build.yml

name: build
on: [push]

jobs:
  build:
    runs-on: ubuntu-latest
    container: bioconductor/bioconductor_docker:RELEASE_3_12
    steps:
      - uses: actions/checkout@v1

      - name: Install dependencies
        run: |
          apt-get update
          apt-get install -y --no-install-recommends \
          apt-utils \
          libglpk-dev \
          libcurl4-openssl-dev \
          libxml2-dev \
          libssl-dev && \
          apt-get clean && \
          rm -rf /var/lib/apt/lists/*

      - name: Install hypeR
        run: |
          options(repos = c(CRAN = "https://cran.r-project.org"))
          BiocManager::repositories()
          remotes::install_deps(dependencies = TRUE, repos = BiocManager::repositories())
          remotes::install_bioc("BiocStyle")
          remotes::install_cran("rcmdcheck")
        shell: Rscript {0}

      - name: Check
        env:
          _R_CHECK_CRAN_INCOMING_REMOTE_: false
        run: rcmdcheck::rcmdcheck(args = c("--no-manual"), error_on = "warning", check_dir = "check")
        shell: Rscript {0}