From 653291d119a5fffb31b2779b8a52221dadfea50e Mon Sep 17 00:00:00 2001
From: Leonardo macOS <leonardochimirri94@gmail.com>
Date: Wed, 18 Sep 2024 14:08:17 +0200
Subject: [PATCH] adding poetry lock because #66 gave: pyproject.toml changed
 significantly since poetry.lock was last generated. Run poetry lock
 [--no-update] to fix the lock file.

---
 poetry.lock | 3787 ++++++++++++++++++++++++++-------------------------
 1 file changed, 1955 insertions(+), 1832 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 80aa9b1e..f75f4383 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,13 +1,13 @@
-# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand.
 
 [[package]]
 name = "adeft"
-version = "0.11.2"
+version = "0.12.3"
 description = "Acromine based Disambiguation of Entities From Text"
 optional = false
-python-versions = "*"
+python-versions = ">=3.7"
 files = [
-    {file = "adeft-0.11.2.tar.gz", hash = "sha256:bf9b239d7989217b7d673eaf46ac2e8c1bfc97a0aac9a75cc2231e07438fc0a5"},
+    {file = "adeft-0.12.3.tar.gz", hash = "sha256:3106eb30e5a655caf67db8433b265afa3f292e99bcdf76a720d0c180d2d4b8bb"},
 ]
 
 [package.dependencies]
@@ -15,108 +15,135 @@ appdirs = "*"
 boto3 = "*"
 flask = "*"
 nltk = "*"
-scikit-learn = ">=0.20.0"
+scikit-learn = ">=1.0"
 
 [package.extras]
 test = ["pytest", "pytest-cov"]
 
 [[package]]
 name = "aiofiles"
-version = "23.2.1"
+version = "24.1.0"
 description = "File support for asyncio."
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "aiofiles-23.2.1-py3-none-any.whl", hash = "sha256:19297512c647d4b27a2cf7c34caa7e405c0d60b5560618a29a9fe027b18b0107"},
-    {file = "aiofiles-23.2.1.tar.gz", hash = "sha256:84ec2218d8419404abcb9f0c02df3f34c6e0a68ed41072acfb1cef5cbc29051a"},
+    {file = "aiofiles-24.1.0-py3-none-any.whl", hash = "sha256:b4ec55f4195e3eb5d7abd1bf7e061763e864dd4954231fb8539a0ef8bb8260e5"},
+    {file = "aiofiles-24.1.0.tar.gz", hash = "sha256:22a075c9e5a3810f0c2e48f3008c94d68c65d763b9b03857924c99e57355166c"},
 ]
 
 [[package]]
-name = "aiohttp"
-version = "3.9.5"
-description = "Async http client/server framework (asyncio)"
+name = "aiohappyeyeballs"
+version = "2.4.0"
+description = "Happy Eyeballs for asyncio"
 optional = false
 python-versions = ">=3.8"
 files = [
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+    {file = "aiohappyeyeballs-2.4.0-py3-none-any.whl", hash = "sha256:7ce92076e249169a13c2f49320d1967425eaf1f407522d707d59cac7628d62bd"},
+    {file = "aiohappyeyeballs-2.4.0.tar.gz", hash = "sha256:55a1714f084e63d49639800f95716da97a1f173d46a16dfcfda0016abb93b6b2"},
 ]
 
-[package.dependencies]
+[[package]]
+name = "aiohttp"
+version = "3.10.5"
+description = "Async http client/server framework (asyncio)"
+optional = false
+python-versions = ">=3.8"
+files = [
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+
+[package.dependencies]
+aiohappyeyeballs = ">=2.3.0"
 aiosignal = ">=1.1.2"
 async-timeout = {version = ">=4.0,<5.0", markers = "python_version < \"3.11\""}
 attrs = ">=17.3.0"
@@ -125,7 +152,7 @@ multidict = ">=4.5,<7.0"
 yarl = ">=1.0,<2.0"
 
 [package.extras]
-speedups = ["Brotli", "aiodns", "brotlicffi"]
+speedups = ["Brotli", "aiodns (>=3.2.0)", "brotlicffi"]
 
 [[package]]
 name = "aiosignal"
@@ -156,31 +183,6 @@ files = [
 dev = ["pytest (>=6.2,<7.0)", "pytest-cov (>=3.0,<4.0)", "pytest-mock (>=3.6,<4.0)"]
 parse = ["beautifulsoup4 (>=4.10.0,<5.0)", "requests (>=2.12.0,<3)"]
 
-[[package]]
-name = "altair"
-version = "5.3.0"
-description = "Vega-Altair: A declarative statistical visualization library for Python."
-optional = false
-python-versions = ">=3.8"
-files = [
-    {file = "altair-5.3.0-py3-none-any.whl", hash = "sha256:7084a1dab4d83c5e7e5246b92dc1b4451a6c68fd057f3716ee9d315c8980e59a"},
-    {file = "altair-5.3.0.tar.gz", hash = "sha256:5a268b1a0983b23d8f9129f819f956174aa7aea2719ed55a52eba9979b9f6675"},
-]
-
-[package.dependencies]
-jinja2 = "*"
-jsonschema = ">=3.0"
-numpy = "*"
-packaging = "*"
-pandas = ">=0.25"
-toolz = "*"
-typing-extensions = {version = ">=4.0.1", markers = "python_version < \"3.11\""}
-
-[package.extras]
-all = ["altair-tiles (>=0.3.0)", "anywidget (>=0.9.0)", "pyarrow (>=11)", "vega-datasets (>=0.9.0)", "vegafusion[embed] (>=1.6.6)", "vl-convert-python (>=1.3.0)"]
-dev = ["geopandas", "hatch", "ipython", "m2r", "mypy", "pandas-stubs", "pytest", "pytest-cov", "ruff (>=0.3.0)", "types-jsonschema", "types-setuptools"]
-doc = ["docutils", "jinja2", "myst-parser", "numpydoc", "pillow (>=9,<10)", "pydata-sphinx-theme (>=0.14.1)", "scipy", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinxext-altair"]
-
 [[package]]
 name = "aniso8601"
 version = "9.0.1"
@@ -197,13 +199,13 @@ dev = ["black", "coverage", "isort", "pre-commit", "pyenchant", "pylint"]
 
 [[package]]
 name = "annotated-types"
-version = "0.6.0"
+version = "0.7.0"
 description = "Reusable constraint types to use with typing.Annotated"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "annotated_types-0.6.0-py3-none-any.whl", hash = "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43"},
-    {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"},
+    {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"},
+    {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"},
 ]
 
 [[package]]
@@ -218,13 +220,13 @@ files = [
 
 [[package]]
 name = "anyio"
-version = "4.3.0"
+version = "4.4.0"
 description = "High level compatibility layer for multiple asynchronous event loop implementations"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "anyio-4.3.0-py3-none-any.whl", hash = "sha256:048e05d0f6caeed70d731f3db756d35dcc1f35747c8c403364a8332c630441b8"},
-    {file = "anyio-4.3.0.tar.gz", hash = "sha256:f75253795a87df48568485fd18cdd2a3fa5c4f7c5be8e5e36637733fce06fed6"},
+    {file = "anyio-4.4.0-py3-none-any.whl", hash = "sha256:c1b2d8f46a8a812513012e1107cb0e68c17159a7a594208005a57dc776e1bdc7"},
+    {file = "anyio-4.4.0.tar.gz", hash = "sha256:5aadc6a1bbb7cdb0bede386cac5e2940f5e2ff3aa20277e991cf028e0585ce94"},
 ]
 
 [package.dependencies]
@@ -283,8 +285,8 @@ files = [
 lazy-object-proxy = ">=1.4.0"
 typing-extensions = {version = ">=4.0.0", markers = "python_version < \"3.11\""}
 wrapt = [
-    {version = ">=1.11,<2", markers = "python_version < \"3.11\""},
     {version = ">=1.14,<2", markers = "python_version >= \"3.11\""},
+    {version = ">=1.11,<2", markers = "python_version < \"3.11\""},
 ]
 
 [[package]]
@@ -300,32 +302,32 @@ files = [
 
 [[package]]
 name = "attrs"
-version = "23.2.0"
+version = "24.2.0"
 description = "Classes Without Boilerplate"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "attrs-23.2.0-py3-none-any.whl", hash = "sha256:99b87a485a5820b23b879f04c2305b44b951b502fd64be915879d77a7e8fc6f1"},
-    {file = "attrs-23.2.0.tar.gz", hash = "sha256:935dc3b529c262f6cf76e50877d35a4bd3c1de194fd41f47a2b7ae8f19971f30"},
+    {file = "attrs-24.2.0-py3-none-any.whl", hash = "sha256:81921eb96de3191c8258c199618104dd27ac608d9366f5e35d011eae1867ede2"},
+    {file = "attrs-24.2.0.tar.gz", hash = "sha256:5cfb1b9148b5b086569baec03f20d7b6bf3bcacc9a42bebf87ffaaca362f6346"},
 ]
 
