From e8bd488b1cc0ed4f3150bb8806b9ea3d22fdc586 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Miha=20Pav=C5=A1i=C4=8D?= <61510615+mpavsic@users.noreply.github.com> Date: Mon, 10 Jun 2024 16:59:36 +0200 Subject: [PATCH] Update documentation --- genindex.html | 2 +- naslovnica.html | 2 +- search.html | 2 +- searchindex.js | 2 +- seminar/seminar_2023-2024/naloge/s01.html | 2 +- seminar/seminar_2023-2024/naloge/s04.html | 2 +- seminar/seminar_2023-2024/naloge/s05.html | 2 +- seminar/seminar_2023-2024/naloge/s07.html | 2 +- seminar/seminar_2023-2024/naloge/s08.html | 2 +- seminar/seminar_2023-2024/naloge/s12.html | 2 +- seminar/seminar_2023-2024/naloge/s15.html | 2 +- seminar/seminar_2023-2024/naloge/s16.html | 2 +- seminar/seminar_2023-2024/naloge/s18.html | 2 +- seminar/seminar_2023-2024/naloge/s22.html | 2 +- seminar/seminar_2023-2024/naloge/s24.html | 2 +- seminar/seminar_2023-2024/naloge/s26.html | 2 +- seminar/seminar_2023-2024/naloge/s38.html | 2 +- seminar/seminar_2023-2024/naloge/s41.html 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157, 158, 168], "le": [11, 14, 17, 18, 22, 23, 24, 28, 29, 30, 32, 34, 35, 36, 39, 40, 41, 42, 44, 45, 46, 48, 54, 56, 58, 60, 65, 67, 69, 73, 79, 81, 85, 87, 89, 91, 93, 95, 101, 105, 107, 109, 115, 121, 123, 125, 127, 129, 131, 135, 137, 139, 141, 144, 146, 148, 149, 151, 152, 155, 156, 157, 158, 159, 163, 165, 166, 168], "uporabni\u0161ki": [11, 166], "razlikujejo": [11, 27, 30, 34, 83, 93, 103, 135], "ameri\u0161ki": 11, "rcsb": [11, 23], "evropski": 11, "pdbe": 11, "japonski": 11, "pdbj": 11, "stre\u017eniki": 11, "redno": [11, 15], "izmenjujejo": 11, "podobno": [11, 14, 15, 41, 42, 46, 51, 54, 56, 58, 62, 64, 71, 73, 81, 83, 85, 91, 101, 103, 105, 107, 109, 115, 127, 131, 135, 137, 141, 146, 153, 154, 155, 157, 158, 159, 160, 161, 163, 165, 168, 169], "collaboratori": 11, "structur": [11, 23, 44, 45, 46, 47, 48, 87, 131, 153, 157, 158, 165], "celo": [12, 14, 15, 20, 49, 73, 135, 165], "ve\u010dina": [12, 26, 54, 58, 67, 71, 81, 83, 85, 99, 101, 107, 111, 141], "bioinformatskih": 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"aaaaagggaataagggcgacacggaaatgttgaatactcatactcttcctttttcaatat": 92, "tattgaagcatttatcagggttattgtctcatgagcggatacatatttgaatgtatttag": 92, "aaaaataaacaaataggggttccgcgcacatttccccgaaaagtgccacctgacgtctaa": 92, "gaaaccattattatcatgacattaacctataaaaataggcgtatcacgaggccctttcgt": 92, "ctcgcgcgtttc": 92, "jakob": [93, 149], "veler": [93, 149], "mojim": [93, 113, 123, 139], "rekombinantnih": 93, "plazmidom": [93, 97, 127, 144], "poravnalo": 93, "neporavnan": 93, "translirani": 93, "nudix": 93, "msnaptlpdvraagavvtrsggmvllvhrpryddwsfpkgkldrgehvtaagvrevaeetgldirlgpplraqryaagnrmktvnywmgrvigdddvssyvanaeidevawvpfddamnllsypydretlrestlvrkktrafvvlrhaeararrtwrkndrlrpllkpgtlqaqrtvpvlaaydvtrlasssstrcvqtltpyadvtgyrlrthdglseedasaasvekivsnlvglnqgvvlcthrpvlpevfralgmsevrldpgamvvahlrkgkvvaterhgc": 93, "valina": [93, 101, 163], "napovedani": [93, 131], "ekstincijski": 93, "koefici": [93, 168], "35410l": 93, "molcm": 93, "reducirani": [93, 168], "cisteini": 93, "gravi": 93, "hidrofilen": [93, 101], "vodnem": 93, "dokazana": [93, 115], "izvor": [93, 105, 137], "navodil": [93, 149, 155], "najmanj\u0161a": [93, 109], "spelunca": 93, "koristnih": 93, "naletel": 93, "okso": 93, "fofatazo": 93, "a0quz2": 93, "smegmati": 93, "vzorcem": 93, "aminokislinskh": 93, "fofataz": 93, "5gg5": 93, "poravnava_5gg5_v": 93, "obarv": 93, "obarvani": [93, 115, 127, 135], "neujemajo": 93, "oklapaju": 93, "rpry": 93, "anotiranem": [93, 133], "izka\u017e": [93, 148], "sintetizirati": 93, "izpostav": 93, "raznim": 93, "homodimera": 93, "gdp": 93, "visokih": 93, "koncetracijah": 93, "odgovoren": 93, "diadenozin": 93, "polifosfatov": 93, "ap6a": 93, "ap5a": 93, "ap4a": 93, "prisotnosti": [93, 135, 157, 158], "inhibirana": 93, "fluoridnimi": 93, "hidrolazn": 93, "ohranjenim": 93, "motivom": 93, "\u0161katl": [93, 165], "velikostjo": [93, 152, 157, 158], "\u010drka": 93, "vllvhrpkyddwsfpkgk": 93, "ohrenjen": 93, "aaavrevaeetgl": 93, "landmark": 93, "upo\u0161tev": 93, "0001": 93, "veze": 93, "homolognostjo": 93, 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114, 116, 118, 120, 122, 124, 126, 128, 130, 132, 134, 136, 138, 140, 142, 143, 145, 147], "ttatcactcatggttatggcagcactgcataattctcttactgtcatgccatccgtaaga": [100, 102, 104, 106, 108, 110, 112, 114, 116, 118, 120, 122, 124, 126, 128, 130, 132, 134, 136, 138, 140, 142, 143, 145, 147], "tgcttttctgtgactggtgagtactcaaccaagtcattctgagaatagtgtatgcggcga": [100, 102, 104, 106, 108, 110, 112, 114, 116, 118, 120, 122, 124, 126, 128, 130, 132, 134, 136, 138, 140, 142, 143, 145, 147], "ccgagttgctcttgcccggcgtcaatacgggataataccgcgccacatagcagaacttta": [100, 102, 104, 106, 108, 110, 112, 114, 116, 118, 120, 122, 124, 126, 128, 130, 132, 134, 136, 138, 140, 142, 143, 145, 147], "aaagtgctcatcattggaaaacgttcttcggggcgaaaactctcaaggatcttaccgctg": [100, 102, 104, 106, 108, 110, 112, 114, 116, 118, 120, 122, 124, 126, 128, 130, 132, 134, 136, 138, 140, 142, 143, 145, 147], "ttgagatccagttcgatgtaacccactcgtgcacccaactgatcttcagcatcttttact": [100, 102, 104, 106, 108, 110, 112, 114, 116, 118, 120, 122, 124, 126, 128, 130, 132, 134, 136, 138, 140, 142, 143, 145, 147], "ttcaccagcgtttctgggtgagcaaaaacaggaaggcaaaatgccgcaaaaaagggaata": [100, 102, 104, 106, 108, 110, 112, 114, 116, 118, 120, 122, 124, 126, 128, 130, 132, 134, 136, 138, 140, 142, 143, 145, 147], "agggcgacacggaaatgttgaatactcatactcttcctttttcaatattattgaagcatt": [100, 102, 104, 106, 108, 110, 112, 114, 116, 118, 120, 122, 124, 126, 128, 130, 132, 134, 136, 138, 140, 142, 143, 145, 147], "tatcagggttattgtctcatgagcggatacatatttgaatgtatttagaaaaataaacaa": [100, 102, 104, 106, 108, 110, 112, 114, 116, 118, 120, 122, 124, 126, 128, 130, 132, 134, 136, 138, 140, 142, 143, 145, 147], "ataggggttccgcgcacatttccccgaaaagtgccacctgacgtctaagaaaccattatt": [100, 102, 104, 106, 108, 110, 112, 114, 116, 118, 120, 122, 124, 126, 128, 130, 132, 134, 136, 138, 140, 142, 143, 145, 147], "atcatgacattaacctataaaaataggcgtatcacgaggccctttcgtctcgcgcgtttc": [100, 102, 104, 106, 108, 110, 112, 114, 116, 118, 120, 122, 124, 126, 128, 130, 132, 134, 136, 138, 140, 142, 143, 145, 147], 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153], "prilepil": [109, 146], "prikazali": 109, "swissprott": 109, "dejali": 109, "predvidel": [109, 117, 123], "aaacccacttgttagttgcagtaacgggattccaatagtataaagcccctccggttgggt": 110, "cccaacctttaagtgcagcatctacggcctgcctggcaacattattaggctgcaaataga": 110, "attgaccatcactgactgcagtaaatgctttggcctcgaataccacacctttcacggtat": 110, "tagcaaattgttttgagtaaacacggtttagtgcaacagctgctaccgctacttgccctt": 110, "caaaaggttcacctctggcctcaccataaactagccggaccaaatcattaatatcctgac": 110, "ttgaaaggaatgatccgcgagatggagtggtggtatttgccgatccctggctgacttttt": 110, "ttatgatagccgttgctgtcattttcccaactataccatcaacagcaagtccattatctt": 110, "tttgaaacttacttactgcggtataagtctgccagccaaacttactatcggcagggccgg": 110, "ctgaatatcccagatagtttaaatctctttgtaattgattaacatcataaccctgcattc": 110, "ctaccttaagtatcctatctcctaaattagcttcaactactaccgggatagccagattag": 110, "cgaacattaccatcaatgtaataagaactagtgtagctatcttacttttcatttaaatta": 110, "tcctttctatgtaaggctggttatattgtatccaaactaggtgggctgtggcaaaatagc": 110, 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"ggtatgtaggcggtgctacagagttcttgaagtggtggcctaactacggctacactagaa": 110, "gaacagtatttggtatctgcgctctgctgaagccagttaccttcggaaaaagagttggta": 110, "gctcttgatccggcaaacaaaccaccgctggtagcggtggtttttttgtttgcaagcagc": 110, "agattacgcgcagaaaaaaaggatctcaagaagatcctttgatcttttctacggggtctg": 110, "acgctcagtggaacgaaaactcacgttaagggattttggtcatgagattatcaaaaagga": 110, "tcttcacctagatccttttaaattaaaaatgaagttttaaatcaatctaaagtatatatg": 