCGCGCTTTTTTTTGCCTGTTATTTATCCTGTAAAAAAATATGTACATGAGAAATTACTATAAAAATTTGTACTATTAGTAAAACTCGTTATTTTTATGCATGTTTATATTCATCATACAATTATATAACCATTTCCCGGTATCGCTTTGCTTTAGCGAGAACTGGTCTTTTATTCGCACTCAGGAGTACATGTATGAGGATTTGCAGCGACCAACCTTGTATTGTTTTATTGACTGAAAAAGATGTCTGGATAAGGGTGAATGGG
      +CCCATTCACCCTTATCCAGACATCTTTTTCAGTCAATAAAACAATACAAGGTTGGTCGCTGCAAATCCTCATACATGTACTCCTGAGTGCGAATAAAAGACCAGTTCTCGCTAAAGCAAAGCGATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGTGGTAAATACCGTCAATAATTTCAGTCCCTTCAGTTTCGTGTTCAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCGGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAGGCCGGAATAGGCTTCGTTCAACCGTGCGCCAGGGTTGTTTTCTTTCAGCCAGGCAAACATGGTGTCACCCAGATCGTGAATCCCCATGTTCGCGTAAGTGTCAGGATATTGTTCAACAAGTTCCGGCATCACCTGCGCCAGCGGTGTGTTGGCGTCATAGTGGCGTTTGAAGGAGCAAAGGGTGTTAACCAGAGTTCCCCATTTCCCACGGGTTACGCCCATAGAGAACAGGAACATAATTTGGAAGTCAGTGGTGCGGGTAGGTACAATGCCGTGGCGACCAAGCCAGGCAGTGACCAGCGCCGCCGGAACACCGGTTTCTTCCAGTTCACCATCTTCACCCATTCCCGGAGCAAGGATGCTGACTTTAATCGGGTCGAGCATACTCCAGTTATCCGGAATATCTTTGAAGCCGTGCCAGCTTTCGCCCGGATGCATTACCCAGCAGTCCTGAACGGTGGTCAGCAGTTTGGTTGGTGCGTCAGCAAAGTCATAGGTTTGCCGGTTTGTGGGTCGGTGACGACTTCTTTGTTCCACGGTTTGAAGAACCAGCTACCGTCAGCGGTGAACTCTTTATATAGCCGCGCCATCGCCTGACGGAAATCAACCGCTTCGTCAATCACTTCCTGTGTCAGTGACAGGCCGCTGTTGCCGTCCATCATCGACACCGCCACGTCGTTGGATGCGCAGATGGCATACAGCGGGGAGGTGGTGGCATGCATCATGTAGGCCTGGTTGAAGCGGGAGAAGTTAATCGCCCCACGACCTTCACGTACATGAATATAAGAAGCCTGTGACAGCGCATTCAGCAGTT
       >scaffold_8
      ********
      *SNIP *
      ********
      ->scaffold_516
      -TATGAGCGAATGCTGCGCGGTGATGTGAAATATCGTTTTGTTATCGATAATCGCACACTAACAGACTGAAAAAATTAATAAATACCCTGTGGTTTAACATATTAACTTCGCTCTCCACTTAACTTTTTAGTTAAGGAGAGCGAAATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAATACTTCACACGTTAGTTATGAGCGATTTCTGATAGTGCCTGGTTTAATCAGAGCTTTATTATCTGCGACGTTTATTTTTATTTAAGA
       >scaffold_517