 [package.extras]
-cov = ["attrs[tests]", "coverage[toml] (>=5.3)"]
-dev = ["attrs[tests]", "pre-commit"]
-docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope-interface"]
-tests = ["attrs[tests-no-zope]", "zope-interface"]
-tests-mypy = ["mypy (>=1.6)", "pytest-mypy-plugins"]
-tests-no-zope = ["attrs[tests-mypy]", "cloudpickle", "hypothesis", "pympler", "pytest (>=4.3.0)", "pytest-xdist[psutil]"]
+benchmark = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-codspeed", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
+cov = ["cloudpickle", "coverage[toml] (>=5.3)", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
+dev = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
+docs = ["cogapp", "furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier (<24.7)"]
+tests = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
+tests-mypy = ["mypy (>=1.11.1)", "pytest-mypy-plugins"]
 
 [[package]]
 name = "bcp47"
-version = "0.0.4"
+version = "0.1.0"
 description = "Language tags made easy"
 optional = false
 python-versions = "*"
 files = [
-    {file = "bcp47-0.0.4-py3-none-any.whl", hash = "sha256:309d3bbaef8d6c9ac59d37ba2167cc6620b4e7467ec8f1e09641b659bb1c0c6d"},
-    {file = "bcp47-0.0.4.tar.gz", hash = "sha256:4878d2f3e697ef39ef3891a147280705e4377d5a8d7eb0702129b8d4a3718702"},
+    {file = "bcp47-0.1.0-py3-none-any.whl", hash = "sha256:a567b7fe881c900916a9db62ac8f792370c7ddf2664e601b74eeed35d8758aa5"},
+    {file = "bcp47-0.1.0.tar.gz", hash = "sha256:37cc7a03fd696149ebfe7de785c5bad473f911eddac8415cf479584049cf03d5"},
 ]
 
 [[package]]
@@ -380,17 +382,17 @@ files = [
 
 [[package]]
 name = "boto3"
-version = "1.34.101"
+version = "1.35.10"
 description = "The AWS SDK for Python"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "boto3-1.34.101-py3-none-any.whl", hash = "sha256:79b93f3370ea96ce838042bc2eac0c996aee204b01e7e6452eb77abcbe697d6a"},
-    {file = "boto3-1.34.101.tar.gz", hash = "sha256:1d854b5880e185db546b4c759fcb664bf3326275064d2b44229cc217e8be9d7e"},
+    {file = "boto3-1.35.10-py3-none-any.whl", hash = "sha256:add26dd58e076dfd387013da4704716d5cff215cf14f6d4347c4b9b7fc1f0b8e"},
+    {file = "boto3-1.35.10.tar.gz", hash = "sha256:189ab1e2b4cd86df56f82438d89b4040eb140c92683f1bda7cb2e62624f20ea5"},
 ]
 
 [package.dependencies]
-botocore = ">=1.34.101,<1.35.0"
+botocore = ">=1.35.10,<1.36.0"
 jmespath = ">=0.7.1,<2.0.0"
 s3transfer = ">=0.10.0,<0.11.0"
 
@@ -399,13 +401,13 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"]
 
 [[package]]
 name = "botocore"
-version = "1.34.101"
+version = "1.35.10"
 description = "Low-level, data-driven core of boto 3."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "botocore-1.34.101-py3-none-any.whl", hash = "sha256:f145e8b4b8fc9968f5eb695bdc2fcc8e675df7fbc3c56102dc1f5471be6baf35"},
-    {file = "botocore-1.34.101.tar.gz", hash = "sha256:01f3802d25558dd7945d83884bf6885e2f84e1ff27f90b5f09614966fe18c18f"},
+    {file = "botocore-1.35.10-py3-none-any.whl", hash = "sha256:0d96d023b9b0cea99a0a428a431d011329d3a958730aee6ed6a6fec5d9bfbc03"},
+    {file = "botocore-1.35.10.tar.gz", hash = "sha256:6c8a1377b6636a0d80218115e1cd41bcceba0a2f050b79c206f4cf8d002c54d7"},
 ]
 
 [package.dependencies]
@@ -414,33 +416,32 @@ python-dateutil = ">=2.1,<3.0.0"
 urllib3 = {version = ">=1.25.4,<2.2.0 || >2.2.0,<3", markers = "python_version >= \"3.10\""}
 
 [package.extras]
-crt = ["awscrt (==0.20.9)"]
+crt = ["awscrt (==0.21.2)"]
 
 [[package]]
 name = "cachetools"
-version = "5.3.3"
+version = "5.5.0"
 description = "Extensible memoizing collections and decorators"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "cachetools-5.3.3-py3-none-any.whl", hash = "sha256:0abad1021d3f8325b2fc1d2e9c8b9c9d57b04c3932657a72465447332c24d945"},
-    {file = "cachetools-5.3.3.tar.gz", hash = "sha256:ba29e2dfa0b8b556606f097407ed1aa62080ee108ab0dc5ec9d6a723a007d105"},
+    {file = "cachetools-5.5.0-py3-none-any.whl", hash = "sha256:02134e8439cdc2ffb62023ce1debca2944c3f289d66bb17ead3ab3dede74b292"},
+    {file = "cachetools-5.5.0.tar.gz", hash = "sha256:2cc24fb4cbe39633fb7badd9db9ca6295d766d9c2995f245725a46715d050f2a"},
 ]
 
 [[package]]
 name = "cachier"
-version = "3.0.0"
+version = "3.0.1"
 description = "Persistent, stale-free, local and cross-machine caching for Python functions."
 optional = false
 python-versions = "*"
 files = [
-    {file = "cachier-3.0.0-py3-none-any.whl", hash = "sha256:627455077d3619a27b1c63368d49533ffe6807a1b19fe6944e4c8f3ac895d1bc"},
-    {file = "cachier-3.0.0.tar.gz", hash = "sha256:f756ebeabf8b397f75fbbb9a5841972d4c85a81b7313e2812b3448e80d74c66d"},
+    {file = "cachier-3.0.1-py3-none-any.whl", hash = "sha256:f900d11d8e190bdea8c04196a2487ac862263d3ec85c50c7283f4f9a58d2e0aa"},
+    {file = "cachier-3.0.1.tar.gz", hash = "sha256:115dd9586f0f786898526f65308a55df4304e2e213dd70309eb33e7d4d38a95c"},
 ]
 
 [package.dependencies]
 portalocker = ">=2.3.2"
-setuptools = ">=67.6.0"
 watchdog = ">=2.3.1"
 
 [[package]]
@@ -456,13 +457,13 @@ files = [
 
 [[package]]
 name = "cattrs"
-version = "23.2.3"
+version = "24.1.0"
 description = "Composable complex class support for attrs and dataclasses."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "cattrs-23.2.3-py3-none-any.whl", hash = "sha256:0341994d94971052e9ee70662542699a3162ea1e0c62f7ce1b4a57f563685108"},
-    {file = "cattrs-23.2.3.tar.gz", hash = "sha256:a934090d95abaa9e911dac357e3a8699e0b4b14f8529bcc7d2b1ad9d51672b9f"},
+    {file = "cattrs-24.1.0-py3-none-any.whl", hash = "sha256:043bb8af72596432a7df63abcff0055ac0f198a4d2e95af8db5a936a7074a761"},
+    {file = "cattrs-24.1.0.tar.gz", hash = "sha256:8274f18b253bf7674a43da851e3096370d67088165d23138b04a1c04c8eaf48e"},
 ]
 
 [package.dependencies]
@@ -474,6 +475,7 @@ typing-extensions = {version = ">=4.1.0,<4.6.3 || >4.6.3", markers = "python_ver
 bson = ["pymongo (>=4.4.0)"]
 cbor2 = ["cbor2 (>=5.4.6)"]
 msgpack = ["msgpack (>=1.0.5)"]
+msgspec = ["msgspec (>=0.18.5)"]
 orjson = ["orjson (>=3.9.2)"]
 pyyaml = ["pyyaml (>=6.0)"]
 tomlkit = ["tomlkit (>=0.11.8)"]
@@ -481,13 +483,13 @@ ujson = ["ujson (>=5.7.0)"]
 