110, "agtaaacttggtctgacagttaccaatgcttaatcagtgaggcacctatctcagcgatct": 110, "gtctatttcgttcatccatagttgcctgactccccgtcgtgtagataactacgatacggg": 110, "agggcttaccatctggccccagtgctgcaatgataccgcgagacccacgctcaccggctc": 110, "cagatttatca": 110, "dular": [111, 149], "identicikacijo": 111, "zacnejo": 111, "ogljikovodikovem": 111, "samn04260313": 111, "404": [111, 115], "thioredoxin": 111, "kug03238": 111, "hypothet": [111, 115], "asz90_019337": 111, "mftnffytlkhygmpvslnewqsllealeaglagssligfyylgramlvkteahydrfdmafaaffkei": 111, "tpeglpekiwewlnkelpeveiteemrrnhqqldldelkrmleerlkqqteehhggnrwvgtggtspfgh": 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"tioredoxin": [111, 119], "reduktazo": [111, 119], "tioreduxin": 111, "anaerob": 111, "mitohondrij": 111, "p29509": 111, "trxb1_yeast": 111, "reductas": 111, "atcc": [111, 129], "204508": [111, 129], "s288c": [111, 129], "559292": 111, "trr1": 111, "mvhnkvtiigsgpaahtaaiylaraeikpilyegmmangiaaggqltttteienfpgfpd": 111, "gltgselmdrmreqstkfgteiitetvskvdlsskpfklwtefnedaepvttdaiilatg": 111, "asakrmhlpgeetywqkgisacavcdgavpifrnkplavigggdsaceeaqfltkygskv": 111, "fmlvrkdhlrastimqkraeknekieilyntvaleakgdgkllnalrikntkkneetdlp": 111, "vsglfyaightpatkivagqvdtdeagyiktvpgssltsvpgffaagdvqdskyrqait": 111, "agsgcmaaldaekyltsl": 111, "tioredoksin": [111, 119], "disulfidna": 111, "vez": [111, 146], "dithiol": 111, "nadp": 111, "nadph": 111, "fad": [111, 141], "prepri\u010dljiva": 111, "prenesem": 111, "ttttcaaggagatagaaaccccggaaggacttcctgaaaaaatatgggaatggctgaata": 112, "aagaactgccagaggtggagatcaccgaagagatgcgcagaaatcatcagcagctggatt": 112, "tggatgaattaaaacgtatgctggaagaaaggctcaaacagcagaccgaggagcaccacg": 112, 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"najbolj-in-najmanj-ohranjene-regije"]], "Podobni evkariontski proteini": [[54, "podobni-evkariontski-proteini"], [62, "podobni-evkariontski-proteini"], [64, "podobni-evkariontski-proteini"], [79, "podobni-evkariontski-proteini"], [85, "podobni-evkariontski-proteini"], [115, "podobni-evkariontski-proteini"], [139, "podobni-evkariontski-proteini"], [141, "podobni-evkariontski-proteini"], [141, "id1"], [58, "podobni-evkariontski-proteini"], [67, "podobni-evkariontski-proteini"], [95, "podobni-evkariontski-proteini"], [99, "podobni-evkariontski-proteini"], [99, "id2"], [127, "podobni-evkariontski-proteini"]], "Model strukture": [[54, "model-strukture"], [115, "model-strukture"], [131, "model-strukture"], [67, "model-strukture"], [95, "model-strukture"], [103, "model-strukture"]], "Podobni proteini": [[54, "podobni-proteini"]], "AlphaFold": [[54, "alphafold"]], "S03": [[56, "s03"]], "Identifikacija": [[56, "identifikacija"], [111, "identifikacija"], [75, "identifikacija"]], "Splo\u0161na karakterizacija": [[56, "splosna-karakterizacija"]], "Strukturna katakterizacija": [[56, "strukturna-katakterizacija"], [83, "strukturna-katakterizacija"]], "S06": [[62, "s06"], [64, "s06"]], "Iskanje tar\u010dnega proteina": [[62, "iskanje-tarcnega-proteina"], [64, "iskanje-tarcnega-proteina"]], "Iskanje bolje anotiranega proteina": [[62, "iskanje-bolje-anotiranega-proteina"], [64, "iskanje-bolje-anotiranega-proteina"]], "Lastnosti proteina": [[62, "lastnosti-proteina"], [64, "lastnosti-proteina"], [69, "lastnosti-proteina"], [117, "lastnosti-proteina"], [129, "lastnosti-proteina"], [67, "lastnosti-proteina"]], "Sorodni proteini & ohranjene domene": [[62, "sorodni-proteini-ohranjene-domene"], [64, "sorodni-proteini-ohranjene-domene"]], "Medproteinske interakcije": [[62, "medproteinske-interakcije"], [64, "medproteinske-interakcije"], [79, "medproteinske-interakcije"], [117, "medproteinske-interakcije"], [129, "medproteinske-interakcije"], [148, "medproteinske-interakcije"]], "Struktura domnevnega seralizina in superpozicija": [[62, "struktura-domnevnega-seralizina-in-superpozicija"], [64, "struktura-domnevnega-seralizina-in-superpozicija"]], "Struktura": [[69, "struktura"], [139, "struktura"], [141, "struktura"], [58, "struktura"], [99, "struktura"]], "S09": [[69, "s09"]], "Postopek identifikacije proteina": [[69, "postopek-identifikacije-proteina"]], "S10": [[71, "s10"]], "Protein patatin": [[71, "protein-patatin"]], "Prokariontski proteini": [[71, "prokariontski-proteini"]], "Primerjava z evkariontskimi proteini": [[71, "primerjava-z-evkariontskimi-proteini"]], "Iskanje zaporedja": [[73, "iskanje-zaporedja"], [123, "iskanje-zaporedja"]], "Zna\u010dilnosti proteina": [[73, "znacilnosti-proteina"], [123, "znacilnosti-proteina"]], "Primerjava s podobnimi proteini": [[73, "primerjava-s-podobnimi-proteini"], [123, "primerjava-s-podobnimi-proteini"]], "Evkariontski ekvivalent": [[73, "evkariontski-ekvivalent"]], "Velikost proteina": [[77, "velikost-proteina"], [79, "velikost-proteina"], [85, "velikost-proteina"], [115, "velikost-proteina"], [131, "velikost-proteina"], [141, "velikost-proteina"], [58, "velikost-proteina"], [67, "velikost-proteina"], [95, "velikost-proteina"], [99, "velikost-proteina"], [103, "velikost-proteina"], [127, "velikost-proteina"]], "S13": [[77, "s13"]], "Ime in izvorni organizem proteina": [[77, "ime-in-izvorni-organizem-proteina"], [79, "ime-in-izvorni-organizem-proteina"], [85, "ime-in-izvorni-organizem-proteina"], [115, "ime-in-izvorni-organizem-proteina"], [67, "ime-in-izvorni-organizem-proteina"], [103, "ime-in-izvorni-organizem-proteina"], [127, "ime-in-izvorni-organizem-proteina"]], "Lokalizacija, topologija": [[77, "lokalizacija-topologija"], [115, "lokalizacija-topologija"], [103, "lokalizacija-topologija"]], "Funkcija proteina in substrat": [[77, "funkcija-proteina-in-substrat"], [127, "funkcija-proteina-in-substrat"]], "Sorodni proteini (poravnava, filogenetsko drevo)": [[77, "sorodni-proteini-poravnava-filogenetsko-drevo"], [79, "sorodni-proteini-poravnava-filogenetsko-drevo"], [115, "sorodni-proteini-poravnava-filogenetsko-drevo"], [67, "sorodni-proteini-poravnava-filogenetsko-drevo"], [127, "sorodni-proteini-poravnava-filogenetsko-drevo"]], "Najbolj in najmanj ohranjene regije, tudi v lu\u010di funkcije proteina": [[77, "najbolj-in-najmanj-ohranjene-regije-tudi-v-luci-funkcije-proteina"]], "Podobni evkariontski proteini \u2013 organizem, protein, funkcija, \u2026": [[77, "podobni-evkariontski-proteini-organizem-protein-funkcija"]], "Potencialna funkcijska povezanost z drugimi proteini, morebitne medproteinske interakcije": [[77, "potencialna-funkcijska-povezanost-z-drugimi-proteini-morebitne-medproteinske-interakcije"], [67, "potencialna-funkcijska-povezanost-z-drugimi-proteini-morebitne-medproteinske-interakcije"], [127, "potencialna-funkcijska-povezanost-z-drugimi-proteini-morebitne-medproteinske-interakcije"]], "Struktura oz. model strukture (tudi superpozicija pro- in evkariontskih variant)": [[77, "struktura-oz-model-strukture-tudi-superpozicija-pro-in-evkariontskih-variant"]], "S14": [[79, "s14"]], "Najbolj ohranjene regije": [[79, "najbolj-ohranjene-regije"], [117, "najbolj-ohranjene-regije"]], "Model strukture in superpozicija": [[79, "model-strukture-in-superpozicija"]], "S17": [[85, "s17"]], "Struktura in lokalizacija": [[85, "struktura-in-lokalizacija"]], "Reference": [[85, "reference"]], "S19": [[89, "s19"]], "Kako do proteina?": [[89, "kako-do-proteina"]], "Splo\u0161no o proteinu": [[89, "splosno-o-proteinu"]], "Sorodnost s proteini": [[89, "sorodnost-s-proteini"]], "Ohranjenost": [[89, "ohranjenost"]], "Struktura in superpozicija": [[89, "struktura-in-superpozicija"]], "S20": [[91, "s20"]], "Dolo\u010ditev zaporedja inserta": [[91, "dolocitev-zaporedja-inserta"]], "Analiza zaporedja": [[91, "analiza-zaporedja"]], "Dolo\u010ditev domen in aktivnosti