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environment.yml
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environment.yml
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name: cogtext
channels:
- conda-forge
- defaults
dependencies:
# dev tools
- python
- pip
- dvc
- ipykernel
- ipywidgets
- flake8
- python-dotenv
- watermark
- tqdm
# data
- xmltodict
- pandas
- polars
- pyarrow
# visualization
- matplotlib
- seaborn
- wordcloud
# deep learning and NLP
- pytorch
- sentence-transformers
- safetensors
# ML
- scikit-learn
- hdbscan
- umap-learn
# ontologies
- owlready2
- rdflib
# the rest
# - python-igraph
# - pydot # keras uses pydot to plot models
# - cairocffi # igraph requires cairo binding
# - cairo
# - pip:
# - dask[dataframe]
# - openai
# - gensim
# - nltk
# - spacy
# - pyldavis # visualize topic models
# - spacy-streamlit
# - python-Levenshtein # used by gensim
# - bokeh
# - pyvis
# - tensorflow
# - tensorflow-probability
# - umap-learn[parametric_umap] # parametric UMAP
# - top2vec # deep topic modeling
# - pigeon-jupyter # annotation
# - pigeonXT-jupyter # improved annotation
# - sympy # symbolic math and matrix ranks
# - tensorflow_hub # to access pretrained models of tf-hub