 [[package]]
 name = "certifi"
-version = "2024.2.2"
+version = "2024.8.30"
 description = "Python package for providing Mozilla's CA Bundle."
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"},
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+    {file = "certifi-2024.8.30-py3-none-any.whl", hash = "sha256:922820b53db7a7257ffbda3f597266d435245903d80737e34f8a45ff3e3230d8"},
+    {file = "certifi-2024.8.30.tar.gz", hash = "sha256:bec941d2aa8195e248a60b31ff9f0558284cf01a52591ceda73ea9afffd69fd9"},
 ]
 
 [[package]]
@@ -650,23 +652,6 @@ files = [
 [package.dependencies]
 colorama = {version = "*", markers = "platform_system == \"Windows\""}
 
-[[package]]
-name = "click-default-group"
-version = "1.2.4"
-description = "click_default_group"
-optional = false
-python-versions = ">=2.7"
-files = [
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-]
-
-[package.dependencies]
-click = "*"
-
-[package.extras]
-test = ["pytest"]
-
 [[package]]
 name = "colorama"
 version = "0.4.6"
@@ -680,66 +665,87 @@ files = [
 
 [[package]]
 name = "contourpy"
-version = "1.2.1"
+version = "1.3.0"
 description = "Python library for calculating contours of 2D quadrilateral grids"
 optional = false
 python-versions = ">=3.9"
 files = [
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 profile = ["gprof2dot (>=2022.7.29)"]
 
+[[package]]
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 [[package]]
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+    {file = "fonttools-4.53.1-cp39-cp39-win_amd64.whl", hash = "sha256:e5b708073ea3d684235648786f5f6153a48dc8762cdfe5563c57e80787c29fbb"},
+    {file = "fonttools-4.53.1-py3-none-any.whl", hash = "sha256:f1f8758a2ad110bd6432203a344269f445a2907dc24ef6bccfd0ac4e14e0d71d"},
+    {file = "fonttools-4.53.1.tar.gz", hash = "sha256:e128778a8e9bc11159ce5447f76766cefbd876f44bd79aff030287254e4752c4"},
 ]
 
 [package.extras]
@@ -1282,6 +1299,45 @@ files = [
     {file = "frozenlist-1.4.1.tar.gz", hash = "sha256:c037a86e8513059a2613aaba4d817bb90b9d9b6b69aace3ce9c877e8c8ed402b"},
 ]
 
+[[package]]
+name = "fsspec"
+version = "2024.6.1"
+description = "File-system specification"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "fsspec-2024.6.1-py3-none-any.whl", hash = "sha256:3cb443f8bcd2efb31295a5b9fdb02aee81d8452c80d28f97a6d0959e6cee101e"},
+    {file = "fsspec-2024.6.1.tar.gz", hash = "sha256:fad7d7e209dd4c1208e3bbfda706620e0da5142bebbd9c384afb95b07e798e49"},
+]
+
+[package.extras]
+abfs = ["adlfs"]
+adl = ["adlfs"]
+arrow = ["pyarrow (>=1)"]
+dask = ["dask", "distributed"]
+dev = ["pre-commit", "ruff"]
+doc = ["numpydoc", "sphinx", "sphinx-design", "sphinx-rtd-theme", "yarl"]
+dropbox = ["dropbox", "dropboxdrivefs", "requests"]
+full = ["adlfs", "aiohttp (!=4.0.0a0,!=4.0.0a1)", "dask", "distributed", "dropbox", "dropboxdrivefs", "fusepy", "gcsfs", "libarchive-c", "ocifs", "panel", "paramiko", "pyarrow (>=1)", "pygit2", "requests", "s3fs", "smbprotocol", "tqdm"]
+fuse = ["fusepy"]
+gcs = ["gcsfs"]
+git = ["pygit2"]
+github = ["requests"]
+gs = ["gcsfs"]
+gui = ["panel"]
+hdfs = ["pyarrow (>=1)"]
+http = ["aiohttp (!=4.0.0a0,!=4.0.0a1)"]
+libarchive = ["libarchive-c"]
+oci = ["ocifs"]
+s3 = ["s3fs"]
+sftp = ["paramiko"]
+smb = ["smbprotocol"]
+ssh = ["paramiko"]
+test = ["aiohttp (!=4.0.0a0,!=4.0.0a1)", "numpy", "pytest", "pytest-asyncio (!=0.22.0)", "pytest-benchmark", "pytest-cov", "pytest-mock", "pytest-recording", "pytest-rerunfailures", "requests"]
+test-downstream = ["aiobotocore (>=2.5.4,<3.0.0)", "dask-expr", "dask[dataframe,test]", "moto[server] (>4,<5)", "pytest-timeout", "xarray"]
+test-full = ["adlfs", "aiohttp (!=4.0.0a0,!=4.0.0a1)", "cloudpickle", "dask", "distributed", "dropbox", "dropboxdrivefs", "fastparquet", "fusepy", "gcsfs", "jinja2", "kerchunk", "libarchive-c", "lz4", "notebook", "numpy", "ocifs", "pandas", "panel", "paramiko", "pyarrow", "pyarrow (>=1)", "pyftpdlib", "pygit2", "pytest", "pytest-asyncio (!=0.22.0)", "pytest-benchmark", "pytest-cov", "pytest-mock", "pytest-recording", "pytest-rerunfailures", "python-snappy", "requests", "smbprotocol", "tqdm", "urllib3", "zarr", "zstandard"]
+tqdm = ["tqdm"]
+
 [[package]]
 name = "funowl"
 version = "0.2.3"
@@ -1329,38 +1385,6 @@ terms = ["indra", "obonet"]
 test = ["pandas", "pytest", "pytest-cov"]
 ui = ["flask-bootstrap", "flask-wtf"]
 
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-description = "Git Object Database"
-optional = false
-python-versions = ">=3.7"
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-
-[package.dependencies]
-smmap = ">=3.0.1,<6"
-
-[[package]]
-name = "gitpython"
-version = "3.1.43"
-description = "GitPython is a Python library used to interact with Git repositories"
-optional = false
-python-versions = ">=3.7"
-files = [
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-
-[package.dependencies]
-gitdb = ">=4.0.1,<5"
-
-[package.extras]
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-
 [[package]]
 name = "google"
 version = "3.0.0"
@@ -1375,21 +1399,6 @@ files = [
 [package.dependencies]
 beautifulsoup4 = "*"
 
-[[package]]
-name = "gpt4"
-version = "0.0.1"
-description = "A CLI for chatting with OpenAI's API."
-optional = false
-python-versions = "*"
-files = [
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-
-[package.dependencies]
-openai = "*"
-requests = "*"
-
 [[package]]
 name = "graphviz"
 version = "0.20.3"
@@ -1522,13 +1531,13 @@ trio = ["trio (>=0.22.0,<0.26.0)"]
 
 [[package]]
 name = "httpx"
-version = "0.27.0"
+version = "0.27.2"
 description = "The next generation HTTP client."
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -1543,139 +1552,212 @@ brotli = ["brotli", "brotlicffi"]
 cli = ["click (==8.*)", "pygments (==2.*)", "rich (>=10,<14)"]
 http2 = ["h2 (>=3,<5)"]
 socks = ["socksio (==1.*)"]
+zstd = ["zstandard (>=0.18.0)"]
+
+[[package]]
+name = "huggingface-hub"
+version = "0.24.6"
+description = "Client library to download and publish models, datasets and other repos on the huggingface.co hub"
+optional = false
+python-versions = ">=3.8.0"
+files = [
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+
+[package.dependencies]
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+fsspec = ">=2023.5.0"
+packaging = ">=20.9"
+pyyaml = ">=5.1"
+requests = "*"
+tqdm = ">=4.42.1"
+typing-extensions = ">=3.7.4.3"
+
+[package.extras]
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+inference = ["aiohttp", "minijinja (>=1.0)"]
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+tensorflow = ["graphviz", "pydot", "tensorflow"]
+tensorflow-testing = ["keras (<3.0)", "tensorflow"]
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+torch = ["safetensors[torch]", "torch"]
+typing = ["types-PyYAML", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3", "typing-extensions (>=4.8.0)"]
 
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 name = "idna"
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 description = "Internationalized Domain Names in Applications (IDNA)"
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-python-versions = ">=3.5"
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 [package.extras]
 i18n = ["Babel (>=2.7)"]
 
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+]
+
 [[package]]
 name = "jmespath"
 version = "1.0.1"
@@ -1942,24 +2094,24 @@ ply = "*"
 
