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Test ebi_search_rest_results 0.1.1 #14

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jennaj opened this issue Feb 9, 2022 · 12 comments
Closed

Test ebi_search_rest_results 0.1.1 #14

jennaj opened this issue Feb 9, 2022 · 12 comments

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@jennaj
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jennaj commented Feb 9, 2022 •
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Reported failure at .org: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1

That is the most current version of the tool in the MTS: https://toolshed.g2.bx.psu.edu/repository?repository_id=3dbb223c1d6a210d
@jennaj
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jennaj commented Feb 9, 2022

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1

@jennaj jennaj mentioned this issue Feb 9, 2022
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@mvdbeek
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mvdbeek commented Feb 9, 2022

Results (powered by Planemo)

Summary

State Count
Total 3
Passed 0
Error 0
Failure 3
Skipped 0
Failed s
  • ❌ toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results (Test tool test #1)

    Problems:

    • Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

    • Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

    Command Line:

    • 

      • 

    

    Exit Code:
    

      

    • 

      1
      

      • 

    

    Standard Error:
    

      

    • 

      Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 

      

      • 

    

    Job Parameters:
    

      

    • 

      


      
Job parameter
Parameter value

      
      


      
searched_domain
{"__current_case__": 69, "domain": "metagenomics_runs", "fields": ["id", "experiment_type"], "queries": [{"__index__": 0, "combination_operation": "AND", "comp_operation": {"__current_case__": 0, "operation": "equal", "query_text": "gut"}, "query_field": "biome"}]}

      

      
chromInfo
"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"

      

      
dbkey
"?"

      

      
__input_ext
"data"

      
      

      

      • 

    

    

    • 

  • 

    ❌ toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results (Test test against test.galaxyproject.org #2)
    

    Problems:
    

      

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    

    Command Line:
    

      

    • 

      

      • 

    

    Exit Code:
    

      

    • 

      1
      

      • 

    

    Standard Error:
    

      

    • 

      Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 

      

      • 

    

    Job Parameters:
    

      

    • 

      


      
Job parameter
Parameter value

      
      


      
searched_domain
{"__current_case__": 69, "domain": "metagenomics_runs", "fields": ["id", "experiment_type"], "queries": [{"__index__": 0, "combination_operation": "AND", "comp_operation": {"__current_case__": 1, "not_query_text": "microb", "operation": "not", "query_text": "cheese"}, "query_field": "project_name"}]}

      

      
chromInfo
"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"

      

      
dbkey
"?"

      

      
__input_ext
"data"

      
      

      

      • 

    

    

    • 

  • 

    ❌ toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results (Test Test Prokka 1.14.6+galaxy1 #3)
    

    Problems:
    

      

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    

    Command Line:
    

      

    • 

      

      • 

    

    Exit Code:
    

      

    • 

      1
      

      • 

    

    Standard Error:
    

      

    • 

      Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 

      

      • 

    

    Job Parameters:
    

      

    • 

      


      
Job parameter
Parameter value

      
      


      
searched_domain
{"__current_case__": 69, "domain": "metagenomics_runs", "fields": ["id", "experiment_type"], "queries": [{"__index__": 0, "combination_operation": "AND", "comp_operation": {"__current_case__": 0, "operation": "equal", "query_text": "marine"}, "query_field": "biome"}, {"__index__": 1, "combination_operation": "AND", "comp_operation": {"__current_case__": 2, "max": "200", "min": "0", "operation": "range"}, "query_field": "depth"}]}

      

      
chromInfo
"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"

      

      
dbkey
"?"