      +TTTTATCTCCACCCGGTAATATTTGTGTGTAAAAAAAGGGTAGTGATAGTATCGTAAAGGAAATCGTTAACAACTATCAAAATGCGCTCATTTTAAAAAGTTATTATGTTCTCTGATAGTGTGTGAAGTGATTTTTTTTGTGATGTTTTAGATGTGTAATAATAAAATGGGTTAAGGTATCTTATAATTATTTAATAATTTGTTGTGTAAACCACTGATAAATCATAATCCAGTACGTCTTTAAACTACTGCGCTGTATCGCTGATAACTAAGCAGCTCACTGATACACCATGCTGGACGC
      +>scaffold_518
       GCAAACCCTTTTGGTATCCACAACTGCTGCTTATTATCAGCTGAAAGCAGAACACCAACCCATTTACCAAAGGATACCGAATTGGGTCGAATATCAACAGCAACATCAAAAACTGCTCCATGAGTGCAGCGTACAAGTTTATCTTGTGCGTACTCGCCGCGTTGAAAGTGAAGGCCTCTGAGTACATTTTTTGATGAACGTGAGTGATTGTCTTGAACAAAGCTGACCGGATAGCCTAGAATATGTTCAAATGCTGATTGATTAAAGCTCTCATAAAAGAAACCTCTATCATCACCAAATA
      ->scaffold_518
      -GCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTATAAGATACCTTAACCCATTTTATTATTACACATCTAAAACATCACAAAAAAAATCACTTCACACACTATCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAA
       >scaffold_519
      +TTCCATACAATTACCGCACATCCGATAGTATGTCACAGAAATGTGAAACAAAAGTGTAAGGCGAAGATCGGATGATCTTCGCCAGGCTATCAAGCGCGTTGACTGTCTTTCATCAACAAAGCGGTCATTGCGGAAATCAGGCATCCAGCCAGCAAATAAATGGCGACGCTATGCCAGTTCCCGGCAAAGTAAGTGATGAGTGCAGCGGCAATAAAAGGTGTAAATCCACCGCCAACCACACTGGCAACCTGATAACCGACTCCAGCGCCACTATAGCGATAACTGGCACCAAACATTTCG
      +>scaffold_520
       GGCGGTAATAACGGCTTCTTCCTGCTGAGTTTTCATCAGGTTGATAATTTCGGCTGCCGTTCTCACGCCGCCCATTTTGCTGCGCTTGAGATTCTGACCGTCGAGCAAGCCATTCAGTACTTCGGTCAGCTCCGCCAGCGCGGCTGGCTGCACGCCGCCAAAGGTGGCGATACGCAACATCACGTCGTGGCGCAGACGTTCATCGAACAACGCCAGAATATCGGCGGCTTGGGCGCGCTTCAGATGCACCAGAATGGTGGCGATAATTTGCGGATGCTCATCGCGAATCAGATCGGCGGC
      ->scaffold_520
      -TTCCATACAATTACCGCACATCCGATAGTATGTCACAGAAATGTGAAACAAAAGTGTAAGGCGAAGATCGGATGATCTTCGCCAGGCTATCAAGCGCGTTGACTGTCTTTCATCAACAAAGCGGTCATTGCGGAAATCAGGCATCCAGCCAGCAAATAAATGGCGACGCTATGCCAGTTCCCGGCAAAGTAAGTGATGAGTGCAGCGGCAATAAAAGGTGTAAATCCACCGCCAACCACACTGGCAACCTGATAACCGACTCCAGCGCCACTATAGCGATAACTGGCACCAAACATTTCG
       >scaffold_521
      -TAAGGCGGCGGCAATGAGCATCAATATAATGATGGGTGCGGAAGGCGAGGTTTTTGCCCACGTCAGGCCGTTGAGCGATCCGGCATTCCACAAACCTGCTGTTAGCGCCGTTTCTAAAGACGCTTTCAGCAACAGCCAGGTATTAAAGGCCACCAGCATGGCGCGAACGCCGATACCGATAATAATCAACCGAAAGGTGTCGATGCCGTTGCGCCAGGCGAGCAGCCAGACCAGCAGCGAAGTGACAATGCCGCCCACCATTGCTGACAGCGCGATAGCCGTCAGGTCCTGACCAAACA