proteina": [[91, "dolocitev-domen-in-aktivnosti-proteina"]], "Iskanje homologov in oblikovanje filogenetskega drevesa": [[91, "iskanje-homologov-in-oblikovanje-filogenetskega-drevesa"]], "Analiza interakcij proteina in sestavljanje strukture": [[91, "analiza-interakcij-proteina-in-sestavljanje-strukture"]], "Identifikacija proteina": [[93, "identifikacija-proteina"], [52, "identifikacija-proteina"]], "s21": [[93, "s21"]], "S21": [[93, "id1"]], "Dolo\u010ditev strukture in njenih zna\u010dilnosti": [[93, "dolocitev-strukture-in-njenih-znacilnosti"]], "Funkcije proteina": [[93, "funkcije-proteina"]], "Ohranjenost regij": [[93, "ohranjenost-regij"]], "Filogenetsko drevo": [[93, "filogenetsko-drevo"], [97, "filogenetsko-drevo"], [131, "filogenetsko-drevo"]], "S23": [[97, "s23"]], "Iskanje aminokislinskega zaporedja": [[97, "iskanje-aminokislinskega-zaporedja"]], "Iskanje podobnega evkariontskega proteina": [[97, "iskanje-podobnega-evkariontskega-proteina"]], "Analiza z InterPro": [[97, "analiza-z-interpro"]], "Splo\u0161ne lastnosti proteina": [[97, "splosne-lastnosti-proteina"]], "Poravnava z evkariontskim peroksiredoksinom": [[97, "poravnava-z-evkariontskim-peroksiredoksinom"]], "S27": [[105, "s27"]], "LOKALIZACIJA": [[107, "lokalizacija"], [65, "lokalizacija"]], "SORODNI PROTEINI": [[107, "sorodni-proteini"], [65, "sorodni-proteini"]], "MODEL STRUKTURE": [[107, "model-strukture"], [65, "model-strukture"]], "S28": [[107, "s28"]], "IME, VELIKOST IN IZVORNI ORGANIZEM PROTEINA": [[107, "ime-velikost-in-izvorni-organizem-proteina"]], "Potek analize:": [[107, "potek-analize"], [107, "id1"], [107, "id2"], [107, "id3"], [107, "id4"], [107, "id5"], [107, "id6"]], "ZGRADBA PROTEINA, FUNKCIJE IN OHRANJENOST REGIJ": [[107, "zgradba-proteina-funkcije-in-ohranjenost-regij"]], "POST-TRANSLACIJSKE MODIFIKACIJE": [[107, "post-translacijske-modifikacije"]], "INTERAKCIJE": [[107, "interakcije"]], "S29": [[109, "s29"]], "Iskanje in zna\u010dilnosti": [[109, "iskanje-in-znacilnosti"]], "Iskanje vstavljenega fragmenta": [[109, "iskanje-vstavljenega-fragmenta"]], "Iskanje proteina z blastx": [[109, "iskanje-proteina-z-blastx"]], "Iskanje z blastx po non-redundant bazi": [[109, "iskanje-z-blastx-po-non-redundant-bazi"]], "Podobni proteini v UniProtu": [[109, "podobni-proteini-v-uniprotu"]], "Domenska zgradba proteina": [[109, "domenska-zgradba-proteina"]], "Primerjave": [[109, "primerjave"]], "Primerjava s podobnimi proteini in filogenetsko drevo": [[109, "primerjava-s-podobnimi-proteini-in-filogenetsko-drevo"]], "Primerjava z evkariontskimi organizmi": [[109, "primerjava-z-evkariontskimi-organizmi"]], "Struktura proteina": [[109, "struktura-proteina"], [125, "struktura-proteina"]], "S30": [[111, "s30"]], "Povezava do datoteke z vhodnim podatkom: S30": [[111, "povezava-do-datoteke-z-vhodnim-podatkom-s30"]], "S31": [[113, "s31"]], "Povezava do datoteke z vhodnim podatkom: S32": [[115, "povezava-do-datoteke-z-vhodnim-podatkom-s32"]], "Potencialna funkcijska povezanost z drugimi proteini": [[115, "potencialna-funkcijska-povezanost-z-drugimi-proteini"], [131, "potencialna-funkcijska-povezanost-z-drugimi-proteini"]], "Iskanje proteina": [[117, "iskanje-proteina"], [129, "iskanje-proteina"], [81, "iskanje-proteina"], [95, "iskanje-proteina"]], "S33": [[117, "s33"]], "Nukleotidno zaporedje vklju\u010dka": [[117, "nukleotidno-zaporedje-vkljucka"], [129, "nukleotidno-zaporedje-vkljucka"]], "FecD sodeluje z drugimi komponentami Fec transportnega sistema. FecA deluje kot receptor na zunanji membrani, ki ve\u017ee Fe(3+)-dicitrat iz zunajceli\u010dnega okolja. FecB je periplazemski protein, ki prena\u0161a vezani Fe(3+)-dicitrat od FecA do FecC-FecD kompleksa v notranji membrani. FecE, ATP-aza, zagotavlja energijo za transport s hidrolizo ATP.": [[117, "fecd-sodeluje-z-drugimi-komponentami-fec-transportnega-sistema-feca-deluje-kot-receptor-na-zunanji-membrani-ki-veze-fe-3-dicitrat-iz-zunajcelicnega-okolja-fecb-je-periplazemski-protein-ki-prenasa-vezani-fe-3-dicitrat-od-feca-do-fecc-fecd-kompleksa-v-notranji-membrani-fece-atp-aza-zagotavlja-energijo-za-transport-s-hidrolizo-atp"]], "Podobni evkarionti": [[117, "podobni-evkarionti"], [129, "podobni-evkarionti"]], "Struktura oz. model sturkture": [[117, "struktura-oz-model-sturkture"], [129, "struktura-oz-model-sturkture"]], "S34": [[119, "s34"]], "S35": [[121, "s35"]], "1. Identifikacija vklju\u010dka": [[121, "identifikacija-vkljucka"]], "2. Lastnosti proteina": [[121, "lastnosti-proteina"], [125, "lastnosti-proteina"]], "3. Funkcija proteina in funkcijska povezanost z drugimi proteini": [[121, "funkcija-proteina-in-funkcijska-povezanost-z-drugimi-proteini"]], "4. Sorodni proteini": [[121, "sorodni-proteini"], [125, "sorodni-proteini"]], "5. Identifikacija ohranjenih domen": [[121, "identifikacija-ohranjenih-domen"]], "6. Podobni evkariontski proteini": [[121, "podobni-evkariontski-proteini"]], "7. Struktura proteina": [[121, "struktura-proteina"]], "Viri in orodja": [[121, "viri-in-orodja"]], "Podobni evkariontski proteini:": [[123, "podobni-evkariontski-proteini"], [83, "podobni-evkariontski-proteini"]], "S36": [[123, "s36"]], "Lokalizacija, topologija:": [[123, "lokalizacija-topologija"]], "Ohranjene regije:": [[123, "ohranjene-regije"]], "S37": [[125, "s37"]], "1. Identifikacija zapisa na vklju\u010dku": [[125, "identifikacija-zapisa-na-vkljucku"]], "3. Funkcija proteina": [[125, "funkcija-proteina"]], "5. Filogenetsko drevo": [[125, "filogenetsko-drevo"]], "4. Domenska zgradba proteina in ohranjenost domen": [[125, "domenska-zgradba-proteina-in-ohranjenost-domen"]], "5. Medproteinske interakcije": [[125, "medproteinske-interakcije"], [144, "medproteinske-interakcije"]], "S39": [[129, "s39"]], "Ohranjene regije": [[129, "ohranjene-regije"], [131, "ohranjene-regije"], [67, "ohranjene-regije"]], "Ime proteina": [[131, "ime-proteina"], [58, "ime-proteina"]], "Funkcija": [[131, "funkcija"], [58, "funkcija"]], "Lokalizacija": [[131, "lokalizacija"], [67, "lokalizacija"], [95, "lokalizacija"], [99, "lokalizacija"]], "S40": [[131, "s40"]], "Identifikacija vklju\u010dka": [[131, "identifikacija-vkljucka"]], "Izvorni organizem proteina": [[131, "izvorni-organizem-proteina"]], "Ostali mo\u017eni izvorni organizmi": [[131, "ostali-mozni-izvorni-organizmi"]], "Ostale mo\u017ene lokalizacije": [[131, "ostale-mozne-lokalizacije"]], "Poravnava": [[131, "poravnava"], [162, "poravnava"]], "Sorodni evkariontski proteini": [[131, "sorodni-evkariontski-proteini"], [131, "id1"]], "Organizem": [[131, "organizem"]], "Imena proteinov": [[131, "imena-proteinov"]], "S42": [[135, "s42"]], "Zporedje vklju\u010dka:": [[135, "zporedje-vkljucka"]], "Lastnosti in velikost proteina:": [[135, "lastnosti-in-velikost-proteina"]], "Sorodni proteini:": [[135, "sorodni-proteini"]], "Lokalizacja, topologija:": [[135, "lokalizacja-topologija"]], "Domenska zgradba:": [[135, "domenska-zgradba"], [137, "domenska-zgradba"]], "Postranslacijske mosifikacije": [[135, "postranslacijske-mosifikacije"]], "Funkcija proteina:": [[135, "funkcija-proteina"], [137, "funkcija-proteina"]], "Aktivno mesto:": [[135, "aktivno-mesto"]], "Poravnava ve\u010d zaporedij:": [[135, "poravnava-vec-zaporedij"]], "Filogenetsko drevo:": [[135, "filogenetsko-drevo"]], "Evkariontski protein:": [[135, "evkariontski-protein"]], "Povezave z ostalimi proteini:": [[135, "povezave-z-ostalimi-proteini"]], "Alphafold:": [[135, "alphafold"]], "Chimera:": [[135, "chimera"]], "Najbolj in najmanj ohranjene regije:": [[137, "najbolj-in-najmanj-ohranjene-regije"], [99, "id1"]], "S43": [[137, "s43"]], "Ime in izvorni organizem