      

      
__input_ext
"data"

      
      

      

      • 

    

    

    • 




      		
    

  





        


            

            

              
            

        

      


      

            
  

    
  
    
    

  

  



    












      

  
      



  

  @jennaj





  


    

      

  

    

        
    
    

  


      
          
  
      
            Copy link

  

      
    

  


  

      

  
    Collaborator


      

  Author


  


  

    

      

      
            jennaj
  

      

      

      commented


        Feb 14, 2022


      
    


  





      


        


  
    

      
          
/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1

      		
    

  





        


            

            

              
            

        

      


      

            
  

    
  
    
    

  

  



    












      

  
      



  

  @mvdbeek





  


    

      

  

    

        
    
    

  


      
          
  
      
            Copy link

  

      
    

  


  

      

  
    Owner


      

  


  

    

      

      
            mvdbeek
  

      

      

      commented


        Feb 14, 2022


      
    


  





      


        


  
    

      
          
Results (powered by Planemo)


Summary



  

  

  

  

  

  








State
Count






Total
3




Passed
0




Error
0




Failure
3




Skipped
0






Failed s

    

  • 

    ❌ toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results (Test tool test #1)
    

    Problems:
    

      

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    

    Command Line:
    

      

    • 

      

      • 

    

    Exit Code:
    

      

    • 

      1
      

      • 

    

    Standard Error:
    

      

    • 

      Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 

      

      • 

    

    Job Parameters:
    

      

    • 

      


      
Job parameter
Parameter value

      
      


      
searched_domain
{"__current_case__": 69, "domain": "metagenomics_runs", "fields": ["id", "experiment_type"], "queries": [{"__index__": 0, "combination_operation": "AND", "comp_operation": {"__current_case__": 0, "operation": "equal", "query_text": "gut"}, "query_field": "biome"}]}

      

      
chromInfo
"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"

      

      
dbkey
"?"

      

      
__input_ext
"data"

      
      

      

      • 

    

    

    • 

  • 

    ❌ toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results (Test test against test.galaxyproject.org #2)
    

    Problems:
    

      

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    

    Command Line:
    

      

    • 

      

      • 

    

    Exit Code:
    

      

    • 

      1
      

      • 

    

    Standard Error:
    

      

    • 

      Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 

      

      • 

    

    Job Parameters:
    

      

    • 

      


      
Job parameter
Parameter value

      
      


      
searched_domain
{"__current_case__": 69, "domain": "metagenomics_runs", "fields": ["id", "experiment_type"], "queries": [{"__index__": 0, "combination_operation": "AND", "comp_operation": {"__current_case__": 1, "not_query_text": "microb", "operation": "not", "query_text": "cheese"}, "query_field": "project_name"}]}

      

      
chromInfo
"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"

      

      
dbkey
"?"

      

      
__input_ext
"data"

      
      

      

      • 

    

    

    • 

  • 

    ❌ toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results (Test Test Prokka 1.14.6+galaxy1 #3)
    

    Problems:
    

      

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    

    Command Line:
    

      

    • 

      

      • 

    

    Exit Code:
    

      

    • 

      1
      

      • 

    

    Standard Error:
    

      

    • 

      Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 

      

      • 

    

    Job Parameters:
    

      

    • 

      


      
Job parameter
Parameter value

      
      


      
searched_domain
{"__current_case__": 69, "domain": "metagenomics_runs", "fields": ["id", "experiment_type"], "queries": [{"__index__": 0, "combination_operation": "AND", "comp_operation": {"__current_case__": 0, "operation": "equal", "query_text": "marine"}, "query_field": "biome"}, {"__index__": 1, "combination_operation": "AND", "comp_operation": {"__current_case__": 2, "max": "200", "min": "0", "operation": "range"}, "query_field": "depth"}]}

      

      
chromInfo
"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"

      

      
dbkey
"?"

      

      
__input_ext
"data"

      
      

      

      • 

    

    

    • 




      		
    

  





        


            

            

              
            

        

      


      

            
  

    
  
    
    

  

  



    












      

  
          

  

    
  


  

      

    @mvdbeek
mvdbeek



    mentioned this issue
    
      Feb 24, 2022
    





  


  

      
  
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  @jennaj





  


    

      

  

    

        
    
    

  


      
          
  
      
            Copy link

  

      
    

  


  

      

  
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            jennaj
  

      

      

      commented


        Feb 25, 2022


      
    


  





      


        


  
    

      
          
/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1

      		
    

  





        


            

            

              
            

        

      


      

            
  

    
  
    
    

  

  



    












      

  
      



  

  @mvdbeek





  


    

      

  

    

        
    
    

  


      
          
  
      
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            mvdbeek
  

      

      

      commented


        Feb 25, 2022


      
    


  





      


        


