From 45eb035088175ae16e1768972eda4109c6e90dc1 Mon Sep 17 00:00:00 2001 From: Robert Wilson Date: Sat, 4 Nov 2023 16:45:11 +0000 Subject: [PATCH] Modified the imaging-data-csv-check command in the Makefile to remove the dependency on the hadoop cluster. --- Makefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Makefile b/Makefile index f211ef54..21e07700 100644 --- a/Makefile +++ b/Makefile @@ -163,7 +163,7 @@ imaging-omero-upload: imaging-data-csv-check: - @scp $(etl-host):$(etl-dir)/$(dr-tag)/output/images_pipeline_input_csv/part-*.csv $(input-data-path)/imaging-data-archive/$(dr-tag)/impc_images_input_wo_omero_ids.csv + @cp $(etl-dir)/$(dr-tag)/output/images_pipeline_input_csv/part-*.csv $(input-data-path)/imaging-data-archive/$(dr-tag)/impc_images_input_wo_omero_ids.csv @if [ -f "$(input-data-path)/imaging-data-archive/$(dr-tag)/impc_images_input_wo_omero_ids.csv" ]; then echo "CSV file successfully retrieved"; else "ERROR: The Pre-statistical analysis task did not produce a CSV file!"; fi