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Return numeric_val as well as cn_state #59

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pintoa1-mskcc opened this issue May 22, 2023 · 0 comments

pintoa1-mskcc commented May 22, 2023

Oncokb CNA annotator can now accept numeric values that match GISTIC

Given that, can we report the numeric values in our final outputs as well?
For reference:

For each gene-sample combination, a copy number level is specified:

"-2" is a deep loss, possibly a homozygous deletion
"-1" is a single-copy loss (heterozygous deletion)
"0" is diploid
"1" indicates a low-level gain
"2" is a high-level amplification.

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