  
    

      
          
Results (powered by Planemo)


Summary



  

  

  

  

  

  








State
Count






Total
3




Passed
0




Error
0




Failure
3




Skipped
0






Failed s

    

  • 

    ❌ toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results (Test tool test #1)
    

    Problems:
    

      

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    

    Command Line:
    

      

    • 

      

      • 

    

    Exit Code:
    

      

    • 

      1
      

      • 

    

    Standard Error:
    

      

    • 

      Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 

      

      • 

    

    Job Parameters:
    

      

    • 

      


      
Job parameter
Parameter value

      
      


      
searched_domain
{"__current_case__": 69, "domain": "metagenomics_runs", "fields": ["id", "experiment_type"], "queries": [{"__index__": 0, "combination_operation": "AND", "comp_operation": {"__current_case__": 0, "operation": "equal", "query_text": "gut"}, "query_field": "biome"}]}

      

      
chromInfo
"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"

      

      
dbkey
"?"

      

      
__input_ext
"data"

      
      

      

      • 

    

    

    • 

  • 

    ❌ toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results (Test test against test.galaxyproject.org #2)
    

    Problems:
    

      

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    

    Command Line:
    

      

    • 

      

      • 

    

    Exit Code:
    

      

    • 

      1
      

      • 

    

    Standard Error:
    

      

    • 

      Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 

      

      • 

    

    Job Parameters:
    

      

    • 

      


      
Job parameter
Parameter value

      
      


      
searched_domain
{"__current_case__": 69, "domain": "metagenomics_runs", "fields": ["id", "experiment_type"], "queries": [{"__index__": 0, "combination_operation": "AND", "comp_operation": {"__current_case__": 1, "not_query_text": "microb", "operation": "not", "query_text": "cheese"}, "query_field": "project_name"}]}

      

      
chromInfo
"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"

      

      
dbkey
"?"

      

      
__input_ext
"data"

      
      

      

      • 

    

    

    • 

  • 

    ❌ toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results (Test Test Prokka 1.14.6+galaxy1 #3)
    

    Problems:
    

      

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    

    Command Line:
    

      

    • 

      

      • 

    

    Exit Code:
    

      

    • 

      1
      

      • 

    

    Standard Error:
    

      

    • 

      Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 

      

      • 

    

    Job Parameters:
    

      

    • 

      


      
Job parameter
Parameter value

      
      


      
searched_domain
{"__current_case__": 69, "domain": "metagenomics_runs", "fields": ["id", "experiment_type"], "queries": [{"__index__": 0, "combination_operation": "AND", "comp_operation": {"__current_case__": 0, "operation": "equal", "query_text": "marine"}, "query_field": "biome"}, {"__index__": 1, "combination_operation": "AND", "comp_operation": {"__current_case__": 2, "max": "200", "min": "0", "operation": "range"}, "query_field": "depth"}]}

      

      
chromInfo
"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"

      

      
dbkey
"?"

      

      
__input_ext
"data"

      
      

      

      • 

    

    

    • 




      		
    

  





        


            

            

              
            

        

      


      

            
  

    
  
    
    

  

  



    












      

  
      



  

  @jennaj





  


    

      

  

    

        
    
    

  


      
          
  
      
            Copy link

  

      
    

  


  

      

  
    Collaborator


      

  Author


  


  

    

      

      
            jennaj
  

      

      

      commented


        Mar 8, 2022


      
    


  





      


        


  
    

      
          
/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1

      		
    

  





        


            

            

              
            

        

      


      

            
  

    
  
    
    

  

  



    












      

  
      



  

  @mvdbeek





  


    

      

  

    

        
    
    

  


      
          
  
      
            Copy link

  

      
    

  


  

      

  
    Owner


      

  


  

    

      

      
            mvdbeek
  

      

      

      commented


        Mar 8, 2022


      
    


  





      


        


  
    

      
          
Results (powered by Planemo)


Summary



  

  

  

  

  

  








State
Count






Total
3




Passed
0




Error
0




Failure
3




Skipped
0






Failed s

    

  • 

    ❌ toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results (Test tool test #1)
    

    Problems:
    

      

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    

    Command Line:
    