proteina:": [[137, "ime-in-izvorni-organizem-proteina"]], "Lokalizacija,topologija:": [[137, "lokalizacija-topologija"]], "Velikost proteina:": [[137, "velikost-proteina"]], "Posttranslacijske modifikacije:": [[137, "posttranslacijske-modifikacije"]], "Sorodni proteini,poravnava,filogenetsko drevo:": [[137, "sorodni-proteini-poravnava-filogenetsko-drevo"]], "Aminokislinsko zaporedje proteina": [[137, "aminokislinsko-zaporedje-proteina"]], "Slika iz Alphafold-a": [[137, "slika-iz-alphafold-a"]], "Slika iz Chimere:": [[137, "slika-iz-chimere"]], "S44": [[139, "s44"]], "Moj protein": [[139, "moj-protein"]], "Podoben protein": [[139, "podoben-protein"]], "Funkcijska podobnost": [[139, "funkcijska-podobnost"]], "Substrat": [[141, "substrat"], [58, "substrat"]], "Lokalizacija in topologija": [[141, "lokalizacija-in-topologija"], [127, "lokalizacija-in-topologija"]], "S45": [[141, "s45"]], "Ime in izvorni organizem": [[141, "ime-in-izvorni-organizem"]], "Potencialna funkcijska povezanost z drugimi proteini, medproteinske interakcije": [[141, "potencialna-funkcijska-povezanost-z-drugimi-proteini-medproteinske-interakcije"]], "S48": [[146, "s48"]], "Povezava do datoteke z vhodnim podatkom: S48": [[146, "povezava-do-datoteke-z-vhodnim-podatkom-s48"]], "1. Identifikacija pozicije MKR (Multiple konirne regije)": [[146, "identifikacija-pozicije-mkr-multiple-konirne-regije"]], "2. Iskanje z proteina": [[146, "iskanje-z-proteina"]], "Blastx": [[146, "blastx"]], "Blastp": [[146, "blastp"]], "3. Priprava modela AlphaFold3": [[146, "priprava-modela-alphafold3"]], "4. Analiza proteina": [[146, "analiza-proteina"]], "Posttranslacijske modifikacije": [[148, "posttranslacijske-modifikacije"], [103, "posttranslacijske-modifikacije"]], "Za\u010detek dela in osnove ugotovitve": [[148, "zacetek-dela-in-osnove-ugotovitve"]], "Aminokislinsko zaporedje dobljenega proteina": [[148, "aminokislinsko-zaporedje-dobljenega-proteina"]], "Domene": [[148, "domene"]], "Ohranjenost in mutacije": [[148, "ohranjenost-in-mutacije"]], "Predvidevanje strukture: Alphafold": [[148, "predvidevanje-strukture-alphafold"]], "Skupine in termini": [[149, "skupine-in-termini"]], "Splo\u0161ne informacije": [[149, "splosne-informacije"]], "Problem in naloga": [[149, "problem-in-naloga"]], "Navodila za izdelavo seminarske naloge": [[149, "navodila-za-izdelavo-seminarske-naloge"]], "Oddane naloge": [[149, "oddane-naloge"]], "VAJA: Iskanje podobnih zaporedij z BLAST": [[151, "vaja-iskanje-podobnih-zaporedij-z-blast"]], "Naloga 1: enostavno iskanje": [[151, "naloga-1-enostavno-iskanje"]], "Naloga 2: homologi": [[151, "naloga-2-homologi"]], "Naloga 3: iskanje s kratkim zaporedjem": [[151, "naloga-3-iskanje-s-kratkim-zaporedjem"]], "Naloga 4: ortologi": [[151, "naloga-4-ortologi"]], "Naloga 5: virusni genom": [[151, "naloga-5-virusni-genom"]], "Naloga 6: PSI-BLAST": [[151, "naloga-6-psi-blast"]], "VAJA: To\u010dkovni diagram": [[152, "vaja-tockovni-diagram"]], "Naloga 1: primerjava dveh kraj\u0161ih zaporedij": [[152, "naloga-1-primerjava-dveh-krajsih-zaporedij"]], "Naloga 2: Primerjava genomskih zaporedij": [[152, "naloga-2-primerjava-genomskih-zaporedij"]], "VAJA: Programski dostop do GenBank (Python)": [[153, "vaja-programski-dostop-do-genbank-python"], [167, "vaja-programski-dostop-do-genbank-python"]], "Zgledi": [[153, "zgledi"], [163, "zgledi"], [165, "zgledi"], [168, "zgledi"]], "Dostop do GenBank": [[153, "dostop-do-genbank"]], "Shranjevanje zapisa v datoteko": [[153, "shranjevanje-zapisa-v-datoteko"]], "Ekstrakcija dela zapisa in prevajanje": [[153, "ekstrakcija-dela-zapisa-in-prevajanje"]], "Naloga": [[153, "naloga"], [153, "id1"], [154, "naloga"], [155, "naloga"], [156, "naloga"], [157, "naloga"], [159, "naloga"], [159, "id2"], [160, "naloga"], [161, "naloga"], [163, "naloga"], [168, "naloga"]], "Ozadje": [[153, "ozadje"], [159, "ozadje"], [159, "id1"], [168, "ozadje"], [169, "ozadje"]], "Namigi": [[153, "namigi"]], "V razmislek": [[153, "v-razmislek"]], "VAJA: Dostop do GenBank v brskalniku": [[154, "vaja-dostop-do-genbank-v-brskalniku"]], "VAJA: Grafi in program Cytoscape": [[155, "vaja-grafi-in-program-cytoscape"]], "Postopek": [[155, "postopek"]], "VAJA: Izra\u010dun matrike zamenjav (Python)": [[156, "vaja-izracun-matrike-zamenjav-python"]], "Primer kode": [[156, "primer-kode"]], "VAJA: Modeliranje na osnovi homologije": [[157, "vaja-modeliranje-na-osnovi-homologije"], [158, "vaja-modeliranje-na-osnovi-homologije"]], "SWISS-MODEL": [[157, "swiss-model"], [158, "swiss-model"]], "AlphaFold2": [[157, "alphafold2"], [158, 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Identifikacija proteina": [[144, "identifikacija-proteina"]], "2. Osnovni podatki proteina": [[144, "osnovni-podatki-proteina"]], "3. Sorodni proteini": [[144, "sorodni-proteini"]], "6. 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"nucleozid": 93, "difosfatnih": 93, "prokarionski": 93, "protu": 93, "abk74793": 93, "rnazami": 93, "polimerazami": 93, "fenilalanil": 93, "sintetazami": 93, "polifosfat": 93, "kinazami": [93, 107], "evkarionski": 93, "prokarionskem": 93, "hidrolazami": [93, 103], "tgcagccggtctcctgaacccgatgctggccggcggcgcgatggcgctgtcctcggtgct": 94, "ggtggtcaccaacagcctccgcctgcgacgcttcgcctgaggtgcgcgtcgccccttgcg": 94, "cgagtgtggggagatgtgagactaacgaccatgtcgaacgcgcccacgctgcccgacgtt": 94, "cgtgcggcgggcgccgtggtcacccggtccgggggcatggtgctgctggtccatcggccc": 94, "cgctacgacgactggtcgtttcccaagggcaagctcgaccgtggcgagcacgtcactgcc": 94, "gccggcgtccgggaggtggccgaggagacgggactcgacatccgcctgggtccgccgttg": 94, "cgggctcagcgctacgccgccggcaaccggatgaagaccgtgaactactggatgggccgg": 94, "gtgatcggcgacgacgacgtgagctcctacgtcgccaacgcggagatcgacgaggtcgcc": 94, "tgggtccccttcgacgacgccatgaacctgctcagctatccctacgaccgggagacgctg": 94, "cgcgagtccacgctggtgcgcaagaagacgcgtgcgttcgtggtgctgcggcacgccgag": 94, 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"predvidel": [109, 117, 123], "aaacccacttgttagttgcagtaacgggattccaatagtataaagcccctccggttgggt": 110, "cccaacctttaagtgcagcatctacggcctgcctggcaacattattaggctgcaaataga": 110, "attgaccatcactgactgcagtaaatgctttggcctcgaataccacacctttcacggtat": 110, "tagcaaattgttttgagtaaacacggtttagtgcaacagctgctaccgctacttgccctt": 110, "caaaaggttcacctctggcctcaccataaactagccggaccaaatcattaatatcctgac": 110, "ttgaaaggaatgatccgcgagatggagtggtggtatttgccgatccctggctgacttttt": 110, "ttatgatagccgttgctgtcattttcccaactataccatcaacagcaagtccattatctt": 110, "tttgaaacttacttactgcggtataagtctgccagccaaacttactatcggcagggccgg": 110, "ctgaatatcccagatagtttaaatctctttgtaattgattaacatcataaccctgcattc": 110, "ctaccttaagtatcctatctcctaaattagcttcaactactaccgggatagccagattag": 110, "cgaacattaccatcaatgtaataagaactagtgtagctatcttacttttcatttaaatta": 110, "tcctttctatgtaaggctggttatattgtatccaaactaggtgggctgtggcaaaatagc": 110, "tatcggatcccgggcccgtcgactgcagaggcctgcatgcaagcttggcgtaatcatggt": 110, "catagctgtttcctgtgtgaaattgttatccgctcacaattccacacaacatacgagccg": 110, 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"gctcttgatccggcaaacaaaccaccgctggtagcggtggtttttttgtttgcaagcagc": 110, "agattacgcgcagaaaaaaaggatctcaagaagatcctttgatcttttctacggggtctg": 110, "acgctcagtggaacgaaaactcacgttaagggattttggtcatgagattatcaaaaagga": 110, "tcttcacctagatccttttaaattaaaaatgaagttttaaatcaatctaaagtatatatg": 110, "agtaaacttggtctgacagttaccaatgcttaatcagtgaggcacctatctcagcgatct": 110, "gtctatttcgttcatccatagttgcctgactccccgtcgtgtagataactacgatacggg": 110, "agggcttaccatctggccccagtgctgcaatgataccgcgagacccacgctcaccggctc": 110, "cagatttatca": 110, "dular": [111, 149], "identicikacijo": 111, "zacnejo": 111, "ogljikovodikovem": 111, "samn04260313": 111, "404": [111, 115], "thioredoxin": 111, "kug03238": 111, "hypothet": [111, 115], "asz90_019337": 