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Error in ifelse(wgd, round(ploidy), 2) : object 'ploidy' not found #46
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I'm getting this error also, @YingYa by any chance if you fixed it. |
I used docker://stevekm/facets-suite:2.0.8 to run then, the issue was solved. |
Hi YingYa, I was having the same issue and tried using the docker image you mentioned above. However, I am getting an error about the R library not being found: Were you able to resolve this? |
Feel free to use this one |
Do you have any ideas? |
Hi,
I am running facets-suite.v2.0.8 with "run-facets-wrapper.R --counts-file normal-VS-tumor.FACETS.pileup.gz --sample-id normal-VS-tumor --directory facets-suite --everything --genome hg38 --purity-cval 2000 --cval 1000", but some sampels were failed.
n = 626733 > max_n{n in table} = 72000 -- using that as asymptotic value.
n = 422038 > max_n{n in table} = 72000 -- using that as asymptotic value.
n = 217270 > max_n{n in table} = 72000 -- using that as asymptotic value.
n = 658014 > max_n{n in table} = 72000 -- using that as asymptotic value.
n = 422180 > max_n{n in table} = 72000 -- using that as asymptotic value.
n = 217309 > max_n{n in table} = 72000 -- using that as asymptotic value.
Error in ifelse(wgd, round(ploidy), 2) : object 'ploidy' not found
Calls: %>% -> eval -> eval -> gene_level_changes -> ifelse
Execution halted
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