 [[package]]
 name = "jsonpointer"
-version = "2.4"
+version = "3.0.0"
 description = "Identify specific nodes in a JSON document (RFC 6901)"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*"
+python-versions = ">=3.7"
 files = [
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-    {file = "jsonpointer-2.4.tar.gz", hash = "sha256:585cee82b70211fa9e6043b7bb89db6e1aa49524340dde8ad6b63206ea689d88"},
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+    {file = "jsonpointer-3.0.0.tar.gz", hash = "sha256:2b2d729f2091522d61c3b31f82e11870f60b68f43fbc705cb76bf4b832af59ef"},
 ]
 
 [[package]]
 name = "jsonschema"
-version = "4.22.0"
+version = "4.23.0"
 description = "An implementation of JSON Schema validation for Python"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "jsonschema-4.22.0-py3-none-any.whl", hash = "sha256:ff4cfd6b1367a40e7bc6411caec72effadd3db0bbe5017de188f2d6108335802"},
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+    {file = "jsonschema-4.23.0.tar.gz", hash = "sha256:d71497fef26351a33265337fa77ffeb82423f3ea21283cd9467bb03999266bc4"},
 ]
 
 [package.dependencies]
@@ -1978,7 +2130,7 @@ webcolors = {version = ">=1.11", optional = true, markers = "extra == \"format\"
 
 [package.extras]
 format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"]
-format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"]
+format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=24.6.0)"]
 
 [[package]]
 name = "jsonschema-specifications"
@@ -2011,13 +2163,13 @@ linkml-runtime = ">=1.1.24"
 
 [[package]]
 name = "kgcl-schema"
-version = "0.6.8"
+version = "0.6.9"
 description = "Schema for the KGCL project."
 optional = false
 python-versions = "<4.0,>=3.9"
 files = [
-    {file = "kgcl_schema-0.6.8-py3-none-any.whl", hash = "sha256:84deb921203c5b94c9fa6386e7fec24593162abbccdadeb78a5f7231c0c75803"},
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+    {file = "kgcl_schema-0.6.9.tar.gz", hash = "sha256:1bb0f9f13356df7b5c6ba9c73a7124dc897e525af49f40454dafd45bfca021bd"},
 ]
 
 [package.dependencies]
@@ -2141,13 +2293,13 @@ files = [
 
 [[package]]
 name = "lark"
-version = "1.1.9"
+version = "1.2.2"
 description = "a modern parsing library"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
 files = [
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+    {file = "lark-1.2.2.tar.gz", hash = "sha256:ca807d0162cd16cef15a8feecb862d7319e7a09bdb13aef927968e45040fed80"},
 ]
 
 [package.extras]
@@ -2204,13 +2356,13 @@ files = [
 
 [[package]]
 name = "linkml"
-version = "1.7.9"
+version = "1.8.3"
 description = "Linked Open Data Modeling Language"
 optional = false
 python-versions = "<4.0.0,>=3.8.1"
 files = [
-    {file = "linkml-1.7.9-py3-none-any.whl", hash = "sha256:7712cdd6342f781605ba32d97ad19f256d3dc211491f0196ff82ca43873fc492"},
-    {file = "linkml-1.7.9.tar.gz", hash = "sha256:1fd198057e86a87ec5f79a831fb0475ad56847d7633b5c6dacb0afcaf5a986f8"},
+    {file = "linkml-1.8.3-py3-none-any.whl", hash = "sha256:ced1af3055312d15335cfe8846847c0491519c9af28cce5ebd8e4e26e4361754"},
+    {file = "linkml-1.8.3.tar.gz", hash = "sha256:6bf65f3d6c4ce9e88af0fda71b954ae4c6f5e885f8b4d74c1090380d565e76ba"},
 ]
 
 [package.dependencies]
@@ -2223,7 +2375,7 @@ jinja2 = ">=3.1.0"
 jsonasobj2 = ">=1.0.3,<2.0.0"
 jsonschema = {version = ">=4.0.0", extras = ["format"]}
 linkml-dataops = "*"
-linkml-runtime = ">=1.7.4"
+linkml-runtime = ">=1.8.1,<2.0.0"
 openpyxl = "*"
 parse = "*"
 prefixcommons = ">=0.1.7"
@@ -2282,13 +2434,13 @@ linkml-runtime = ">=1.3.4"
 
 [[package]]
 name = "linkml-renderer"
-version = "0.3.0"
+version = "0.3.1"
 description = "linkml-renderer"
 optional = false
-python-versions = ">=3.8,<4.0"
+python-versions = "<4.0,>=3.8"
 files = [
-    {file = "linkml_renderer-0.3.0-py3-none-any.whl", hash = "sha256:9b2c0207751c8b5abb814b67fa1ae0f2a4dce80637d56ed770f74a40d4fee614"},
-    {file = "linkml_renderer-0.3.0.tar.gz", hash = "sha256:59441022182d1386ef761ad4d055a23cef5707e0070400e2f6860893751c05f8"},
+    {file = "linkml_renderer-0.3.1-py3-none-any.whl", hash = "sha256:3737247ecc349c270b849c55593719fb457b385223ef8f75e7e7b0da11eb12e3"},
+    {file = "linkml_renderer-0.3.1.tar.gz", hash = "sha256:f600ca96d603e53b7187abe1dc9c417334bd96756d3e4f704a96892f6b28ba5a"},
 ]
 
 [package.dependencies]
@@ -2299,13 +2451,13 @@ pydantic = "*"
 
 [[package]]
 name = "linkml-runtime"
-version = "1.7.5"
+version = "1.8.2"
 description = "Runtime environment for LinkML, the Linked open data modeling language"
 optional = false
 python-versions = "<4.0,>=3.8"
 files = [
-    {file = "linkml_runtime-1.7.5-py3-none-any.whl", hash = "sha256:c58000c7c68fa97b7d76c50421a85a64e25f07eec5bcac464bc00c4cd79007a6"},
-    {file = "linkml_runtime-1.7.5.tar.gz", hash = "sha256:b31197a5398359441ae1ed43470c54377a1d08db961366dda670300dddcd71d7"},
+    {file = "linkml_runtime-1.8.2-py3-none-any.whl", hash = "sha256:a66d7b5b82cb57b2d6c603c75ca22db4bae0409e0fb2b9e7835f921a23716096"},
+    {file = "linkml_runtime-1.8.2.tar.gz", hash = "sha256:f5067aeeb96c8d3ca1761b55b82d927af88d810459d533fb1f7876a90224b130"},
 ]
 
 [package.dependencies]
@@ -2324,195 +2476,178 @@ rdflib = ">=6.0.0"
 requests = "*"
 
 [[package]]
-name = "llm"
-version = "0.13.1"
-description = "A CLI utility and Python library for interacting with Large Language Models, including OpenAI, PaLM and local models installed on your own machine."
+name = "litellm"
+version = "1.44.15"
+description = "Library to easily interface with LLM API providers"
 optional = false
-python-versions = ">=3.8"
+python-versions = "!=2.7.*,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,!=3.7.*,>=3.8"
 files = [
-    {file = "llm-0.13.1-py3-none-any.whl", hash = "sha256:05e468e3723097a07dba9d2b87d05f2359e7e436e8b8bd6743074021f4d8169c"},
-    {file = "llm-0.13.1.tar.gz", hash = "sha256:fadda395c273cfd199886f41b6380eb37106284754cb21601233217ae764d4f7"},
+    {file = "litellm-1.44.15-py3-none-any.whl", hash = "sha256:6b818bb9b974e72dd731fedb0ef0c2164bc3239fc879428b054f4192ad32115a"},
+    {file = "litellm-1.44.15.tar.gz", hash = "sha256:7bd3a9bde01f7a80f1bbf748ccd171debcea435ba4ac0853688049f66673a44e"},
 ]
 
 [package.dependencies]
+aiohttp = "*"
 click = "*"
-click-default-group = ">=1.2.3"
-openai = ">=1.0"
-pip = "*"
-pluggy = "*"
-pydantic = ">=1.10.2"
-pyreadline3 = {version = "*", markers = "sys_platform == \"win32\""}
-python-ulid = "*"
-PyYAML = "*"
-setuptools = "*"
-sqlite-migrate = ">=0.1a2"
-sqlite-utils = ">=3.35.0"
+importlib-metadata = ">=6.8.0"
+jinja2 = ">=3.1.2,<4.0.0"
+jsonschema = ">=4.22.0,<5.0.0"
+openai = ">=1.40.0"
+pydantic = ">=2.0.0,<3.0.0"
+python-dotenv = ">=0.2.0"
+requests = ">=2.31.0,<3.0.0"
+tiktoken = ">=0.7.0"
+tokenizers = "*"
 
