test_tool.yaml

name: Run tool test against galaxy server
on:
  repository_dispatch:
    types: [run-tool-test-command]
jobs:
  setup:
    name: Run test
    if: github.repository_owner == 'mvdbeek'
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: [3.7]
    steps:
    - name: Add reaction
      uses: peter-evans/create-or-update-comment@v1
      with:
        token: ${{ secrets.PAT }}
        repository: ${{ github.event.client_payload.github.payload.repository.full_name }}
        comment-id: ${{ github.event.client_payload.github.payload.comment.id }}
        reaction-type: hooray
    - uses: actions/setup-python@v1
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install galaxy-tool-util
      run: pip install 'galaxy-tool-util>=21.1.0.dev3' pysam
    - name: Install planemo
      run: git clone --recursive https://github.com/galaxyproject/planemo && pip install planemo/
    - name: Run tool test
      if: ${{  github.event.client_payload.slash_command.args.named.server != 'https://test.galaxyproject.org' }}
      run: galaxy-tool-test -u https://usegalaxy.org -k "${{ secrets.GALAXY_API_KEY }}" -t "${{github.event.client_payload.slash_command.args.named.tool_id}}" -j test_result.json --parallel-tests 10 --download-attempts 32 --download-sleep 2
    - name: Run tool test
      if: ${{ github.event.client_payload.slash_command.args.named.server == 'https://test.galaxyproject.org' }}
      run: galaxy-tool-test -u https://test.galaxyproject.org -k "${{ secrets.TEST_API_KEY }}" -t "${{github.event.client_payload.slash_command.args.named.tool_id}}" -j test_result.json --parallel-tests 10 --download-attempts 32 --download-sleep 2
    - name: Create test markdown report
      if: always()
      run: planemo test_reports test_result.json --test_output_markdown report.md
    - name: Read report
      if: always()
      id: report
      run: |
           body=$(cat report.md)
           body="${body//'%'/'%25'}"
           body="${body//$'\n'/'%0A'}"
           body="${body//$'\r'/'%0D'}"
           echo "::set-output name=markdown::$body"
    - name: Create comment
      if: always()
      uses: peter-evans/create-or-update-comment@v1
      with:
        token: ${{ secrets.PAT }}
        repository: ${{ github.event.client_payload.github.payload.repository.full_name }}
        issue-number: ${{ github.event.client_payload.github.payload.issue.number }}
        body: |
          ${{ steps.report.outputs.markdown }}