      +GATCATGTTATCAGGGTGGGGCGGTAGCGTATATTCCTTATACAAACCATCATTCATTTCAATGATTGTTATTGAATTATTTATTGTTGTGAATAAAAAGACATTATGAATATTGGTTTGACTTTGCATATCAGGTTTTTTATTACTCGCTGTAATGTACGAGCCTGTCGTGAATAACGTCGAGAACCCATCCGTTGCGTTTGTGATTATTTTGTTGACTAAACAGACACCCGTTTCTCTGAAGTAAAATCCCAGACAAATCATCACATAACCATGACATTTTTCTGATATTCCCCGGT
       >scaffold_522
       GTTTAACGGTAACGGTGTCCCGAAACGAACCCGTTTCGGGACAATTTCCAAAGTCTGTTCACTGGCATTAGCAACGGAAAATATTGTTCTGAATACGCTTCAGAACAAAACAGGTGCGGTTCCGACAGGAATACCGTTTTAGGGGGATAATATGGCTACATCAGTACAGACAGGTAAAGCTAAGCAGCTCACATTACTTGGATTCTTTGCCATAACGGCATCGATGGTAATGGCTGTTTATGAATACCCTACCTTCGCAACATCGGGCTTTTCATTAGTCTTCTTCCTGCTATTAGGCG
       >scaffold_523
      -ATTTCCTGAAGAGCCTCTGGATGTGGTCATTGGAAGAGCGGACCGGGCAATGTATGAGGGTAAGCAAACCGGAAGAAATCGCTGCATGTTTATTGACGAACAAAATGTGATTAACCGAGTTTAAGCTCCGTTTAACATTCATTGAGAAAACTGATGCTACTGTGTCAACGATTCGTTATCAGTGCAGGAAAATGCCTGTTAGCGTAAAAGCAAAACACAAATCTATCCATGCAAGCATTCACCGCCGGTTTACTGGCGGTTTTTTTTCGCCGTCATAAAAATCAGGCCCCTTGTACACA
      +TGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCTTAAACTCGGTTAATCACATTTTGTTCGTCAATAAACATGCAGCGATTTCTTCCGGTTTGCTTACCCTCATACATTGCCCGGTCCGCTCTTCCAATGACCACATCCAGAGGCTCTTCAGGAAAT
       >scaffold_524
      -ACCGGGGAATATCAGAAAAATGTCATGGTTATGTGATGATTTGTCTGGGATTTTACTTCAGAGAAACGGGTGTCTGTTTAGTCAACAAAATAATCACAAACGCAACGGATGGGTTCTCGACGTTATTCACGACAGGCTCGTACATTACAGCGAGTAATAAAAAACCTGATATGCAAAGTCAAACCAATATTCATAATGTCTTTTTATTCACAACAATAAATAATTCAATAACAATCATTGAAATGAATGATGGTTTGTATAAGGAATATACGCTACCGCCCCACCCTGATAACATGATC
      +TGTTTGGTCAGGACCTGACGGCTATCGCGCTGTCAGCAATGGTGGGCGGCATTGTCACTTCGCTGCTGGTCTGGCTGCTCGCCTGGCGCAACGGCATCGACACCTTTCGGTTGATTATTATCGGTATCGGCGTTCGCGCCATGCTGGTGGCCTTTAATACCTGGCTGTTGCTGAAAGCGTCTTTAGAAACGGCGCTAACAGCAGGTTTGTGGAATGCCGGATCGCTCAACGGCCTGACGTGGGCAAAAACCTCGCCTTCCGCACCCATCATTATATTGATGCTCATTGCCGCCGCCTTA
      