      

    • 

      

      • 

    

    Exit Code:
    

      

    • 

      1
      

      • 

    

    Standard Error:
    

      

    • 

      Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 

      

      • 

    

    Job Parameters:
    

      

    • 

      


      
Job parameter
Parameter value

      
      


      
searched_domain
{"__current_case__": 69, "domain": "metagenomics_runs", "fields": ["id", "experiment_type"], "queries": [{"__index__": 0, "combination_operation": "AND", "comp_operation": {"__current_case__": 0, "operation": "equal", "query_text": "gut"}, "query_field": "biome"}]}

      

      
chromInfo
"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"

      

      
dbkey
"?"

      

      
__input_ext
"data"

      
      

      

      • 

    

    

    • 

  • 

    ❌ toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results (Test test against test.galaxyproject.org #2)
    

    Problems:
    

      

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    

    Command Line:
    

      

    • 

      

      • 

    

    Exit Code:
    

      

    • 

      1
      

      • 

    

    Standard Error:
    

      

    • 

      Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 

      

      • 

    

    Job Parameters:
    

      

    • 

      


      
Job parameter
Parameter value

      
      


      
searched_domain
{"__current_case__": 69, "domain": "metagenomics_runs", "fields": ["id", "experiment_type"], "queries": [{"__index__": 0, "combination_operation": "AND", "comp_operation": {"__current_case__": 1, "not_query_text": "microb", "operation": "not", "query_text": "cheese"}, "query_field": "project_name"}]}

      

      
chromInfo
"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"

      

      
dbkey
"?"

      

      
__input_ext
"data"

      
      

      

      • 

    

    

    • 

  • 

    ❌ toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results (Test Test Prokka 1.14.6+galaxy1 #3)
    

    Problems:
    

      

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    

    Command Line:
    

      

    • 

      

      • 

    

    Exit Code:
    

      

    • 

      1
      

      • 

    

    Standard Error:
    

      

    • 

      Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 

      

      • 

    

    Job Parameters:
    

      

    • 

      


      
Job parameter
Parameter value

      
      


      
searched_domain
{"__current_case__": 69, "domain": "metagenomics_runs", "fields": ["id", "experiment_type"], "queries": [{"__index__": 0, "combination_operation": "AND", "comp_operation": {"__current_case__": 0, "operation": "equal", "query_text": "marine"}, "query_field": "biome"}, {"__index__": 1, "combination_operation": "AND", "comp_operation": {"__current_case__": 2, "max": "200", "min": "0", "operation": "range"}, "query_field": "depth"}]}

      

      
chromInfo
"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"

      

      
dbkey
"?"

      

      
__input_ext
"data"

      
      

      

      • 

    

    

    • 




      		
    

  





        


            

            

              
            

        

      


      

            
  

    
  
    
    

  

  



    












      

  
      



  

  @jennaj





  


    

      

  

    

        
    
    

  


      
          
  
      
            Copy link

  

      
    

  


  

      

  
    Collaborator


      

  Author


  


  

    

      

      
            jennaj
  

      

      

      commented


        Jun 24, 2022


      
    


  





      


        


  
    

      
          
toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1

      		
    

  





        


            

            

              
            

        

      


      

            
  

    
  
    
    

  

  



    












      

  
      



  

  @jennaj





  


    

      

  

    

        
    
    

  


      
          
  
      
            Copy link

  

      
    

  


  

      

  
    Collaborator


      

  Author


  


  

    

      

      
            jennaj
  

      

      

      commented


        Jun 24, 2022


      
    


  





      


        


  
    

      
          
/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1

      		
    

  





        


            

            

              
            

        

      


      

            
  

    
  
    
    

  

  



    












      

  
      



  

  @mvdbeek





  


    

      

  

    

        
    
    

  


      
          
  
      
            Copy link

  

      
    

  


  

      

  
    Owner


      

  


  

    

      

      
            mvdbeek
  

      

      

      commented


        Jun 24, 2022


      
    


  





      


        


  
    

      
          
Results (powered by Planemo)


Summary



  

  

  

  

  

  








State
Count






Total
3




Passed
0




Error
0




Failure
3




Skipped
0






Failed s

    