111, "mftnffytlkhygmpvslnewqsllealeaglagssligfyylgramlvkteahydrfdmafaaffkei": 111, "tpeglpekiwewlnkelpeveiteemrrnhqqldldelkrmleerlkqqteehhggnrwvgtggtspfgh": 111, "sgyhpggiriggesrnlsavkvagmrrfqefrtdetlgvrqfqvalrklrqfttrldgarteldldatid": 111, 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"netsolp-topnost-proteinov"]], "NetNGlyc - N-glikozilacija \u010dlove\u0161kih proteinov": [[24, "netnglyc-n-glikozilacija-cloveskih-proteinov"]], "Vhodni podatki in rezultati": [[24, "vhodni-podatki-in-rezultati"]], "Primer 1 - inzulinski receptor (INSR_HUMAN)": [[24, "primer-1-inzulinski-receptor-insr-human"]], "Potek dela": [[24, "potek-dela"], [24, "id1"]], "Analiza rezultatov in razlaga": [[24, "analiza-rezultatov-in-razlaga"], [24, "id2"]], "Primer 2 - transferinski receptor 1 (TFR1_HUMAN)": [[24, "primer-2-transferinski-receptor-1-tfr1-human"]], "Napoved lokalizacije proteinov - DeepLoc": [[25, "napoved-lokalizacije-proteinov-deeploc"]], "Pri\u010dakovani rezultati in razlaga:": [[25, "pricakovani-rezultati-in-razlaga"]], "Klasifikacija proteinov z InterPro": [[26, "klasifikacija-proteinov-z-interpro"]], "HMMER": [[27, "hmmer"]], "Poravnava zaporedij z MUSCLE": [[28, "poravnava-zaporedij-z-muscle"]], "M-coffee, poravnava zaporedij": [[29, "m-coffee-poravnava-zaporedij"]], "COBALT": [[30, "cobalt"]], "webPRANK": [[31, "webprank"]], "Primer-BLAST": [[32, "primer-blast"]], "Pregledovalnik genoma GDV": [[33, "pregledovalnik-genoma-gdv"]], "Ensembl genome browser 106": [[34, "ensembl-genome-browser-106"]], "EasyGene - napovedovanje prokariontskih genov": [[35, "easygene-napovedovanje-prokariontskih-genov"]], "AUGUSTUS - identifikacija genov": [[36, "augustus-identifikacija-genov"]], "NetGene 2 - napovedovanje mest izrezovanja": [[37, "netgene-2-napovedovanje-mest-izrezovanja"]], "Primer 1 - IL1B": [[37, "primer-1-il1b"]], "Primer 2 - p53": [[37, "primer-2-p53"]], "Expression Atlas \u2013 izra\u017eanje genov": [[38, "expression-atlas-izrazanje-genov"]], "TreeFam - podatkovna zbirka dreves \u017eivalskih genov": [[39, "treefam-podatkovna-zbirka-dreves-zivalskih-genov"]], "PhyML-filogenetska drevesa": [[40, "phyml-filogenetska-drevesa"]], "Citokrom_c": [[40, "citokrom-c"]], "Outgroup": [[40, "outgroup"]], "OneTwoTree": [[41, "onetwotree"]], "CATH: Protein 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[150, "vhodni-podatek"]], "Rezultati analiz": [[52, "rezultati-analiz"], [54, "rezultati-analiz"], [56, "rezultati-analiz"], [58, "rezultati-analiz"], [60, "rezultati-analiz"], [62, "rezultati-analiz"], [64, "rezultati-analiz"], [65, "rezultati-analiz"], [67, "rezultati-analiz"], [69, "rezultati-analiz"], [71, "rezultati-analiz"], [73, "rezultati-analiz"], [75, "rezultati-analiz"], [77, "rezultati-analiz"], [79, "rezultati-analiz"], [81, "rezultati-analiz"], [83, "rezultati-analiz"], [85, "rezultati-analiz"], [87, "rezultati-analiz"], [89, "rezultati-analiz"], [91, "rezultati-analiz"], [93, "rezultati-analiz"], [95, "rezultati-analiz"], [97, "rezultati-analiz"], [99, "rezultati-analiz"], [103, "rezultati-analiz"], [105, "rezultati-analiz"], [107, "rezultati-analiz"], [109, "rezultati-analiz"], [111, "rezultati-analiz"], [113, "rezultati-analiz"], [115, "rezultati-analiz"], [117, "rezultati-analiz"], [119, "rezultati-analiz"], [121, "rezultati-analiz"], [123, "rezultati-analiz"], [125, 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[95, "domenska-zgradba"], [99, "domenska-zgradba"], [103, "domenska-zgradba"], [115, "domenska-zgradba"], [127, "domenska-zgradba"], [131, "domenska-zgradba"], [141, "domenska-zgradba"]], "Post-translacijske modifikacije": [[54, "post-translacijske-modifikacije"], [67, "post-translacijske-modifikacije"], [77, "post-translacijske-modifikacije"], [85, "post-translacijske-modifikacije"], [95, "post-translacijske-modifikacije"], [99, "post-translacijske-modifikacije"], [115, "post-translacijske-modifikacije"], [123, "post-translacijske-modifikacije"], [127, "post-translacijske-modifikacije"], [131, "post-translacijske-modifikacije"], [141, "post-translacijske-modifikacije"]], "Funkcija proteina": [[54, "funkcija-proteina"], [58, "funkcija-proteina"], [67, "funkcija-proteina"], [79, "funkcija-proteina"], [85, "funkcija-proteina"], [99, "funkcija-proteina"], [103, "funkcija-proteina"], [115, "funkcija-proteina"], [117, "funkcija-proteina"], [129, "funkcija-proteina"], [131, "funkcija-proteina"], [141, "funkcija-proteina"], [148, "funkcija-proteina"]], "Interakcije z drugimi proteini": [[54, "interakcije-z-drugimi-proteini"]], "Sorodni proteini": [[54, "sorodni-proteini"], [58, "sorodni-proteini"], [58, "id1"], [85, "sorodni-proteini"], [95, "sorodni-proteini"], [99, "sorodni-proteini"], [103, "sorodni-proteini"], [117, "sorodni-proteini"], [123, "sorodni-proteini"], [129, "sorodni-proteini"], [131, "sorodni-proteini"], [139, "sorodni-proteini"], [141, "sorodni-proteini"], [148, "sorodni-proteini"]], "Najbolj in najmanj ohranjene regije": [[54, "najbolj-in-najmanj-ohranjene-regije"], [58, "najbolj-in-najmanj-ohranjene-regije"], [95, "najbolj-in-najmanj-ohranjene-regije"], [99, "najbolj-in-najmanj-ohranjene-regije"], [103, "najbolj-in-najmanj-ohranjene-regije"], [115, "najbolj-in-najmanj-ohranjene-regije"], [127, "najbolj-in-najmanj-ohranjene-regije"], [141, "najbolj-in-najmanj-ohranjene-regije"]], "Podobni evkariontski proteini": [[54, "podobni-evkariontski-proteini"], [58, "podobni-evkariontski-proteini"], [62, "podobni-evkariontski-proteini"], [64, "podobni-evkariontski-proteini"], [67, "podobni-evkariontski-proteini"], [79, "podobni-evkariontski-proteini"], [85, "podobni-evkariontski-proteini"], [95, "podobni-evkariontski-proteini"], [99, "podobni-evkariontski-proteini"], [99, "id2"], [115, "podobni-evkariontski-proteini"], [127, "podobni-evkariontski-proteini"], [139, "podobni-evkariontski-proteini"], [141, "podobni-evkariontski-proteini"], [141, "id1"]], "Model strukture": [[54, "model-strukture"], [67, "model-strukture"], [95, "model-strukture"], [103, "model-strukture"], [115, "model-strukture"], [131, "model-strukture"]], "Podobni proteini": [[54, "podobni-proteini"]], "AlphaFold": [[54, "alphafold"]], "S03": [[56, "s03"]], "Identifikacija": [[56, "identifikacija"], [75, "identifikacija"], [111, "identifikacija"]], "Splo\u0161na karakterizacija": [[56, "splosna-karakterizacija"]], "Strukturna katakterizacija": [[56, "strukturna-katakterizacija"], [83, "strukturna-katakterizacija"]], "S04": [[58, "s04"]], "Osnovni podatki": [[58, "osnovni-podatki"]], "Ime proteina": [[58, "ime-proteina"], [131, "ime-proteina"]], "izvorni organizem proteina": [[58, "izvorni-organizem-proteina"]], "Lokalizacija in topologija (\u010de je membranski)": [[58, "lokalizacija-in-topologija-ce-je-membranski"]], "Velikost proteina": [[58, "velikost-proteina"], [67, "velikost-proteina"], [77, "velikost-proteina"], [79, "velikost-proteina"], [85, "velikost-proteina"], [95, "velikost-proteina"], [99, "velikost-proteina"], [103, "velikost-proteina"], [115, "velikost-proteina"], [127, "velikost-proteina"], [131, "velikost-proteina"], [141, "velikost-proteina"]], "Post-translacijske modifikacije (PTM)": [[58, "post-translacijske-modifikacije-ptm"]], "Funkcija": [[58, "funkcija"], [131, "funkcija"]], "Substrat": [[58, "substrat"], [141, "substrat"]], "Filogenetsko drevo in poravnava": [[58, "filogenetsko-drevo-in-poravnava"]], "Funkcijska povezanost z drugimi proteini": [[58, "funkcijska-povezanost-z-drugimi-proteini"], [95, "funkcijska-povezanost-z-drugimi-proteini"], [99, "funkcijska-povezanost-z-drugimi-proteini"], [99, "id3"]], "Morebitne medproteinske