      

    Command Line:

    Exit Code:

    • 0

    Standard Error:

    • ==== MaxBin2 stderr ====
      sh: line 1: 47630 Segmentation fault      (core dumped) idba_ud -r out.reads.002 -o out.tmp --pre_correction --num_threads 6 > out.idba.out 2> out.idba.err
      ==== IDBA stderr ====
      

    Standard Output:

    • ==== MaxBin2 stdout ====
      MaxBin 2.2.7
      Input contig: /corral4/main/objects/9/9/3/dataset_99350127-7194-4aa0-bedc-ce97ddf9ff75.dat
      out header: out
      Reassembly: 1
      Thread: 6
      Located reads file [/corral4/main/objects/0/4/1/dataset_04162656-f717-43cd-9579-c59b4574c805.dat]
      Running Bowtie2 on reads file [/corral4/main/objects/0/4/1/dataset_04162656-f717-43cd-9579-c59b4574c805.dat]...this may take a while...
      Reading SAM file to estimate abundance values...
      Searching against 107 marker genes to find starting seed contigs for [/corral4/main/objects/9/9/3/dataset_99350127-7194-4aa0-bedc-ce97ddf9ff75.dat]...
      Running FragGeneScan....
      Running HMMER hmmsearch....
      Try harder to dig out marker genes from contigs.
      Done data collection. Running MaxBin...
      Command: /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.reads.abund1 -seed out.seed -out out -min_contig_length 1000 -thread 6
      Minimum contig length set to 1000.
      Reading seed list...
      Looking for seeds in sequences.
      	contig-201_2 [2.848706]
      	contig-201_100 [2.993483]
      Get 2 seeds.
      
      Start EM process.
      Iteration 1
      Iteration 2
      Iteration 3
      Iteration 4
      Iteration 5
      Iteration 6
      Iteration 7
      Iteration 8
      Iteration 9
      Iteration 10
      Iteration 11
      Iteration 12
      Iteration 13
      Iteration 14
      
      EM finishes successfully.
      
      Classifying sequences based on the EM result.
      Minimum probability for binning: 0.50
      Ignoring 0 bins without any sequences.
      Number of unclassified sequences: 0 (0.00%)
      Elapsed time:  0 days 00:00:00
      
      Performing reassembly. Reads file found.
      Separating reads according to the bins...
      Reading sam file out.sam0...
      Reading reads file /corral4/main/objects/0/4/1/dataset_04162656-f717-43cd-9579-c59b4574c805.dat...
      Reassembling bin 001
      Command: idba_ud -r out.reads.001 -o out.tmp --pre_correction --num_threads 6 1>out.idba.out 2>out.idba.err
      Placing reassembled contigs into out.reassem
      cp out.tmp/scaffold.fa out.reassem/out.001.fasta
      Reassembling bin 002
      Command: idba_ud -r out.reads.002 -o out.tmp --pre_correction --num_threads 6 1>out.idba.out 2>out.idba.err
      Placing reassembled contigs into out.reassem
      cp out.tmp/scaffold.fa out.reassem/out.002.fasta
      out.001.marker.fasta
      Deleting intermediate files.
      
      
      ========== Job finished ==========
      Yielded 2 bins for contig (scaffold) file /corral4/main/objects/9/9/3/dataset_99350127-7194-4aa0-bedc-ce97ddf9ff75.dat
      
      Here are the output files for this run.
      Please refer to the README file for further details.
      
      Summary file: out.summary
      Marker counts: out.marker
      Marker genes for each bin: out.marker_of_each_gene.tar.gz
      Bin files: out.001.fasta - out.002.fasta
      Unbinned sequences: out.noclass
      
      Store abundance information of reads file [/corral4/main/objects/0/4/1/dataset_04162656-f717-43cd-9579-c59b4574c805.dat] in [out.abund1].
      
      
      ========== Elapsed Time ==========
      0 hours 0 minutes and 31 seconds.
      
      ==== IDBA stdout ====
      number of threads 6
      reads 5310
      long reads 0
      extra reads 0
      read_length 93
      kmer 60
      kmers 50115 49096
      merge bubble 0
      contigs: 11 n50: 297 max: 440 mean: 308 total length: 3388 n80: 262
      aligned 118 reads
      confirmed bases: 1314 correct reads: 22 bases: 0
      kmer 20
      kmers 124468 123767
      merge bubble 1
      contigs: 256 n50: 365 max: 1238 mean: 312 total length: 80098 n80: 267
      aligned 2264 reads
      confirmed bases: 17171 correct reads: 148 bases: 0
      distance mean 1000 sd 0
      seed contigs 205 local contigs 512
      kmer 40
      kmers 76005 75770
      merge bubble 0
      contigs: 188 n50: 394 max: 1309 mean: 392 total length: 73706 n80: 296
      aligned 2180 reads
      confirmed bases: 16693 correct reads: 149 bases: 0
      distance mean 1000 sd 0
      seed contigs 184 local contigs 376
      kmer 60
      kmers 64586 64395
      merge bubble 0
      contigs: 164 n50: 402 max: 1760 mean: 419 total length: 68753 n80: 314
      aligned 2047 reads
      confirmed bases: 15851 correct reads: 135 bases: 0
      distance mean 1000 sd 0
      seed contigs 164 local contigs 328
      kmer 80
      kmers 56089 55925
      merge bubble 0
      contigs: 149 n50: 414 max: 1760 mean: 434 total length: 64731 n80: 330
      aligned 1956 reads
      confirmed bases: 15250 correct reads: 133 bases: 0
      distance mean 1000 sd 0
      seed contigs 149 local contigs 298
      kmer 100
      kmers 50010 49861
      merge bubble 0
      contigs: 126 n50: 438 max: 1760 mean: 461 total length: 58097 n80: 350
      reads 5310
      aligned 1787 reads
      distance mean 1000 sd 0
      expected coverage 0.038426
      

