From 478ee176f4c1b763968c27808c02273b0b371541 Mon Sep 17 00:00:00 2001
From: Muhammad Kharisma Azhari <kharisma.azhari02@gmail.com>
Date: Tue, 3 Sep 2024 10:17:52 +0700
Subject: [PATCH] Update versions.

---
 .idea/autocode.iml         |  2 +-
 .idea/misc.xml             |  2 +-
 .idea/vcs.xml              |  5 +++++
 README.md                  |  2 +-
 benchmark/Dockerfile       | 31 ++++++++++++++++++-------------
 benchmark/requirements.txt | 12 +++++++-----
 setup.py                   | 13 +++++++------
 7 files changed, 40 insertions(+), 27 deletions(-)

diff --git a/.idea/autocode.iml b/.idea/autocode.iml
index 0f3f8f3..e6e696b 100644
--- a/.idea/autocode.iml
+++ b/.idea/autocode.iml
@@ -3,7 +3,7 @@
   <component name="Go" enabled="true" />
   <component name="NewModuleRootManager">
     <content url="file://$MODULE_DIR$" />
-    <orderEntry type="jdk" jdkName="/home/muazhari/miniconda3" jdkType="Python SDK" />
+    <orderEntry type="jdk" jdkName="Remote Python 3.12.3 (sftp://root@pc-3:22/usr/bin/python3)" jdkType="Python SDK" />
     <orderEntry type="sourceFolder" forTests="false" />
   </component>
 </module>
\ No newline at end of file
diff --git a/.idea/misc.xml b/.idea/misc.xml
index 4b769a4..347f8fd 100644
--- a/.idea/misc.xml
+++ b/.idea/misc.xml
@@ -3,5 +3,5 @@
   <component name="Black">
     <option name="sdkName" value="C:\ProgramData\Anaconda3" />
   </component>
-  <component name="ProjectRootManager" version="2" project-jdk-name="/home/muazhari/miniconda3" project-jdk-type="Python SDK" />
+  <component name="ProjectRootManager" version="2" project-jdk-name="Remote Python 3.12.3 (sftp://root@pc-3:22/usr/bin/python3)" project-jdk-type="Python SDK" />
 </project>
\ No newline at end of file
diff --git a/.idea/vcs.xml b/.idea/vcs.xml
index 35eb1dd..8d3e42f 100644
--- a/.idea/vcs.xml
+++ b/.idea/vcs.xml
@@ -1,5 +1,10 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <project version="4">
+  <component name="GitSharedSettings">
+    <option name="FORCE_PUSH_PROHIBITED_PATTERNS">
+      <list />
+    </option>
+  </component>
   <component name="VcsDirectoryMappings">
     <mapping directory="" vcs="Git" />
   </component>
diff --git a/README.md b/README.md
index a10284b..68d0a2b 100644
--- a/README.md
+++ b/README.md
@@ -9,7 +9,7 @@ Auto Code Improvement by Metrics Optimization.
 Autocode selects the best values for optimized metrics. The variable value types could be bool, int, float, and choice (including
 but not limited to code). This project utilizes a Large Language Model and Mixed-Variable Many-Objective Optimization.
 Based on our research/literature review, this project hypothetically can contribute to the economic performance of
-companies.
+companies.  
 
 ## Features
 
diff --git a/benchmark/Dockerfile b/benchmark/Dockerfile
index 8fa10a8..84fe245 100644
--- a/benchmark/Dockerfile
+++ b/benchmark/Dockerfile
@@ -3,25 +3,30 @@ FROM muazhari/cuda-torch-tensorflow:latest
 
 # Setup workdir.
 ENV WORKDIR=/workdir
-
 WORKDIR $WORKDIR
 
-# SSH server setup.
-RUN apt update -y
-
-RUN yes | DEBIAN_FRONTEND=noninteractive apt install -y \
+# Install apt dependencies.
+RUN --mount=type=cache,target=/var/cache/apt,sharing=locked \
+  --mount=type=cache,target=/var/lib/apt,sharing=locked \
+    apt-fast update -y \
+    && \
+    yes | apt-fast install -y \
     openssh-server \
     git
 
+# Setup sshd.
 RUN mkdir /var/run/sshd
-
 RUN echo 'root:root' | chpasswd
-
 RUN echo "PermitRootLogin yes" >> /etc/ssh/sshd_config
 
-# Setup dependencies.
-COPY requirements.txt .
-
-RUN pip3 install -r requirements.txt --use-feature=fast-deps --break-system-packages
-
-RUN pip3 install ray[default,tune] --use-feature=fast-deps --break-system-packages
+# Copy the requirements.txt file to the working directory.
+COPY ./requirements.txt ./requirements.txt
+
+# Install python dependencies from requirements.txt.
+RUN --mount=type=cache,target=/root/.cache/pip \
+    --mount=type=cache,target=/root/.cache/uv \
+    uv pip install --system \
+    ray[default,tune] \
+    -r requirements.txt \
+    --break-system-packages \
+    --no-build-isolation
diff --git a/benchmark/requirements.txt b/benchmark/requirements.txt
index 72ad0ea..8943b73 100644
--- a/benchmark/requirements.txt
+++ b/benchmark/requirements.txt
@@ -6,25 +6,27 @@ pytest-asyncio
 pytest-xdist
 pytest-cov
 
+gpy>=1.13.2
+pandas
 numba
 rexmex
 optuna
-pymoo
+pymoo @git+https://github.com/anyoptimization/pymoo@main
 pysamoo
 hebo
 ax-platform
 pydantic_settings
 fastapi
-dependency-injector>=4.42.0b1
+dependency-injector
 ray
 fastapi
-matplotlib<3.9.0
+matplotlib
 sqlmodel
 dill
 streamlit
-numpy>=1.26.4,<2
+numpy
 python-on-whales
 uvicorn
 langchain
-langchain-openai>=0.1.21rc1
+langchain-openai
 langgraph
\ No newline at end of file
diff --git a/setup.py b/setup.py
index 527deeb..6d581aa 100644
--- a/setup.py
+++ b/setup.py
@@ -7,7 +7,7 @@
 
 setup(
     name='autocode-py',
-    version='0.0.1.post9',
+    version='0.0.1.post10',
     author='muazhari',
     url='https://github.com/muazhari/autocode',
     description='autocode: Auto Code Improvement by Metrics Optimization.',
@@ -25,21 +25,22 @@
         'Topic :: Scientific/Engineering',
     ],
     install_requires=[
-        'pymoo@git+https://github.com/anyoptimization/pymoo.git',
+        'pymoo @ git+ssh://git@github.com/anyoptimization/pymoo.git',
         'pydantic_settings',
         'fastapi',
-        'dependency-injector>=4.42.0b1',
+        'pandas',
+        'dependency-injector',
         'ray',
         'fastapi',
-        'matplotlib<3.9.0',
+        'matplotlib',
         'sqlmodel',
         'dill',
         'streamlit',
-        'numpy>=1.26.4,<2',
+        'numpy',
         'python-on-whales',
         'uvicorn',
         'langchain',
-        'langchain-openai>=0.1.21rc1',
+        'langchain-openai',
         'langgraph',
     ],
 )