interakcije": [[58, "morebitne-medproteinske-interakcije"]], "Struktura": [[58, "struktura"], [69, "struktura"], [99, "struktura"], [139, "struktura"], [141, "struktura"]], "eksperimentalno dolo\u010dena struktura": [[58, "eksperimentalno-dolocena-struktura"]], "Model": [[58, "model"]], "Superpozicija pro- in evakriontskih variant": [[58, "superpozicija-pro-in-evakriontskih-variant"]], "S05": [[60, "s05"]], "Identificiranje vstavljenega vklju\u010dka": [[60, "identificiranje-vstavljenega-vkljucka"]], "Analiza proteina": [[60, "analiza-proteina"]], "S06": [[62, "s06"], [64, "s06"]], "Iskanje tar\u010dnega proteina": [[62, "iskanje-tarcnega-proteina"], [64, "iskanje-tarcnega-proteina"]], "Iskanje bolje anotiranega proteina": [[62, "iskanje-bolje-anotiranega-proteina"], [64, "iskanje-bolje-anotiranega-proteina"]], "Lastnosti proteina": [[62, "lastnosti-proteina"], [64, "lastnosti-proteina"], [67, "lastnosti-proteina"], [69, "lastnosti-proteina"], [117, "lastnosti-proteina"], [129, "lastnosti-proteina"]], "Sorodni proteini & ohranjene domene": [[62, "sorodni-proteini-ohranjene-domene"], [64, "sorodni-proteini-ohranjene-domene"]], "Medproteinske interakcije": [[62, "medproteinske-interakcije"], [64, "medproteinske-interakcije"], [79, "medproteinske-interakcije"], [117, "medproteinske-interakcije"], [129, "medproteinske-interakcije"], [148, "medproteinske-interakcije"]], "Struktura domnevnega seralizina in superpozicija": [[62, "struktura-domnevnega-seralizina-in-superpozicija"], [64, "struktura-domnevnega-seralizina-in-superpozicija"]], "S07": [[65, "s07"]], "IME": [[65, "ime"]], "IZVORNI ORGANIZEM": [[65, "izvorni-organizem"]], "DOMENA": [[65, "domena"]], "FUNKCIJA": [[65, "funkcija"]], "LOKALIZACIJA": [[65, "lokalizacija"], [107, "lokalizacija"]], "SORODNI PROTEINI": [[65, "sorodni-proteini"], [107, "sorodni-proteini"]], "POSTTRANSLACIJSKE MODIFIKACIJE": [[65, "posttranslacijske-modifikacije"]], "NAJBOLJ IN NAJMANJ OHRANJENE REGIJE": [[65, "najbolj-in-najmanj-ohranjene-regije"]], "PODOBNI EVKARIONTSKI PROTEINI": [[65, "podobni-evkariontski-proteini"]], "MEDPROTEINSKE INTERAKCIJE": [[65, "medproteinske-interakcije"]], "MODEL STRUKTURE": [[65, "model-strukture"], [107, "model-strukture"]], "S08": [[67, "s08"]], "Ime in izvorni organizem proteina": [[67, "ime-in-izvorni-organizem-proteina"], [77, "ime-in-izvorni-organizem-proteina"], [79, "ime-in-izvorni-organizem-proteina"], [85, "ime-in-izvorni-organizem-proteina"], [103, "ime-in-izvorni-organizem-proteina"], [115, "ime-in-izvorni-organizem-proteina"], [127, "ime-in-izvorni-organizem-proteina"]], "Lokalizacija": [[67, "lokalizacija"], [95, "lokalizacija"], [99, "lokalizacija"], [131, "lokalizacija"]], "Sorodni proteini (poravnava, filogenetsko drevo)": [[67, "sorodni-proteini-poravnava-filogenetsko-drevo"], [77, "sorodni-proteini-poravnava-filogenetsko-drevo"], [79, "sorodni-proteini-poravnava-filogenetsko-drevo"], [115, "sorodni-proteini-poravnava-filogenetsko-drevo"], [127, "sorodni-proteini-poravnava-filogenetsko-drevo"]], "Ohranjene regije": [[67, "ohranjene-regije"], [129, "ohranjene-regije"], [131, "ohranjene-regije"]], "Potencialna funkcijska povezanost z drugimi proteini, morebitne medproteinske interakcije": [[67, "potencialna-funkcijska-povezanost-z-drugimi-proteini-morebitne-medproteinske-interakcije"], [77, "potencialna-funkcijska-povezanost-z-drugimi-proteini-morebitne-medproteinske-interakcije"], [127, "potencialna-funkcijska-povezanost-z-drugimi-proteini-morebitne-medproteinske-interakcije"]], "S09": [[69, "s09"]], "Postopek identifikacije proteina": [[69, "postopek-identifikacije-proteina"]], "S10": [[71, "s10"]], "Protein patatin": [[71, "protein-patatin"]], "Prokariontski proteini": [[71, "prokariontski-proteini"]], "Primerjava z evkariontskimi proteini": [[71, "primerjava-z-evkariontskimi-proteini"]], "Iskanje zaporedja": [[73, "iskanje-zaporedja"], [123, "iskanje-zaporedja"]], "Zna\u010dilnosti proteina": [[73, "znacilnosti-proteina"], [123, "znacilnosti-proteina"]], "Primerjava s podobnimi proteini": [[73, "primerjava-s-podobnimi-proteini"], [123, "primerjava-s-podobnimi-proteini"]], "Evkariontski ekvivalent": [[73, "evkariontski-ekvivalent"]], "S12": [[75, "s12"]], "Ime, velikost in izvorni organizem": [[75, "ime-velikost-in-izvorni-organizem"]], "Podobnost z evkariontskimi proteini": [[75, "podobnost-z-evkariontskimi-proteini"]], "Poravnava in ohranjenost regij": [[75, "poravnava-in-ohranjenost-regij"]], "Post translacijske modifikacije, domene, lokacija in interakcija z drugimi proteini": [[75, "post-translacijske-modifikacije-domene-lokacija-in-interakcija-z-drugimi-proteini"]], "Funkcija in vezava substrata": [[75, "funkcija-in-vezava-substrata"]], "Model proteina": [[75, "model-proteina"]], "S13": [[77, "s13"]], "Lokalizacija, topologija": [[77, "lokalizacija-topologija"], [103, "lokalizacija-topologija"], [115, "lokalizacija-topologija"]], "Funkcija proteina in substrat": [[77, "funkcija-proteina-in-substrat"], [127, "funkcija-proteina-in-substrat"]], "Najbolj in najmanj ohranjene regije, tudi v lu\u010di funkcije proteina": [[77, "najbolj-in-najmanj-ohranjene-regije-tudi-v-luci-funkcije-proteina"]], "Podobni evkariontski proteini \u2013 organizem, protein, funkcija, \u2026": [[77, "podobni-evkariontski-proteini-organizem-protein-funkcija"]], "Struktura oz. model strukture (tudi superpozicija pro- in evkariontskih variant)": [[77, "struktura-oz-model-strukture-tudi-superpozicija-pro-in-evkariontskih-variant"]], "S14": [[79, "s14"]], "Najbolj ohranjene regije": [[79, "najbolj-ohranjene-regije"], [117, "najbolj-ohranjene-regije"]], "Model strukture in superpozicija": [[79, "model-strukture-in-superpozicija"]], "S15": [[81, "s15"]], "Iskanje proteina": [[81, "iskanje-proteina"], [95, "iskanje-proteina"], [117, "iskanje-proteina"], [129, "iskanje-proteina"]], "S16": [[83, "s16"]], "Splo\u0161na karakterizacija:": [[83, "splosna-karakterizacija"]], "Lokacija in post-translacijske modifikacije": [[83, "lokacija-in-post-translacijske-modifikacije"]], "Sorodni proteini in ohranjenost regij:": [[83, "sorodni-proteini-in-ohranjenost-regij"]], "Podobni evkariontski proteini:": [[83, "podobni-evkariontski-proteini"], [123, "podobni-evkariontski-proteini"]], "Medproteinske interakcije:": [[83, "medproteinske-interakcije"]], "VIRI:": [[83, "viri"]], "S17": [[85, "s17"]], "Struktura in lokalizacija": [[85, "struktura-in-lokalizacija"]], "Reference": [[85, "reference"]], "S18": [[87, "s18"]], "IME in IZVORNI ORGANIZEM PROTEINA": [[87, "ime-in-izvorni-organizem-proteina"]], "Lastnosti proteina:": [[87, "lastnosti-proteina"]], "Zaklju\u010dek": [[87, "zakljucek"]], "S19": [[89, "s19"]], "Kako do proteina?": [[89, "kako-do-proteina"]], "Splo\u0161no o proteinu": [[89, "splosno-o-proteinu"]], "Sorodnost s proteini": [[89, "sorodnost-s-proteini"]], "Ohranjenost": [[89, "ohranjenost"]], "Struktura in superpozicija": [[89, "struktura-in-superpozicija"]], "S20": [[91, "s20"]], "Dolo\u010ditev zaporedja inserta": [[91, "dolocitev-zaporedja-inserta"]], "Analiza zaporedja": [[91, "analiza-zaporedja"]], "Dolo\u010ditev domen in aktivnosti proteina": [[91, "dolocitev-domen-in-aktivnosti-proteina"]], "Iskanje homologov in oblikovanje filogenetskega drevesa": [[91, "iskanje-homologov-in-oblikovanje-filogenetskega-drevesa"]], "Analiza interakcij proteina in sestavljanje strukture": [[91, "analiza-interakcij-proteina-in-sestavljanje-strukture"]], "s21": [[93, "s21"]], "S21": [[93, "id1"]], "Dolo\u010ditev strukture in njenih zna\u010dilnosti": [[93, "dolocitev-strukture-in-njenih-znacilnosti"]], "Funkcije proteina": [[93, "funkcije-proteina"]], "Ohranjenost