 [package.extras]
-test = ["black (>=24.1.0)", "cogapp", "mypy", "numpy", "pytest", "pytest-httpx", "ruff", "types-PyYAML", "types-click", "types-setuptools"]
+extra-proxy = ["azure-identity (>=1.15.0,<2.0.0)", "azure-keyvault-secrets (>=4.8.0,<5.0.0)", "google-cloud-kms (>=2.21.3,<3.0.0)", "prisma (==0.11.0)", "resend (>=0.8.0,<0.9.0)"]
+proxy = ["PyJWT (>=2.8.0,<3.0.0)", "apscheduler (>=3.10.4,<4.0.0)", "backoff", "cryptography (>=42.0.5,<43.0.0)", "fastapi (>=0.111.0,<0.112.0)", "fastapi-sso (>=0.10.0,<0.11.0)", "gunicorn (>=22.0.0,<23.0.0)", "orjson (>=3.9.7,<4.0.0)", "pynacl (>=1.5.0,<2.0.0)", "python-multipart (>=0.0.9,<0.0.10)", "pyyaml (>=6.0.1,<7.0.0)", "rq", "uvicorn (>=0.22.0,<0.23.0)"]
 
 [[package]]
 name = "lxml"
-version = "5.2.1"
+version = "5.3.0"
 description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API."
 optional = false
 python-versions = ">=3.6"
 files = [
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 ]
 
 [package.dependencies]
@@ -2657,12 +2780,15 @@ contourpy = ">=1.0.1"
 cycler = ">=0.10"
 fonttools = ">=4.22.0"
 kiwisolver = ">=1.3.1"
-numpy = ">=1.21"
+numpy = ">=1.23"
 packaging = ">=20.0"
 pillow = ">=8"
 pyparsing = ">=2.3.1"
 python-dateutil = ">=2.7"
 
+[package.extras]
+dev = ["meson-python (>=0.13.1)", "numpy (>=1.25)", "pybind11 (>=2.6)", "setuptools (>=64)", "setuptools_scm (>=7)"]
+
 [[package]]
 name = "mccabe"
 version = "0.7.0"
@@ -2674,17 +2800,6 @@ files = [
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-[[package]]
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-description = "Markdown URL utilities"
-optional = false
-python-versions = ">=3.7"
-files = [
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-
 [[package]]
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 version = "0.1.2"
@@ -2704,13 +2819,13 @@ tests = ["coverage", "pytest"]
 
 [[package]]
 name = "more-itertools"
-version = "10.2.0"
+version = "10.4.0"
 description = "More routines for operating on iterables, beyond itertools"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [[package]]
@@ -2825,13 +2940,13 @@ files = [
 
 [[package]]
 name = "ndex2"
-version = "3.8.0"
+version = "3.9.0"
 description = "Nice CX Python includes a client and a data model."
 optional = false
 python-versions = "*"
 files = [
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@@ -2862,29 +2977,15 @@ doc = ["myst-nb (>=1.0)", "numpydoc (>=1.7)", "pillow (>=9.4)", "pydata-sphinx-t
 extra = ["lxml (>=4.6)", "pydot (>=2.0)", "pygraphviz (>=1.12)", "sympy (>=1.10)"]
 test = ["pytest (>=7.2)", "pytest-cov (>=4.0)"]
 
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-description = "Python client for the NLP Cloud API"
-optional = false
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-
-[package.dependencies]
-requests = "*"
-
 [[package]]
 name = "nltk"
-version = "3.8.1"
+version = "3.9.1"
 description = "Natural Language Toolkit"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -2903,58 +3004,75 @@ twitter = ["twython"]
 
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+    {file = "numpy-2.1.1.tar.gz", hash = "sha256:d0cf7d55b1051387807405b3898efafa862997b4cba8aa5dbe657be794afeafd"},
 ]
 
 [[package]]
 name = "oaklib"
-version = "0.6.5"
+version = "0.6.16"
 description = "Ontology Access Kit: Python library for common ontology operations over a variety of backends"
 optional = false
 python-versions = "<4.0.0,>=3.9"
 files = [
-    {file = "oaklib-0.6.5-py3-none-any.whl", hash = "sha256:9f5d66193133e639ddef4ed1819accf9f96560c86017030a4cf1f2eba6de2396"},
-    {file = "oaklib-0.6.5.tar.gz", hash = "sha256:ba3036772dc9a95ecf1272e32e7e99f4954a1d7fd1fd0a94ccfca656c0ea32ca"},
+    {file = "oaklib-0.6.16-py3-none-any.whl", hash = "sha256:173943c2123ea1a53aa158d053b6f48b3fd609c8ff90de80cc94e58f3178288b"},
+    {file = "oaklib-0.6.16.tar.gz", hash = "sha256:7c95ae53ff1c844e79a61c37b37c4a6328a1759e55702a58d779fb934a678db1"},
 ]
 
 [package.dependencies]
@@ -2963,15 +3081,15 @@ appdirs = ">=1.4.4"
 class-resolver = ">=0.4.2"
 click = "*"
 curies = ">=0.6.6"
-defusedxml = ">=0.7.1,<0.8.0"
+defusedxml = ">=0.7.1"
 eutils = ">=0.6.0"
 funowl = ">=0.2.0"
-jsonlines = ">=4.0.0,<5.0.0"
+jsonlines = "*"
 kgcl-rdflib = "0.5.0"
-kgcl-schema = ">=0.6.8,<0.7.0"
+kgcl-schema = ">=0.6.9,<0.7.0"
 linkml-renderer = ">=0.3.0"
 linkml-runtime = ">=1.5.3"
-ndex2 = ">=3.5.0,<4.0.0"
+ndex2 = ">=3.5.0"
 networkx = ">=2.7.1"
 ols-client = ">=0.1.1"
 ontoportal-client = ">=0.0.3"
@@ -2986,12 +3104,12 @@ semsql = ">=0.3.1"
 SPARQLWrapper = "*"
 SQLAlchemy = ">=1.4.32"
 sssom = ">=0.4.4,<0.5.0"
-tenacity = ">=8.2.3,<9.0.0"
+tenacity = ">=8.2.3"
 
 [package.extras]
 gilda = ["gilda (>=1.0.0)", "urllib3 (<2)"]
-llm = ["aiohttp", "html2text", "llm"]
-semsimian = ["semsimian (>=0.2.15)"]
+llm = ["aiohttp", "html2text", "llm (>=0.14,<0.15)"]
+semsimian = ["semsimian (>=0.2.18)"]
 
 [[package]]
 name = "ols-client"
@@ -3017,7 +3135,7 @@ tests = ["coverage", "pytest"]
 
 [[package]]
 name = "ontogpt"
-version = "0.3.11"
+version = "1.0.3"
 description = "OntoGPT"
 optional = false
 python-versions = ">=3.9,<3.9.7 || >3.9.7,<4.0"
@@ -3027,27 +3145,25 @@ develop = false
 [package.dependencies]
 aiohttp = ">=3.8.4"
 beautifulsoup4 = ">=4.11.1"
-bioc = ">=2.0.post5"
+bioc = ">=2.0"
 cachier = ">=2.1.0"
 click = ">=8.1.3"
+diskcache = "^5.6.3"
 dpath = "^2.1.6"
 frontend = "^0.0.3"
 gilda = ">=1.0.0"
-gpt4 = ">=0.0.1"
 inflect = ">=6.0.2"
 inflection = ">=0.5.1"
-linkml = "^1.5.7"
+linkml = "^1.8.0"
 linkml-owl = "^0.3.0"
-llm = ">=0.8"
-nlpcloud = ">=1.0.39"
+litellm = "^1.37.14"
 oaklib = ">=0.5.28"
-openai = "^1.10.0"
 pydantic = ">=2.4.0"
+pymupdf = "^1.24.9"
 requests = "^2.31.0"
 requests-cache = ">=1.2.0"
 "ruamel.yaml" = ">=0.17.31"
-streamlit = ">=1.22.0"
-tiktoken = ">=0.5.0"
+tiktoken = "^0.7.0"
 toml = "^0.10.2"
 urllib3 = "<2"
 wikipedia = ">=1.4.0"
@@ -3055,17 +3171,14 @@ wikipedia-api = ">=0.5.8"
 