  • 

    ❌ toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results (Test tool test #1)
    

    Problems:
    

      

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    

    Command Line:
    

      

    • 

      

      • 

    

    Exit Code:
    

      

    • 

      1
      

      • 

    

    Standard Error:
    

      

    • 

      Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 

      

      • 

    

    Job Parameters:
    

      

    • 

      


      
Job parameter
Parameter value

      
      


      
searched_domain
{"__current_case__": 69, "domain": "metagenomics_runs", "fields": ["id", "experiment_type"], "queries": [{"__index__": 0, "combination_operation": "AND", "comp_operation": {"__current_case__": 0, "operation": "equal", "query_text": "gut"}, "query_field": "biome"}]}

      

      
chromInfo
"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"

      

      
dbkey
"?"

      

      
__input_ext
"data"

      
      

      

      • 

    

    

    • 

  • 

    ❌ toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results (Test test against test.galaxyproject.org #2)
    

    Problems:
    

      

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    

    Command Line:
    

      

    • 

      

      • 

    

    Exit Code:
    

      

    • 

      1
      

      • 

    

    Standard Error:
    

      

    • 

      Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 

      

      • 

    

    Job Parameters:
    

      

    • 

      


      
Job parameter
Parameter value

      
      


      
searched_domain
{"__current_case__": 69, "domain": "metagenomics_runs", "fields": ["id", "experiment_type"], "queries": [{"__index__": 0, "combination_operation": "AND", "comp_operation": {"__current_case__": 1, "not_query_text": "microb", "operation": "not", "query_text": "cheese"}, "query_field": "project_name"}]}

      

      
chromInfo
"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"

      

      
dbkey
"?"

      

      
__input_ext
"data"

      
      

      

      • 

    

    

    • 

  • 

    ❌ toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results (Test Test Prokka 1.14.6+galaxy1 #3)
    

    Problems:
    

      

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    • 

      Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1, exit_code: 1, stderr: Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 
.

      

      • 

    

    Command Line:
    

      

    • 

      

      • 

    

    Exit Code:
    

      

    • 

      1
      

      • 

    

    Standard Error:
    

      

    • 

      Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 309, in <module>
    getResults(args[1], args[2], args[3])
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 189, in getResults
    numberOfResults = getNumberOfResults(domain, query)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 172, in getNumberOfResults
    xmlDoc = restRequest(requestUrl)
  File "/cvmfs/main.galaxyproject.org/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/42d5e40fcd0b/ebi_search_rest_results/ebeye_urllib.py", line 94, in restRequest
    raise ex
urllib2.HTTPError: HTTP Error 400: 

      

      • 

    

    Job Parameters:
    

      

    • 

      


      
Job parameter
Parameter value

      
      


      
searched_domain
{"__current_case__": 69, "domain": "metagenomics_runs", "fields": ["id", "experiment_type"], "queries": [{"__index__": 0, "combination_operation": "AND", "comp_operation": {"__current_case__": 0, "operation": "equal", "query_text": "marine"}, "query_field": "biome"}, {"__index__": 1, "combination_operation": "AND", "comp_operation": {"__current_case__": 2, "max": "200", "min": "0", "operation": "range"}, "query_field": "depth"}]}

      

      
chromInfo
"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"

      

      
dbkey
"?"

      

      
__input_ext
"data"

      
      

      

      • 

    

    

    • 




      		
    

  





        


            

            

              
            

        

      


      

            
  

    
  
    
    

  

  



    












      

  
      



  

  @jennaj





  


    

      

  

    

        
    
    

  


      
          
  
      
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            jennaj
  

      

      

      commented


        Jun 27, 2022


      
    


  





      


        


  
    

      
          
/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1

      		
    

  





        


            

            

              
            

        

      


      

            
  

    
  
    
    

  

  



    












      

  
          

  

    
  


  

      

    @mvdbeek
mvdbeek



    mentioned this issue
    
      Nov 10, 2022
    





  


  

      
  
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          @jennaj
jennaj




            closed this as completed


      Jun 12, 2023

    

  


    











  
  

    

      

  





  




  
  

              

  
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          @mvdbeek 
        
          @jennaj