Test ncbi_makeblastdb 2.10.1+galaxy2 2.10.1+galaxy1 2.10.1+galaxy0

[jennaj]

toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/2.10.1+galaxy2
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/2.10.1+galaxy1
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/2.10.1+galaxy0

[jennaj]

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/2.10.1+galaxy2

[mvdbeek]

Results (powered by Planemo)

Summary

State	Count
Total	4
Passed	0
Error	4
Failure	0
Skipped	0

Errored s

• ❌ toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb (Test tool test #1)

  Execution Problem:

  • Input staging problem: Test input file (four_human_proteins.fasta) cannot be found.
    

• ❌ toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb (Test test against test.galaxyproject.org #2)

  Execution Problem:

  • Input staging problem: Test input file (four_human_proteins.fasta) cannot be found.
    

• ❌ toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb (Test Test Prokka 1.14.6+galaxy1 #3)

  Execution Problem:

  • Input staging problem: Test input file (four_human_proteins.fasta) cannot be found.
    

• ❌ toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb (Test Test roary 3.13.0+galaxy2 #4)

  Execution Problem:

  • Input staging problem: Test input file (three_human_mRNA.fasta.gz) cannot be found.
    

[jennaj]

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/2.10.1+galaxy1

[mvdbeek]

Results (powered by Planemo)

Summary

State	Count
Total	4
Passed	0
Error	4
Failure	0
Skipped	0

Errored s

• ❌ toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb (Test tool test #1)

  Execution Problem:

  • Input staging problem: Test input file (four_human_proteins.fasta) cannot be found.
    

• ❌ toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb (Test test against test.galaxyproject.org #2)

  Execution Problem:

  • Input staging problem: Test input file (four_human_proteins.fasta) cannot be found.
    

• ❌ toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb (Test Test Prokka 1.14.6+galaxy1 #3)

  Execution Problem:

  • Input staging problem: Test input file (four_human_proteins.fasta) cannot be found.
    

• ❌ toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb (Test Test roary 3.13.0+galaxy2 #4)

  Execution Problem:

  • Input staging problem: Test input file (three_human_mRNA.fasta.gz) cannot be found.
    

[jennaj]

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/2.10.1+galaxy2

[mvdbeek]

Results (powered by Planemo)

Summary

State	Count
Total	4
Passed	0
Error	4
Failure	0
Skipped	0

Errored s

• ❌ toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb (Test tool test #1)

  Execution Problem:

  • Input staging problem: Test input file (four_human_proteins.fasta) cannot be found.
    

• ❌ toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb (Test test against test.galaxyproject.org #2)

  Execution Problem:

  • Input staging problem: Test input file (four_human_proteins.fasta) cannot be found.
    

• ❌ toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb (Test Test Prokka 1.14.6+galaxy1 #3)

  Execution Problem:

  • Input staging problem: Test input file (four_human_proteins.fasta) cannot be found.
    

• ❌ toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb (Test Test roary 3.13.0+galaxy2 #4)

  Execution Problem:

  • Input staging problem: Test input file (three_human_mRNA.fasta.gz) cannot be found.
    

[jennaj]

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/2.10.1+galaxy2

[mvdbeek]

Results (powered by Planemo)

Summary

State	Count
Total	4
Passed	0
Error	4
Failure	0
Skipped	0

Errored s

• ❌ toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb (Test tool test #1)

  Execution Problem:

  • Input staging problem: Test input file (four_human_proteins.fasta) cannot be found.
    

• ❌ toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb (Test test against test.galaxyproject.org #2)

  Execution Problem:

  • Input staging problem: Test input file (four_human_proteins.fasta) cannot be found.
    

• ❌ toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb (Test Test Prokka 1.14.6+galaxy1 #3)

  Execution Problem:

  • Input staging problem: Test input file (four_human_proteins.fasta) cannot be found.
    

• ❌ toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb (Test Test roary 3.13.0+galaxy2 #4)

  Execution Problem:

  • Input staging problem: Test input file (three_human_mRNA.fasta.gz) cannot be found.
    

[jennaj]

makeblastdb (only) is failing with what looks like a config problem.

All these makeblastdb went to roundup: https://usegalaxy.org/u/jen/h/test-makeblastdb
Cross-checked, makeblastdb errors at Linux c408-114.stampede2.tacc.utexas.edu too: https://usegalaxy.org/u/jenhjackson/h/imported-test-makeblastdb

[natefoo]

There was no container built for the combination of dependencies, I've created a PR to build one at BioContainers/multi-package-containers#2296

[natefoo]

Took a while to get it trickled down to CVMFS but this should work now. I reran one of the failures in your history and it worked.