 [package.extras]
 docs = ["myst-parser[docs] (>=0.18.1)", "sphinx-autodoc-typehints[docs] (>=1.19.4)", "sphinx-click[docs] (>=4.3.0)", "sphinx-rtd-theme[docs] (>=1.0.0)", "sphinx[docs] (>=5.3.0)"]
-gpt4all = ["llm-gpt4all[gpt4all] (>=0.2)"]
-huggingface = ["huggingface_hub[huggingface] (>=0.15.1)"]
 recipes = ["recipe-scrapers[recipes] (>=14.35.0)"]
-textract = ["textract[textract]"]
 web = ["Jinja2 (>=3.1.2)", "fastapi (>=0.88.0)", "uvicorn (>=0.20.0)"]
 
 [package.source]
 type = "git"
 url = "https://github.com/monarch-initiative/ontogpt.git"
-reference = "main"
-resolved_reference = "3f755df0398afc44c60a301b3a3d903438d7cccf"
+reference = "v1.0.3"
+resolved_reference = "53b64ae68b8aabffc4e0d6987c688b3e09d10cd0"
 
 [[package]]
 name = "ontoportal-client"
@@ -3088,36 +3201,37 @@ tests = ["coverage", "pytest", "unittest-templates"]
 
 [[package]]
 name = "openai"
-version = "1.27.0"
+version = "1.43.0"
 description = "The official Python library for the openai API"
 optional = false
 python-versions = ">=3.7.1"
 files = [
-    {file = "openai-1.27.0-py3-none-any.whl", hash = "sha256:1183346fae6e63cb3a9134e397c0067690dc9d94ceb36eb0eb2c1bb9a1542aca"},
-    {file = "openai-1.27.0.tar.gz", hash = "sha256:498adc80ba81a95324afdfd11a71fa43a37e1d94a5ca5f4542e52fe9568d995b"},
+    {file = "openai-1.43.0-py3-none-any.whl", hash = "sha256:1a748c2728edd3a738a72a0212ba866f4fdbe39c9ae03813508b267d45104abe"},
+    {file = "openai-1.43.0.tar.gz", hash = "sha256:e607aff9fc3e28eade107e5edd8ca95a910a4b12589336d3cbb6bfe2ac306b3c"},
 ]
 
 [package.dependencies]
 anyio = ">=3.5.0,<5"
 distro = ">=1.7.0,<2"
 httpx = ">=0.23.0,<1"
+jiter = ">=0.4.0,<1"
 pydantic = ">=1.9.0,<3"
 sniffio = "*"
 tqdm = ">4"
-typing-extensions = ">=4.7,<5"
+typing-extensions = ">=4.11,<5"
 
 [package.extras]
 datalib = ["numpy (>=1)", "pandas (>=1.2.3)", "pandas-stubs (>=1.1.0.11)"]
 
 [[package]]
 name = "openpyxl"
-version = "3.1.2"
+version = "3.1.5"
 description = "A Python library to read/write Excel 2010 xlsx/xlsm files"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
 files = [
-    {file = "openpyxl-3.1.2-py2.py3-none-any.whl", hash = "sha256:f91456ead12ab3c6c2e9491cf33ba6d08357d802192379bb482f1033ade496f5"},
-    {file = "openpyxl-3.1.2.tar.gz", hash = "sha256:a6f5977418eff3b2d5500d54d9db50c8277a368436f4e4f8ddb1be3422870184"},
+    {file = "openpyxl-3.1.5-py2.py3-none-any.whl", hash = "sha256:5282c12b107bffeef825f4617dc029afaf41d0ea60823bbb665ef3079dc79de2"},
+    {file = "openpyxl-3.1.5.tar.gz", hash = "sha256:cf0e3cf56142039133628b5acffe8ef0c12bc902d2aadd3e0fe5878dc08d1050"},
 ]
 
 [package.dependencies]
@@ -3125,13 +3239,13 @@ et-xmlfile = "*"
 
 [[package]]
 name = "packaging"
-version = "24.0"
+version = "24.1"
 description = "Core utilities for Python packages"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "packaging-24.0-py3-none-any.whl", hash = "sha256:2ddfb553fdf02fb784c234c7ba6ccc288296ceabec964ad2eae3777778130bc5"},
-    {file = "packaging-24.0.tar.gz", hash = "sha256:eb82c5e3e56209074766e6885bb04b8c38a0c015d0a30036ebe7ece34c9989e9"},
+    {file = "packaging-24.1-py3-none-any.whl", hash = "sha256:5b8f2217dbdbd2f7f384c41c628544e6d52f2d0f53c6d0c3ea61aa5d1d7ff124"},
+    {file = "packaging-24.1.tar.gz", hash = "sha256:026ed72c8ed3fcce5bf8950572258698927fd1dbda10a5e981cdf0ac37f4f002"},
 ]
 
 [[package]]
@@ -3142,6 +3256,7 @@ optional = false
 python-versions = ">=3.9"
 files = [
     {file = "pandas-2.2.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:90c6fca2acf139569e74e8781709dccb6fe25940488755716d1d354d6bc58bce"},
+    {file = "pandas-2.2.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:c7adfc142dac335d8c1e0dcbd37eb8617eac386596eb9e1a1b77791cf2498238"},
     {file = "pandas-2.2.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:4abfe0be0d7221be4f12552995e58723c7422c80a659da13ca382697de830c08"},
     {file = "pandas-2.2.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:8635c16bf3d99040fdf3ca3db669a7250ddf49c55dc4aa8fe0ae0fa8d6dcc1f0"},
     {file = "pandas-2.2.2-cp310-cp310-musllinux_1_1_aarch64.whl", hash = "sha256:40ae1dffb3967a52203105a077415a86044a2bea011b5f321c6aa64b379a3f51"},
@@ -3162,6 +3277,7 @@ files = [
     {file = "pandas-2.2.2-cp312-cp312-musllinux_1_1_x86_64.whl", hash = "sha256:43498c0bdb43d55cb162cdc8c06fac328ccb5d2eabe3cadeb3529ae6f0517c32"},
     {file = "pandas-2.2.2-cp312-cp312-win_amd64.whl", hash = "sha256:d187d355ecec3629624fccb01d104da7d7f391db0311145817525281e2804d23"},
     {file = "pandas-2.2.2-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:0ca6377b8fca51815f382bd0b697a0814c8bda55115678cbc94c30aacbb6eff2"},
+    {file = "pandas-2.2.2-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:9057e6aa78a584bc93a13f0a9bf7e753a5e9770a30b4d758b8d5f2a62a9433cd"},
     {file = "pandas-2.2.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:001910ad31abc7bf06f49dcc903755d2f7f3a9186c0c040b827e522e9cef0863"},
     {file = "pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:66b479b0bd07204e37583c191535505410daa8df638fd8e75ae1b383851fe921"},
     {file = "pandas-2.2.2-cp39-cp39-musllinux_1_1_aarch64.whl", hash = "sha256:a77e9d1c386196879aa5eb712e77461aaee433e54c68cf253053a73b7e49c33a"},
@@ -3172,9 +3288,9 @@ files = [
 
 [package.dependencies]
 numpy = [
+    {version = ">=1.26.0", markers = "python_version >= \"3.12\""},
     {version = ">=1.22.4", markers = "python_version < \"3.11\""},
     {version = ">=1.23.2", markers = "python_version == \"3.11\""},
-    {version = ">=1.26.0", markers = "python_version >= \"3.12\""},
 ]
 python-dateutil = ">=2.8.2"
 pytz = ">=2020.1"
@@ -3223,38 +3339,41 @@ sqlalchemy = "*"
 
 [[package]]
 name = "parse"
-version = "1.20.1"
+version = "1.20.2"
 description = "parse() is the opposite of format()"
 optional = false
 python-versions = "*"
 files = [
-    {file = "parse-1.20.1-py2.py3-none-any.whl", hash = "sha256:76ddd5214255ae711db4c512be636151fbabaa948c6f30115aecc440422ca82c"},
-    {file = "parse-1.20.1.tar.gz", hash = "sha256:09002ca350ad42e76629995f71f7b518670bcf93548bdde3684fd55d2be51975"},
+    {file = "parse-1.20.2-py2.py3-none-any.whl", hash = "sha256:967095588cb802add9177d0c0b6133b5ba33b1ea9007ca800e526f42a85af558"},
+    {file = "parse-1.20.2.tar.gz", hash = "sha256:b41d604d16503c79d81af5165155c0b20f6c8d6c559efa66b4b695c3e5a0a0ce"},
 ]
 
