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Test spades 3.12.0+galaxy1 and 3.15.3+galaxy2 #25

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jennaj opened this issue Mar 8, 2022 · 8 comments
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Test spades 3.12.0+galaxy1 and 3.15.3+galaxy2 #25

jennaj opened this issue Mar 8, 2022 · 8 comments

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@jennaj
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jennaj commented Mar 8, 2022

Reported issue with the tool. Not obvious what is going wrong.

toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1
@jennaj
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jennaj commented Mar 8, 2022

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1

@mvdbeek mvdbeek mentioned this issue Mar 9, 2022
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@jennaj
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jennaj commented Mar 9, 2022

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1

@mvdbeek
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mvdbeek commented Mar 9, 2022

Results (powered by Planemo)

Summary

State Count
Total 8
Passed 0
Error 8
Failure 0
Skipped 0
Errored s
  • ❌ toolshed.g2.bx.psu.edu/repos/nml/spades/spades (Test tool test #1)

    Execution Problem:

    • Input staging problem: Test input file (ecoli_1K_1.fq) cannot be found.
  • ❌ toolshed.g2.bx.psu.edu/repos/nml/spades/spades (Test test against test.galaxyproject.org #2)

    Execution Problem:

    • Input staging problem: Test input file (ecoli_1K_1.fasta) cannot be found.
  • ❌ toolshed.g2.bx.psu.edu/repos/nml/spades/spades (Test Test Prokka 1.14.6+galaxy1 #3)

    Execution Problem:

    • Input staging problem: Test input file (ecoli_1K_1.fq.gz) cannot be found.
  • ❌ toolshed.g2.bx.psu.edu/repos/nml/spades/spades (Test Test roary 3.13.0+galaxy2 #4)

    Execution Problem:

    • Input staging problem: Test input file (ecoli_1K_1.fq) cannot be found.
  • ❌ toolshed.g2.bx.psu.edu/repos/nml/spades/spades (Test Test toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/3.5+galaxy1 #5)

    Execution Problem:

    • Input staging problem: Test input file (ecoli_1K_1.fq) cannot be found.
  • ❌ toolshed.g2.bx.psu.edu/repos/nml/spades/spades (Test Test trinotate 3.2.2+galaxy0 #6)

    Execution Problem:

    • Input staging problem: Test input file (ecoli_1K_1.fq) cannot be found.
  • ❌ toolshed.g2.bx.psu.edu/repos/nml/spades/spades (Test Test pangolin 3.1.17+galaxy1 #7)

    Execution Problem:

    • Input staging problem: Test input file (ecoli_1K_1.fq) cannot be found.
  • ❌ toolshed.g2.bx.psu.edu/repos/nml/spades/spades (Test Test SEACR 1.3+galaxy1 on usegalaxy.org #8)

    Execution Problem:

    • Input staging problem: Test input file (ecoli_1K_1.fq.gz) cannot be found.

@jennaj
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jennaj commented Mar 11, 2022

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1

@mvdbeek
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mvdbeek commented Mar 11, 2022

Results (powered by Planemo)

Summary

State Count
Total 8
Passed 0
Error 8
Failure 0
Skipped 0
Errored s
  • ❌ toolshed.g2.bx.psu.edu/repos/nml/spades/spades (Test tool test #1)

    Execution Problem:

    • Input staging problem: Test input file (ecoli_1K_1.fq) cannot be found.
  • ❌ toolshed.g2.bx.psu.edu/repos/nml/spades/spades (Test test against test.galaxyproject.org #2)

    Execution Problem:

    • Input staging problem: Test input file (ecoli_1K_1.fasta) cannot be found.
  • ❌ toolshed.g2.bx.psu.edu/repos/nml/spades/spades (Test Test Prokka 1.14.6+galaxy1 #3)

    Execution Problem:

    • Input staging problem: Test input file (ecoli_1K_1.fq.gz) cannot be found.
  • ❌ toolshed.g2.bx.psu.edu/repos/nml/spades/spades (Test Test roary 3.13.0+galaxy2 #4)

    Execution Problem:

    • Input staging problem: Test input file (ecoli_1K_1.fq) cannot be found.
  • ❌ toolshed.g2.bx.psu.edu/repos/nml/spades/spades (Test Test toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/3.5+galaxy1 #5)

    Execution Problem:

    • Input staging problem: Test input file (ecoli_1K_1.fq) cannot be found.
  • ❌ toolshed.g2.bx.psu.edu/repos/nml/spades/spades (Test Test trinotate 3.2.2+galaxy0 #6)

    Execution Problem:

    • Input staging problem: Test input file (ecoli_1K_1.fq) cannot be found.
  • ❌ toolshed.g2.bx.psu.edu/repos/nml/spades/spades (Test Test pangolin 3.1.17+galaxy1 #7)

    Execution Problem:

    • Input staging problem: Test input file (ecoli_1K_1.fq) cannot be found.
  • ❌ toolshed.g2.bx.psu.edu/repos/nml/spades/spades (Test Test SEACR 1.3+galaxy1 on usegalaxy.org #8)

    Execution Problem:

    • Input staging problem: Test input file (ecoli_1K_1.fq.gz) cannot be found.

@jennaj
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jennaj commented Jun 24, 2022

toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.15.3+galaxy2

@jennaj jennaj changed the title Test spades 3.12.0+galaxy1 Test spades 3.12.0+galaxy1 and 3.15.3+galaxy2 Jun 24, 2022
@jennaj
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jennaj commented Jun 24, 2022

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.15.3+galaxy2

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@jennaj
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jennaj commented Jun 27, 2022

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.15.3+galaxy2

@mvdbeek mvdbeek mentioned this issue Nov 10, 2022
Closed
@jennaj jennaj closed this as completed Jun 12, 2023
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