    Traceback:

    Job Parameters:

    • Job parameter Parameter value
      intype_cond {"__current_case__": 0, "intype_select": "rds", "output_abundances": false, "reads": {"values": [{"id": 113238744, "src": "hda"}]}, "reassembly": true}
      adv_cond {"__current_case__": 0, "adv_select": "no"}
      __job_resource {"__current_case__": 0, "__job_resource__select": "no"}
      chromInfo "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
      dbkey "?"
      __input_ext "fasta"
Passed s
  • ✅ toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2 (Test tool test #1)

    Command Line:

    Exit Code:

    • 0

    Standard Output:

    • MaxBin 2.2.7
      Input contig: /corral4/main/objects/9/9/3/dataset_99350127-7194-4aa0-bedc-ce97ddf9ff75.dat
      out header: out
      Thread: 6
      Located reads file [/corral4/main/objects/0/4/1/dataset_04162656-f717-43cd-9579-c59b4574c805.dat]
      Running Bowtie2 on reads file [/corral4/main/objects/0/4/1/dataset_04162656-f717-43cd-9579-c59b4574c805.dat]...this may take a while...
      Reading SAM file to estimate abundance values...
      Searching against 107 marker genes to find starting seed contigs for [/corral4/main/objects/9/9/3/dataset_99350127-7194-4aa0-bedc-ce97ddf9ff75.dat]...
      Running FragGeneScan....
      Running HMMER hmmsearch....
      Try harder to dig out marker genes from contigs.
      Done data collection. Running MaxBin...
      Command: /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.reads.abund1 -seed out.seed -out out -min_contig_length 1000 -thread 6
      Minimum contig length set to 1000.
      Reading seed list...
      Looking for seeds in sequences.
      	contig-201_2 [2.848706]
      	contig-201_100 [2.993483]
      Get 2 seeds.
      
      Start EM process.
      Iteration 1
      Iteration 2
      Iteration 3
      Iteration 4
      Iteration 5
      Iteration 6
      Iteration 7
      Iteration 8
      Iteration 9
      Iteration 10
      Iteration 11
      Iteration 12
      Iteration 13
      Iteration 14
      
      EM finishes successfully.
      
      Classifying sequences based on the EM result.
      Minimum probability for binning: 0.50
      Ignoring 0 bins without any sequences.
      Number of unclassified sequences: 0 (0.00%)
      Elapsed time:  0 days 00:00:00
      
      out.001.marker.fasta
      Deleting intermediate files.
      
      
      ========== Job finished ==========
      Yielded 2 bins for contig (scaffold) file /corral4/main/objects/9/9/3/dataset_99350127-7194-4aa0-bedc-ce97ddf9ff75.dat
      
      Here are the output files for this run.
      Please refer to the README file for further details.
      
      Summary file: out.summary
      Marker counts: out.marker
      Marker genes for each bin: out.marker_of_each_gene.tar.gz
      Bin files: out.001.fasta - out.002.fasta
      Unbinned sequences: out.noclass
      
      Store abundance information of reads file [/corral4/main/objects/0/4/1/dataset_04162656-f717-43cd-9579-c59b4574c805.dat] in [out.abund1].
      