 [[package]]
 name = "phenopackets"
-version = "2.0.2.post1"
-description = "A python implementation of phenopackets protobuf"
+version = "2.0.2.post4"
+description = "Phenopacket Schema"
 optional = false
-python-versions = "*"
+python-versions = ">=3.8"
 files = [
-    {file = "phenopackets-2.0.2.post1-py3-none-any.whl", hash = "sha256:4b18beaa8f27dfad81e4547415b1249e1d840737858f6092801ab54dd3ba0845"},
-    {file = "phenopackets-2.0.2.post1.tar.gz", hash = "sha256:242fce220529092685a059144b40bea9dd044f375a593c5cfdbcf1e1e658bd8b"},
+    {file = "phenopackets-2.0.2.post4-py3-none-any.whl", hash = "sha256:6f3935d1875fb97e44584ffa4374d2078497f95c7331dc4a04ca6945ab110e45"},
+    {file = "phenopackets-2.0.2.post4.tar.gz", hash = "sha256:a262a28dbf9851d2ad2e98bea1ccac4d00bebb9613f868020d2cb5f8a06adb9e"},
 ]
 
 [package.dependencies]
-protobuf = ">=3.20.2,<4.0"
+protobuf = ">=3.20.2,<4.0.0"
+
+[package.extras]
+test = ["pytest (>=7.0.0,<8.0.0)"]
 
 [[package]]
 name = "pheval"
-version = "0.3.5"
+version = "0.3.9"
 description = ""
 optional = false
 python-versions = "<4.0.0,>=3.9"
 files = [
-    {file = "pheval-0.3.5-py3-none-any.whl", hash = "sha256:3aec34ce283d89ac89d14087e1377d24aa44b8454ef81450c8c479aa45f5248f"},
-    {file = "pheval-0.3.5.tar.gz", hash = "sha256:dafab6bd51267f39f8eba974e657184e231437ea93fbeb883e8a4e70d9dda342"},
+    {file = "pheval-0.3.9-py3-none-any.whl", hash = "sha256:f14bc7d345b67ce948b99ac3f8c27218038a7c6dd9a70aad502934c2f7b0dfb7"},
+    {file = "pheval-0.3.9.tar.gz", hash = "sha256:ecd4473efe26ec9a10101cff2fbbd63aa358f78a35977a6a5dc7956f6a125f0b"},
 ]
 
 [package.dependencies]
@@ -3277,110 +3396,110 @@ tqdm = ">=4.64.1"
 
 [[package]]
 name = "pillow"
-version = "10.3.0"
+version = "10.4.0"
 description = "Python Imaging Library (Fork)"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "pillow-10.3.0-cp310-cp310-macosx_10_10_x86_64.whl", hash = "sha256:90b9e29824800e90c84e4022dd5cc16eb2d9605ee13f05d47641eb183cd73d45"},
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-docs = ["furo", "olefile", "sphinx (>=2.4)", "sphinx-copybutton", "sphinx-inline-tabs", "sphinx-removed-in", "sphinxext-opengraph"]
+docs = ["furo", "olefile", "sphinx (>=7.3)", "sphinx-copybutton", "sphinx-inline-tabs", "sphinxext-opengraph"]
 fpx = ["olefile"]
 mic = ["olefile"]
 tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "packaging", "pyroma", "pytest", "pytest-cov", "pytest-timeout"]
 typing = ["typing-extensions"]
 xmp = ["defusedxml"]
 
-[[package]]
-name = "pip"
-version = "24.0"
-description = "The PyPA recommended tool for installing Python packages."
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-python-versions = ">=3.7"
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-]
-
 [[package]]
 name = "platformdirs"
-version = "4.2.1"
+version = "4.2.2"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.extras]
@@ -3390,13 +3509,13 @@ type = ["mypy (>=1.8)"]
 
 [[package]]
 name = "plotly"
-version = "5.22.0"
+version = "5.24.0"
 description = "An open-source, interactive data visualization library for Python"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -3467,13 +3586,13 @@ xlsxwriter = ["xlsxwriter"]
 
 [[package]]
 name = "portalocker"
-version = "2.8.2"
+version = "2.10.1"
 description = "Wraps the portalocker recipe for easy usage"
 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.dependencies]
@@ -3503,13 +3622,13 @@ requests = ">=2.28.1,<3.0.0"
 
 [[package]]
 name = "prefixmaps"
-version = "0.2.4"
+version = "0.2.5"
 description = "A python library for retrieving semantic prefix maps"
 optional = false
 python-versions = "<4.0,>=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -3578,208 +3697,140 @@ files = [
 [package.dependencies]
 PyYAML = "*"
 
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 ]
 
 [package.dependencies]
 typing-extensions = ">=4.6.0,<4.7.0 || >4.7.0"
 
-[[package]]
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-description = "Widget for deck.gl maps"
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-[package.dependencies]
-jinja2 = ">=2.10.1"
-numpy = ">=1.16.4"
-
-[package.extras]
-carto = ["pydeck-carto"]
-jupyter = ["ipykernel (>=5.1.2)", "ipython (>=5.8.0)", "ipywidgets (>=7,<8)", "traitlets (>=4.3.2)"]
-
-[[package]]
-name = "pygments"
-version = "2.18.0"
-description = "Pygments is a syntax highlighting package written in Python."
-optional = false
-python-versions = ">=3.8"
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-[package.extras]
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-
 [[package]]
 name = "pyjsg"
 version = "0.11.10"
@@ -3810,8 +3861,8 @@ files = [
 astroid = ">=2.15.8,<=2.17.0-dev0"
 colorama = {version = ">=0.4.5", markers = "sys_platform == \"win32\""}
 dill = [
-    {version = ">=0.2", markers = "python_version < \"3.11\""},
     {version = ">=0.3.6", markers = "python_version >= \"3.11\""},
+    {version = ">=0.2", markers = "python_version < \"3.11\""},
 ]
 isort = ">=4.2.5,<6"
 mccabe = ">=0.6,<0.8"
@@ -3823,15 +3874,80 @@ tomlkit = ">=0.10.1"
 spelling = ["pyenchant (>=3.2,<4.0)"]
 testutils = ["gitpython (>3)"]
 
+[[package]]
+name = "pymupdf"
+version = "1.24.10"
+description = "A high performance Python library for data extraction, analysis, conversion & manipulation of PDF (and other) documents."
+optional = false
+python-versions = ">=3.8"
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+
+[package.dependencies]
+PyMuPDFb = "1.24.10"
+
+[[package]]
+name = "pymupdfb"
+version = "1.24.10"
+description = "MuPDF shared libraries for PyMuPDF."
+optional = false
+python-versions = ">=3.8"
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+]
+
 [[package]]
 name = "pyparsing"
-version = "3.1.2"
+version = "3.1.4"
 description = "pyparsing module - Classes and methods to define and execute parsing grammars"
 optional = false
 python-versions = ">=3.6.8"
 files = [
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 ]
 
 [package.extras]
@@ -3839,33 +3955,22 @@ diagrams = ["jinja2", "railroad-diagrams"]
 
 [[package]]
 name = "pyproject-api"
-version = "1.6.1"
+version = "1.7.1"
 description = "API to interact with the python pyproject.toml based projects"
 optional = false
 python-versions = ">=3.8"
 files = [
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+    {file = "pyproject_api-1.7.1.tar.gz", hash = "sha256:7ebc6cd10710f89f4cf2a2731710a98abce37ebff19427116ff2174c9236a827"},
 ]
 
 [package.dependencies]
-packaging = ">=23.1"
+packaging = ">=24.1"
 tomli = {version = ">=2.0.1", markers = "python_version < \"3.11\""}
 
 [package.extras]
-docs = ["furo (>=2023.8.19)", "sphinx (<7.2)", "sphinx-autodoc-typehints (>=1.24)"]
-testing = ["covdefaults (>=2.3)", "pytest (>=7.4)", "pytest-cov (>=4.1)", "pytest-mock (>=3.11.1)", "setuptools (>=68.1.2)", "wheel (>=0.41.2)"]
-
-[[package]]
-name = "pyreadline3"
-version = "3.4.1"
-description = "A python implementation of GNU readline."
-optional = false
-python-versions = "*"
-files = [
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-]
+docs = ["furo (>=2024.5.6)", "sphinx-autodoc-typehints (>=2.2.1)"]
+testing = ["covdefaults (>=2.3)", "pytest (>=8.2.2)", "pytest-cov (>=5)", "pytest-mock (>=3.14)", "setuptools (>=70.1)"]
 
 [[package]]
 name = "pyserde"
@@ -4022,18 +4127,18 @@ files = [
 six = ">=1.5"
 