regij": [[93, "ohranjenost-regij"]], "Filogenetsko drevo": [[93, "filogenetsko-drevo"], [97, "filogenetsko-drevo"], [131, "filogenetsko-drevo"]], "S22": [[95, "s22"]], "Vklju\u010dek": [[95, "vkljucek"]], "Iskanje proteina z najvi\u0161jim ujemanjem": [[95, "iskanje-proteina-z-najvisjim-ujemanjem"]], "Iskanje proteina v zbirki Uniprot": [[95, "iskanje-proteina-v-zbirki-uniprot"]], "Ime proteina in izvorni organizem": [[95, "ime-proteina-in-izvorni-organizem"]], "Funkcija in substrat": [[95, "funkcija-in-substrat"]], "Protein trehalaza (Uniprot ID: A0A168ERE8):": [[95, "protein-trehalaza-uniprot-id-a0a168ere8"]], "Protein glukoamilaza (Uniprot ID: A0A098YFK5):": [[95, "protein-glukoamilaza-uniprot-id-a0a098yfk5"]], "Protein trehalaza (Uniprot ID: A0AA35SZ10):": [[95, "protein-trehalaza-uniprot-id-a0aa35sz10"]], "Protein: Protein 15 iz dru\u017eine hidrolaz (Uniprot ID: W7DS40):": [[95, "protein-protein-15-iz-druzine-hidrolaz-uniprot-id-w7ds40"]], "S23": [[97, "s23"]], "Iskanje aminokislinskega zaporedja": [[97, "iskanje-aminokislinskega-zaporedja"]], "Iskanje podobnega evkariontskega proteina": [[97, "iskanje-podobnega-evkariontskega-proteina"]], "Analiza z InterPro": [[97, "analiza-z-interpro"]], "Splo\u0161ne lastnosti proteina": [[97, "splosne-lastnosti-proteina"]], "Poravnava z evkariontskim peroksiredoksinom": [[97, "poravnava-z-evkariontskim-peroksiredoksinom"]], "S24": [[99, "s24"]], "Postopek iskanja": [[99, "postopek-iskanja"]], "Poravnava izhodnega in dodeljenega zaporedja": [[99, "poravnava-izhodnega-in-dodeljenega-zaporedja"]], "Identifikacija inserta": [[99, "identifikacija-inserta"]], "Iskanje homologov": [[99, "iskanje-homologov"]], "Zbrani rezultati": [[99, "zbrani-rezultati"]], "Ime proteina in izvorni organizem (v [ ])": [[99, "ime-proteina-in-izvorni-organizem-v"]], "Najbolj in najmanj ohranjene regije:": [[99, "id1"], [137, "najbolj-in-najmanj-ohranjene-regije"]], "Model strukture:": [[99, "model-strukture"]], "S26": [[103, "s26"]], "Posttranslacijske modifikacije": [[103, "posttranslacijske-modifikacije"], [148, "posttranslacijske-modifikacije"]], "Podobni eukariontski proteini": [[103, "podobni-eukariontski-proteini"]], "S27": [[105, "s27"]], "S28": [[107, "s28"]], "IME, VELIKOST IN IZVORNI ORGANIZEM PROTEINA": [[107, "ime-velikost-in-izvorni-organizem-proteina"]], "Potek analize:": [[107, "potek-analize"], [107, "id1"], [107, "id2"], [107, "id3"], [107, "id4"], [107, "id5"], [107, "id6"]], "ZGRADBA PROTEINA, FUNKCIJE IN OHRANJENOST REGIJ": [[107, "zgradba-proteina-funkcije-in-ohranjenost-regij"]], "POST-TRANSLACIJSKE MODIFIKACIJE": [[107, "post-translacijske-modifikacije"]], "INTERAKCIJE": [[107, "interakcije"]], "S29": [[109, "s29"]], "Iskanje in zna\u010dilnosti": [[109, "iskanje-in-znacilnosti"]], "Iskanje vstavljenega fragmenta": [[109, "iskanje-vstavljenega-fragmenta"]], "Iskanje proteina z blastx": [[109, "iskanje-proteina-z-blastx"]], "Iskanje z blastx po non-redundant bazi": [[109, "iskanje-z-blastx-po-non-redundant-bazi"]], "Podobni proteini v UniProtu": [[109, "podobni-proteini-v-uniprotu"]], "Domenska zgradba proteina": [[109, "domenska-zgradba-proteina"]], "Primerjave": [[109, "primerjave"]], "Primerjava s podobnimi proteini in filogenetsko drevo": [[109, "primerjava-s-podobnimi-proteini-in-filogenetsko-drevo"]], "Primerjava z evkariontskimi organizmi": [[109, "primerjava-z-evkariontskimi-organizmi"]], "Struktura proteina": [[109, "struktura-proteina"], [125, "struktura-proteina"]], "S30": [[111, "s30"]], "Povezava do datoteke z vhodnim podatkom: S30": [[111, "povezava-do-datoteke-z-vhodnim-podatkom-s30"]], "S31": [[113, "s31"]], "Povezava do datoteke z vhodnim podatkom: S32": [[115, "povezava-do-datoteke-z-vhodnim-podatkom-s32"]], "Potencialna funkcijska povezanost z drugimi proteini": [[115, "potencialna-funkcijska-povezanost-z-drugimi-proteini"], [131, "potencialna-funkcijska-povezanost-z-drugimi-proteini"]], "S33": [[117, "s33"]], "Nukleotidno zaporedje vklju\u010dka": [[117, "nukleotidno-zaporedje-vkljucka"], [129, "nukleotidno-zaporedje-vkljucka"]], "FecD sodeluje z drugimi komponentami Fec transportnega sistema. FecA deluje kot receptor na zunanji membrani, ki ve\u017ee Fe(3+)-dicitrat iz zunajceli\u010dnega okolja. FecB je periplazemski protein, ki prena\u0161a vezani Fe(3+)-dicitrat od FecA do FecC-FecD kompleksa v notranji membrani. FecE, ATP-aza, zagotavlja energijo za transport s hidrolizo ATP.": [[117, "fecd-sodeluje-z-drugimi-komponentami-fec-transportnega-sistema-feca-deluje-kot-receptor-na-zunanji-membrani-ki-veze-fe-3-dicitrat-iz-zunajcelicnega-okolja-fecb-je-periplazemski-protein-ki-prenasa-vezani-fe-3-dicitrat-od-feca-do-fecc-fecd-kompleksa-v-notranji-membrani-fece-atp-aza-zagotavlja-energijo-za-transport-s-hidrolizo-atp"]], "Podobni evkarionti": [[117, "podobni-evkarionti"], [129, "podobni-evkarionti"]], "Struktura oz. model sturkture": [[117, "struktura-oz-model-sturkture"], [129, "struktura-oz-model-sturkture"]], "S34": [[119, "s34"]], "S35": [[121, "s35"]], "1. Identifikacija vklju\u010dka": [[121, "identifikacija-vkljucka"]], "2. Lastnosti proteina": [[121, "lastnosti-proteina"], [125, "lastnosti-proteina"]], "3. Funkcija proteina in funkcijska povezanost z drugimi proteini": [[121, "funkcija-proteina-in-funkcijska-povezanost-z-drugimi-proteini"]], "4. Sorodni proteini": [[121, "sorodni-proteini"], [125, "sorodni-proteini"]], "5. Identifikacija ohranjenih domen": [[121, "identifikacija-ohranjenih-domen"]], "6. Podobni evkariontski proteini": [[121, "podobni-evkariontski-proteini"]], "7. Struktura proteina": [[121, "struktura-proteina"]], "Viri in orodja": [[121, "viri-in-orodja"]], "S36": [[123, "s36"]], "Lokalizacija, topologija:": [[123, "lokalizacija-topologija"]], "Ohranjene regije:": [[123, "ohranjene-regije"]], "S37": [[125, "s37"]], "1. Identifikacija zapisa na vklju\u010dku": [[125, "identifikacija-zapisa-na-vkljucku"]], "3. Funkcija proteina": [[125, "funkcija-proteina"]], "5. Filogenetsko drevo": [[125, "filogenetsko-drevo"]], "4. Domenska zgradba proteina in ohranjenost domen": [[125, "domenska-zgradba-proteina-in-ohranjenost-domen"]], "5. Medproteinske interakcije": [[125, "medproteinske-interakcije"], [144, "medproteinske-interakcije"]], "S38": [[127, "s38"]], "Lokalizacija in topologija": [[127, "lokalizacija-in-topologija"], [141, "lokalizacija-in-topologija"]], "Struktura oz. model strukture": [[127, "struktura-oz-model-strukture"]], "S39": [[129, "s39"]], "S40": [[131, "s40"]], "Identifikacija vklju\u010dka": [[131, "identifikacija-vkljucka"]], "Izvorni organizem proteina": [[131, "izvorni-organizem-proteina"]], "Ostali mo\u017eni izvorni organizmi": [[131, "ostali-mozni-izvorni-organizmi"]], "Ostale mo\u017ene lokalizacije": [[131, "ostale-mozne-lokalizacije"]], "Poravnava": [[131, "poravnava"], [162, "poravnava"]], "Sorodni evkariontski proteini": [[131, "sorodni-evkariontski-proteini"], [131, "id1"]], "Organizem": [[131, "organizem"]], "Imena proteinov": [[131, "imena-proteinov"]], "S41\\": [[133, "s41"]], "Vhodni podatek\\": [[133, "vhodni-podatek"]], "Rezultati analiz\\": [[133, "rezultati-analiz"]], "Poravnava \\": [[133, "poravnava"]], "Identifikacija\\": [[133, "identifikacija"]], "Sorodni proteini\\": [[133, "sorodni-proteini"]], "Podobni evkariontski proteini\\": [[133, "podobni-evkariontski-proteini"]], "Funkcijska povezanost s proteini\\": [[133, "funkcijska-povezanost-s-proteini"]], "Strukturna karakterizacija\\": [[133, "strukturna-karakterizacija"]], "Superpozicija\\": [[133, "superpozicija"]], "S42": [[135, "s42"]], "Zporedje vklju\u010dka:": [[135, "zporedje-vkljucka"]], "Lastnosti