How to fill the missing data without including the background area （out of the sample）

[Brian-Liu-rx]

Hi, everyone,
I need to do the "filling the missing data " to my ebsd file, but it always makes the surface very strangle. How can we fill the missing data without including the background area?

Thanks!

[lfgmorales]

Hi Try to gridify the ebsd data before calculating grains like here, Basic Grain Reconstruction section cheers Luiz <https://mtex-toolbox.github.io/GrainReconstruction.html> Grain Reconstruction | MTEX<https://mtex-toolbox.github.io/GrainReconstruction.html> mtex-toolbox.github.io<https://mtex-toolbox.github.io/GrainReconstruction.html> [favicon.png] <https://mtex-toolbox.github.io/GrainReconstruction.html> Luiz F. G. Morales ETH Zürich Structural Geology and Tectonics Group Scientific Center for Optical and Electron Microscopy (ScopeM) HPM C 57.3 Otto-Stern-Weg 3 8093 Zurich, Switzerland Phone +41 44 633 37 46 Email: ***@***.*** On 4 Jun 2024, at 12:59, Brian-Liu-rx ***@***.***> wrote: Hi, everyone, I need to do the "filling the missing data " to my ebsd file, but it always makes the surface are very strangle. How can we fill the missing data without including the background area? Thanks! image.png (view on web)<https://github.com/mtex-toolbox/mtex/assets/69452222/ea145beb-0d8a-4fa3-a4e7-4fd54cb05f58> — Reply to this email directly, view it on GitHub<#2150>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ALE5IN4LRX3M6BBNJVEJMM3ZFWMYRAVCNFSM6AAAAABIYIQCY2VHI2DSMVQWIX3LMV43ERDJONRXK43TNFXW4OZWG43TMMZXGQ>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***> [ { ***@***.***": "http://schema.org", ***@***.***": "EmailMessage", "potentialAction": { ***@***.***": "ViewAction", "target": "#2150", "url": "#2150", "name": "View Discussion" }, "description": "View this Discussion on GitHub", "publisher": { ***@***.***": "Organization", "name": "GitHub", "url": "https://github.com" } } ]

[Brian-Liu-rx]

Hi, Luiz,
It makes no difference here. Could you check the codes for me ?

[grain_magb,ebsd.grainId] = calcGrains(ebsd('indexed'),'alpha',3,'threshold',5*degree);
ebsd_filled = fill(ebsd('indexed'),grain_magb);    

(In addition, when I delete the (''indexed"), the filling does not work at all.

Brian Liu

[Brian-Liu-rx]

@lfgmorales @

[lfgmorales]

Hi Can you upload your data somewhere, the code looks fine to me, I can run a quick example cheers Luiz Luiz F. G. Morales ETH Zürich Structural Geology and Tectonics Group Scientific Center for Optical and Electron Microscopy (ScopeM) HPM C 57.3 Otto-Stern-Weg 3 8093 Zurich, Switzerland Phone +41 44 633 37 46 Email: ***@***.*** On 4 Jun 2024, at 14:13, Brian-Liu-rx ***@***.***> wrote: Hi, Luiz, It makes no difference here. Could you check the codes for me ? [grain_magb,ebsd.grainId] = calcGrains(ebsd('indexed'),'alpha',3,'threshold',5*degree); ebsd_filled = fill(ebsd('indexed'),grain_magb); (In addition, when I delete the (''indexed"), the filling does not work at all. Brian Liu — Reply to this email directly, view it on GitHub<#2150 (reply in thread)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ALE5IN735L5PT4H2V6A7J6TZFWVNFAVCNFSM6AAAAABIYIQCY2VHI2DSMVQWIX3LMV43SRDJONRXK43TNFXW4Q3PNVWWK3TUHM4TMNRTHAZTK>. You are receiving this because you commented.Message ID: ***@***.***> [ { ***@***.***": "http://schema.org", ***@***.***": "EmailMessage", "potentialAction": { ***@***.***": "ViewAction", "target": "#2150 (reply in thread)", "url": "#2150 (reply in thread)", "name": "View Discussion" }, "description": "View this Discussion on GitHub", "publisher": { ***@***.***": "Organization", "name": "GitHub", "url": "https://github.com" } } ]

[Brian-Liu-rx]

Hi, Luiz,
Here are the data file! Thanks!
https://github.com/Brian-Liu-rx/my_mtex
Brian Liu

[Brian-Liu-rx]

@lfgmorales Luiz, please check the data.