      
      ========== Elapsed Time ==========
      0 hours 0 minutes and 6 seconds.
      
      

    Traceback:

    Job Parameters:

    • Job parameter Parameter value
      intype_cond {"__current_case__": 0, "intype_select": "rds", "output_abundances": false, "reads": {"values": [{"id": 113238744, "src": "hda"}]}, "reassembly": false}
      adv_cond {"__current_case__": 0, "adv_select": "no"}
      __job_resource {"__current_case__": 0, "__job_resource__select": "no"}
      chromInfo "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
      dbkey "?"
      __input_ext "fasta"
  • ✅ toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2 (Test Test Prokka 1.14.6+galaxy1 #3)

    Command Line:

    Exit Code:

    • 0

    Standard Error:

    • Attaching package: 'gplots'
      
      The following object is masked from 'package:stats':
      
          lowess
      
      

    Standard Output:

    • MaxBin 2.2.7
      Input contig: /corral4/main/objects/9/9/3/dataset_99350127-7194-4aa0-bedc-ce97ddf9ff75.dat
      out header: out
      Min contig length: 500
      Max iteration: 10
      Probability threshold: 0.95
      Thread: 6
      Located abundance file [/corral4/main/objects/e/5/f/dataset_e5f7dea2-27d0-440e-b8bc-a252a7c158af.dat]
      Searching against 107 marker genes to find starting seed contigs for [/corral4/main/objects/9/9/3/dataset_99350127-7194-4aa0-bedc-ce97ddf9ff75.dat]...
      Running FragGeneScan....
      Running HMMER hmmsearch....
      Try harder to dig out marker genes from contigs.
      Done data collection. Running MaxBin...
      Command: /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.abund1 -seed out.seed -out out -min_contig_length 500 -max_run 10 -prob_threshold 0.95 -thread 6
      Minimum contig length set to 500.
      Reading seed list...
      Looking for seeds in sequences.
      	contig-201_2 [11.293216]
      	contig-201_100 [10.048304]
      Get 2 seeds.
      
      Start EM process.
      Iteration 1
      Iteration 2
      Iteration 3
      Iteration 4
      Iteration 5
      Iteration 6
      Iteration 7
      Iteration 8
      Iteration 9
      Iteration 10
      
      EM finishes successfully.
      
      Classifying sequences based on the EM result.
      Minimum probability for binning: 0.95
      Ignoring 0 bins without any sequences.
      Number of unclassified sequences: 23 (9.75%)
      Elapsed time:  0 days 00:00:00
      
      Rscript /cvmfs/main.galaxyproject.org/deps/_conda/envs/[email protected]/opt/MaxBin-2.2.7/heatmap.r out.marker out.marker.pdf
      null device 
                1 
      out.001.marker.fasta
      Deleting intermediate files.
      
      
      ========== Job finished ==========
      Yielded 2 bins for contig (scaffold) file /corral4/main/objects/9/9/3/dataset_99350127-7194-4aa0-bedc-ce97ddf9ff75.dat
      
      Here are the output files for this run.
      Please refer to the README file for further details.
      
      Summary file: out.summary
      Marker counts: out.marker
      Marker genes for each bin: out.marker_of_each_gene.tar.gz
      Bin files: out.001.fasta - out.002.fasta
      Unbinned sequences: out.noclass
      Marker plot: out.marker.pdf
      
      
      ========== Elapsed Time ==========
      0 hours 0 minutes and 5 seconds.
      
      

    Traceback:

    Job Parameters:

    • Job parameter Parameter value
      intype_cond {"__current_case__": 1, "abund": {"values": [{"id": 113238741, "src": "hda"}]}, "intype_select": "abdc"}
      adv_cond {"__current_case__": 1, "adv_select": "yes", "markerset": "107", "max_iteration": "10", "min_contig_length": "500", "output_log": false, "output_marker": false, "output_markers": false, "plotmarker": true, "prob_threshold": "0.95"}
      __job_resource {"__current_case__": 0, "__job_resource__select": "no"}
      chromInfo "/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
      dbkey "?"
      __input_ext "fasta"

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