in velikost proteina:": [[135, "lastnosti-in-velikost-proteina"]], "Sorodni proteini:": [[135, "sorodni-proteini"]], "Lokalizacja, topologija:": [[135, "lokalizacja-topologija"]], "Domenska zgradba:": [[135, "domenska-zgradba"], [137, "domenska-zgradba"]], "Postranslacijske mosifikacije": [[135, "postranslacijske-mosifikacije"]], "Funkcija proteina:": [[135, "funkcija-proteina"], [137, "funkcija-proteina"]], "Aktivno mesto:": [[135, "aktivno-mesto"]], "Poravnava ve\u010d zaporedij:": [[135, "poravnava-vec-zaporedij"]], "Filogenetsko drevo:": [[135, "filogenetsko-drevo"]], "Evkariontski protein:": [[135, "evkariontski-protein"]], "Povezave z ostalimi proteini:": [[135, "povezave-z-ostalimi-proteini"]], "Alphafold:": [[135, "alphafold"]], "Chimera:": [[135, "chimera"]], "S43": [[137, "s43"]], "Ime in izvorni organizem proteina:": [[137, "ime-in-izvorni-organizem-proteina"]], "Lokalizacija,topologija:": [[137, "lokalizacija-topologija"]], "Velikost proteina:": [[137, "velikost-proteina"]], "Posttranslacijske modifikacije:": [[137, "posttranslacijske-modifikacije"]], "Sorodni proteini,poravnava,filogenetsko drevo:": [[137, "sorodni-proteini-poravnava-filogenetsko-drevo"]], "Aminokislinsko zaporedje proteina": [[137, "aminokislinsko-zaporedje-proteina"]], "Slika iz Alphafold-a": [[137, "slika-iz-alphafold-a"]], "Slika iz Chimere:": [[137, "slika-iz-chimere"]], "S44": [[139, "s44"]], "Moj protein": [[139, "moj-protein"]], "Podoben protein": [[139, "podoben-protein"]], "Funkcijska podobnost": [[139, "funkcijska-podobnost"]], "S45": [[141, "s45"]], "Ime in izvorni organizem": [[141, "ime-in-izvorni-organizem"]], "Potencialna funkcijska povezanost z drugimi proteini, medproteinske interakcije": [[141, "potencialna-funkcijska-povezanost-z-drugimi-proteini-medproteinske-interakcije"]], "S47": [[144, "s47"]], "1. Identifikacija proteina": [[144, "identifikacija-proteina"]], "2. Osnovni podatki proteina": [[144, "osnovni-podatki-proteina"]], "3. Sorodni proteini": [[144, "sorodni-proteini"]], "6. Struktura proteina": [[144, "struktura-proteina"]], "S48": [[146, "s48"]], "Povezava do datoteke z vhodnim podatkom: S48": [[146, "povezava-do-datoteke-z-vhodnim-podatkom-s48"]], "1. Identifikacija pozicije MKR (Multiple konirne regije)": [[146, "identifikacija-pozicije-mkr-multiple-konirne-regije"]], "2. Iskanje z proteina": [[146, "iskanje-z-proteina"]], "Blastx": [[146, "blastx"]], "Blastp": [[146, "blastp"]], "3. Priprava modela AlphaFold3": [[146, "priprava-modela-alphafold3"]], "4. Analiza proteina": [[146, "analiza-proteina"]], "Za\u010detek dela in osnove ugotovitve": [[148, "zacetek-dela-in-osnove-ugotovitve"]], "Aminokislinsko zaporedje dobljenega proteina": [[148, "aminokislinsko-zaporedje-dobljenega-proteina"]], "Domene": [[148, "domene"]], "Ohranjenost in mutacije": [[148, "ohranjenost-in-mutacije"]], "Predvidevanje strukture: Alphafold": [[148, "predvidevanje-strukture-alphafold"]], "Skupine in termini": [[149, "skupine-in-termini"]], "Splo\u0161ne informacije": [[149, "splosne-informacije"]], "Problem in naloga": [[149, "problem-in-naloga"]], "Navodila za izdelavo seminarske naloge": [[149, "navodila-za-izdelavo-seminarske-naloge"]], "Oddane naloge": [[149, "oddane-naloge"]], "VAJA: Iskanje podobnih zaporedij z BLAST": [[151, "vaja-iskanje-podobnih-zaporedij-z-blast"]], "Naloga 1: enostavno iskanje": [[151, "naloga-1-enostavno-iskanje"]], "Naloga 2: homologi": [[151, "naloga-2-homologi"]], "Naloga 3: iskanje s kratkim zaporedjem": [[151, "naloga-3-iskanje-s-kratkim-zaporedjem"]], "Naloga 4: ortologi": [[151, "naloga-4-ortologi"]], "Naloga 5: virusni genom": [[151, "naloga-5-virusni-genom"]], "Naloga 6: PSI-BLAST": [[151, "naloga-6-psi-blast"]], "VAJA: To\u010dkovni diagram": [[152, "vaja-tockovni-diagram"]], "Naloga 1: primerjava dveh kraj\u0161ih zaporedij": [[152, "naloga-1-primerjava-dveh-krajsih-zaporedij"]], "Naloga 2: Primerjava genomskih zaporedij": [[152, "naloga-2-primerjava-genomskih-zaporedij"]], "VAJA: Programski dostop do GenBank (Python)": [[153, "vaja-programski-dostop-do-genbank-python"], [167, "vaja-programski-dostop-do-genbank-python"]], "Zgledi": [[153, "zgledi"], [163, "zgledi"], [165, "zgledi"], [168, "zgledi"]], "Dostop do GenBank": [[153, "dostop-do-genbank"]], "Shranjevanje zapisa v datoteko": [[153, "shranjevanje-zapisa-v-datoteko"]], "Ekstrakcija dela zapisa in prevajanje": [[153, "ekstrakcija-dela-zapisa-in-prevajanje"]], "Naloga": [[153, "naloga"], [153, "id1"], [154, "naloga"], [155, "naloga"], [156, "naloga"], [157, "naloga"], [159, "naloga"], [159, "id2"], [160, "naloga"], [161, "naloga"], [163, "naloga"], [168, "naloga"]], "Ozadje": [[153, "ozadje"], [159, "ozadje"], [159, "id1"], [168, "ozadje"], [169, "ozadje"]], "Namigi": [[153, "namigi"]], "V razmislek": [[153, "v-razmislek"]], "VAJA: Dostop do GenBank v brskalniku": [[154, "vaja-dostop-do-genbank-v-brskalniku"]], "VAJA: Grafi in program Cytoscape": [[155, "vaja-grafi-in-program-cytoscape"]], "Postopek": [[155, "postopek"]], "VAJA: Izra\u010dun matrike zamenjav (Python)": [[156, "vaja-izracun-matrike-zamenjav-python"]], "Primer kode": [[156, "primer-kode"]], "VAJA: Modeliranje na osnovi homologije": [[157, "vaja-modeliranje-na-osnovi-homologije"], [158, "vaja-modeliranje-na-osnovi-homologije"]], "SWISS-MODEL": [[157, "swiss-model"], [158, "swiss-model"]], "AlphaFold2": [[157, "alphafold2"], [158, "alphafold2"]], "Naloga 1": [[158, "naloga-1"], [164, "naloga-1"], [166, "naloga-1"], [169, "naloga-1"]], "Naloga 2": [[158, "naloga-2"], [164, "naloga-2"], [166, "naloga-2"], [169, "naloga-2"]], "VAJA: Poravnave ve\u010d zaporedij": [[159, "vaja-poravnave-vec-zaporedij"]], "Naloga 1: enostavna poravnava ve\u010d zaporedij": [[159, "naloga-1-enostavna-poravnava-vec-zaporedij"]], "Naloga 2: klasifikacija domen": [[159, "naloga-2-klasifikacija-domen"]], "Naloga 3: povezava med HIV in SIV": [[159, "naloga-3-povezava-med-hiv-in-siv"]], "VAJA: Enostavna analiza nt-zaporedja (Python)": [[160, "vaja-enostavna-analiza-nt-zaporedja-python"]], "Teoreti\u010dno ozadje": [[160, "teoreticno-ozadje"]], "Primeri kode": [[160, "primeri-kode"]], "VAJA: Iskanje podobnih struktur": [[161, "vaja-iskanje-podobnih-struktur"]], "DEMO: Izra\u010dun lastne matrike in njena uporaba": [[162, "demo-izracun-lastne-matrike-in-njena-uporaba"]], "Izra\u010dun matrike": [[162, "izracun-matrike"]], "VAJA: Poravnava zaporedij NW & SW (Python)": [[163, "vaja-poravnava-zaporedij-nw-sw-python"]], "Definicija zaporedja": [[163, "definicija-zaporedja"]], "Izbor matrike zamenjav": [[163, "izbor-matrike-zamenjav"]], "Globalna poravnava": [[163, "globalna-poravnava"]], "Lokalna poravnava": [[163, "lokalna-poravnava"]], "Globalna in lokalna poravnava aminokislinskih zaporedij": [[163, "globalna-in-lokalna-poravnava-aminokislinskih-zaporedij"]], "VAJA: Poravnava zaporedij NW & SW (spletna orodja)": [[164, "vaja-poravnava-zaporedij-nw-sw-spletna-orodja"]], "Izbor na\u010dina poravnave": [[164, "izbor-nacina-poravnave"]], "Primerjava poravnav": [[164, "primerjava-poravnav"]], "DEMO: Programski dostop do PubMed": [[165, "demo-programski-dostop-do-pubmed"]], "BioPython": [[165, "biopython"]], "Modul Bio.Entrez": [[165, "modul-bio-entrez"]], "Seznam zbirk": [[165, "seznam-zbirk"]], "Iskanje": [[165, "iskanje"]], "Prenos zapisov": [[165, "prenos-zapisov"]], "Izpis dela zapisa": [[165, "izpis-dela-zapisa"]], "Shranjevanje rezultatov v CSV": [[165, "shranjevanje-rezultatov-v-csv"]], "Drugi na\u010dini programskega 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Oddane naloge

1

Kociper, Debora

S08

-

S08

+

S08

1

Kolenc, Klara