pyproject.toml

[tool.poetry]
name = "pheval-phen2gene"
version = "0.1.3"
description = ""
authors = ["Yasemin Bridges <y.bridges@qmul.ac.uk>"]
readme = "README.md"
packages = [{include = "pheval_phen2gene", from = "src"}]

[tool.poetry.dependencies]
python = ">=3.9,<4.0.0"
click = "^8.1.3"
pandas = "^1.5.2"
oaklib = ">=0.5.6"
docker = "^6.0.1"
matplotlib = "^3.7.1"
numpy = "^1.24.2"
wheel = "^0.40.0"
pydantic = "^1.10.7"
pheval = "^0.4.0"

[tool.poetry.dev-dependencies]
pytest = "^7.1.2"
pylint = "^2.15.6"
pycodestyle = "^2.10.0"
coverage = "^6.5.0"


[tool.pytest.ini_options]
 pythonpath = [
     "src"
 ]

[tool.poetry.scripts]
pheval-phen2gene = "pheval_phen2gene.cli:main"

[tool.poetry.plugins."pheval.plugins"]
phen2gene = "pheval_phen2gene.runner:Phen2GenePhEvalRunner"

[tool.black]
line-length = 100
target-version = ["py39", "py310"]

[tool.isort]
profile = "black"
multi_line_output = 3
line_length = 100
include_trailing_comma = true
reverse_relative = true

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"