NAMESPACE

# Generated by roxygen2: do not edit by hand

export(arm_level_changes)
export(calculate_fraction_cna)
export(calculate_hrdloh)
export(calculate_loh)
export(calculate_lst)
export(calculate_ntai)
export(ccf_annotate_maf)
export(ccf_annotate_maf_legacy)
export(cf_plot)
export(check_fit)
export(closeup_plot)
export(cnlr_plot)
export(format_igv_seg)
export(gene_level_changes)
export(icn_plot)
export(plot_segmentation)
export(read_snp_matrix)
export(run_facets)
export(create_legacy_output)
export(load_facets_output)
export(valor_plot)
import(data.table)
import(ggplot2)
importFrom(data.table,":=")
importFrom(data.table,foverlaps)
importFrom(data.table,setDT)
importFrom(diptest,dip.test)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,case_when)
importFrom(dplyr,distinct)
importFrom(dplyr,ends_with)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,matches)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_at)
importFrom(dplyr,pull)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(dplyr,summarize)
importFrom(dplyr,ungroup)
importFrom(egg,ggarrange)
importFrom(grDevices,colorRampPalette)
importFrom(plyr,mapvalues)
importFrom(purrr,discard)
importFrom(purrr,map_chr)
importFrom(purrr,map_dfr)
importFrom(purrr,map_if)
importFrom(purrr,map_lgl)
importFrom(scales,pretty_breaks)
importFrom(stats,dbinom)
importFrom(tidyr,gather)
importFrom(tidyr,separate_rows)