 [[package]]
-name = "python-ulid"
-version = "2.5.0"
-description = "Universally unique lexicographically sortable identifier"
+name = "python-dotenv"
+version = "1.0.1"
+description = "Read key-value pairs from a .env file and set them as environment variables"
 optional = false
-python-versions = ">=3.9"
+python-versions = ">=3.8"
 files = [
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 [package.extras]
-pydantic = ["pydantic (>=2.0)"]
+cli = ["click (>=5.0)"]
 
 [[package]]
 name = "pytrie"
@@ -4042,6 +4147,7 @@ description = "A pure Python implementation of the trie data structure."
 optional = false
 python-versions = "*"
 files = [
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 ]
 
 [[package]]
@@ -4208,101 +4327,101 @@ rpds-py = ">=0.7.0"
 
 [[package]]
 name = "regex"
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+version = "2024.7.24"
 description = "Alternative regular expression module, to replace re."
 optional = false
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 name = "requests"
-version = "2.31.0"
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 description = "Python HTTP for Humans."
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
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 [[package]]
 name = "requests-cache"
-version = "1.2.0"
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 ]
 
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-optional = false
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-
-[package.extras]
-jupyter = ["ipywidgets (>=7.5.1,<9)"]
-
 [[package]]
 name = "rpds-py"
-version = "0.18.1"
+version = "0.20.0"
 description = "Python bindings to Rust's persistent data structures (rpds)"
 optional = false
 python-versions = ">=3.8"
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@@ -4848,64 +4967,64 @@ pandas = ["pandas (>=1.3.5)"]
 
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 [package.dependencies]
@@ -5203,6 +5216,123 @@ requests = ">=2.26.0"
 [package.extras]
 blobfile = ["blobfile (>=2)"]
 
+[[package]]
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+]
+
+[package.dependencies]
+huggingface-hub = ">=0.16.4,<1.0"
+
+[package.extras]
+dev = ["tokenizers[testing]"]
+docs = ["setuptools-rust", "sphinx", "sphinx-rtd-theme"]
+testing = ["black (==22.3)", "datasets", "numpy", "pytest", "requests", "ruff"]
+
 [[package]]
 name = "toml"
 version = "0.10.2"
@@ -5227,82 +5357,51 @@ files = [
 
 [[package]]
 name = "tomlkit"
-version = "0.12.5"
+version = "0.13.2"
 description = "Style preserving TOML library"
 optional = false
-python-versions = ">=3.7"
-files = [
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-
-[[package]]
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-optional = false
-python-versions = ">=3.7"
-files = [
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-
-[[package]]
-name = "tornado"
-version = "6.4"
-description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed."
-optional = false
-python-versions = ">= 3.8"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [[package]]
 name = "tox"
-version = "4.15.0"
+version = "4.18.0"
 description = "tox is a generic virtualenv management and test command line tool"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "tox-4.15.0-py3-none-any.whl", hash = "sha256:300055f335d855b2ab1b12c5802de7f62a36d4fd53f30bd2835f6a201dda46ea"},
-    {file = "tox-4.15.0.tar.gz", hash = "sha256:7a0beeef166fbe566f54f795b4906c31b428eddafc0102ac00d20998dd1933f6"},
+    {file = "tox-4.18.0-py3-none-any.whl", hash = "sha256:0a457400cf70615dc0627eb70d293e80cd95d8ce174bb40ac011011f0c03a249"},
+    {file = "tox-4.18.0.tar.gz", hash = "sha256:5dfa1cab9f146becd6e351333a82f9e0ade374451630ba65ee54584624c27b58"},
 ]
 
 [package.dependencies]
-cachetools = ">=5.3.2"
+cachetools = ">=5.4"
 chardet = ">=5.2"
 colorama = ">=0.4.6"
-filelock = ">=3.13.1"
-packaging = ">=23.2"
-platformdirs = ">=4.1"
-pluggy = ">=1.3"
-pyproject-api = ">=1.6.1"
+filelock = ">=3.15.4"
+packaging = ">=24.1"
+platformdirs = ">=4.2.2"
+pluggy = ">=1.5"
+pyproject-api = ">=1.7.1"
 tomli = {version = ">=2.0.1", markers = "python_version < \"3.11\""}
-virtualenv = ">=20.25"
+virtualenv = ">=20.26.3"
 
 [package.extras]
-docs = ["furo (>=2023.9.10)", "sphinx (>=7.2.6)", "sphinx-argparse-cli (>=1.11.1)", "sphinx-autodoc-typehints (>=1.25.2)", "sphinx-copybutton (>=0.5.2)", "sphinx-inline-tabs (>=2023.4.21)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.11)"]
-testing = ["build[virtualenv] (>=1.0.3)", "covdefaults (>=2.3)", "detect-test-pollution (>=1.2)", "devpi-process (>=1)", "diff-cover (>=8.0.2)", "distlib (>=0.3.8)", "flaky (>=3.7)", "hatch-vcs (>=0.4)", "hatchling (>=1.21)", "psutil (>=5.9.7)", "pytest (>=7.4.4)", "pytest-cov (>=4.1)", "pytest-mock (>=3.12)", "pytest-xdist (>=3.5)", "re-assert (>=1.1)", "time-machine (>=2.13)", "wheel (>=0.42)"]
+docs = ["furo (>=2024.7.18)", "sphinx (>=7.4.7)", "sphinx-argparse-cli (>=1.16)", "sphinx-autodoc-typehints (>=2.2.3)", "sphinx-copybutton (>=0.5.2)", "sphinx-inline-tabs (>=2023.4.21)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.11)"]
+testing = ["build[virtualenv] (>=1.2.1)", "covdefaults (>=2.3)", "detect-test-pollution (>=1.2)", "devpi-process (>=1)", "diff-cover (>=9.1.1)", "distlib (>=0.3.8)", "flaky (>=3.8.1)", "hatch-vcs (>=0.4)", "hatchling (>=1.25)", "psutil (>=6)", "pytest (>=8.3.2)", "pytest-cov (>=5)", "pytest-mock (>=3.14)", "pytest-xdist (>=3.6.1)", "re-assert (>=1.1)", "setuptools (>=70.3)", "time-machine (>=2.14.2)", "wheel (>=0.43)"]
 
 [[package]]
 name = "tqdm"
-version = "4.66.4"
+version = "4.66.5"
 description = "Fast, Extensible Progress Meter"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "tqdm-4.66.4-py3-none-any.whl", hash = "sha256:b75ca56b413b030bc3f00af51fd2c1a1a5eac6a0c1cca83cbb37a5c52abce644"},
-    {file = "tqdm-4.66.4.tar.gz", hash = "sha256:e4d936c9de8727928f3be6079590e97d9abfe8d39a590be678eb5919ffc186bb"},
+    {file = "tqdm-4.66.5-py3-none-any.whl", hash = "sha256:90279a3770753eafc9194a0364852159802111925aa30eb3f9d85b0e805ac7cd"},
+    {file = "tqdm-4.66.5.tar.gz", hash = "sha256:e1020aef2e5096702d8a025ac7d16b1577279c9d63f8375b63083e9a5f0fcbad"},
 ]
 
 [package.dependencies]
@@ -5316,42 +5415,42 @@ telegram = ["requests"]
 
 [[package]]
 name = "typeguard"
-version = "4.2.1"
+version = "4.3.0"
 description = "Run-time type checker for Python"
 optional = false
 python-versions = ">=3.8"
 files = [
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-    {file = "typeguard-4.2.1.tar.gz", hash = "sha256:c556a1b95948230510070ca53fa0341fb0964611bd05d598d87fb52115d65fee"},
+    {file = "typeguard-4.3.0-py3-none-any.whl", hash = "sha256:4d24c5b39a117f8a895b9da7a9b3114f04eb63bade45a4492de49b175b6f7dfa"},
+    {file = "typeguard-4.3.0.tar.gz", hash = "sha256:92ee6a0aec9135181eae6067ebd617fd9de8d75d714fb548728a4933b1dea651"},
 ]
 
 [package.dependencies]
-typing-extensions = {version = ">=4.10.0", markers = "python_version < \"3.13\""}
+typing-extensions = ">=4.10.0"
 
 [package.extras]
-doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)"]
+doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme (>=1.3.0)"]
 test = ["coverage[toml] (>=7)", "mypy (>=1.2.0)", "pytest (>=7)"]
 
 [[package]]
 name = "types-python-dateutil"
-version = "2.9.0.20240316"
+version = "2.9.0.20240821"
 description = "Typing stubs for python-dateutil"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "types-python-dateutil-2.9.0.20240316.tar.gz", hash = "sha256:5d2f2e240b86905e40944dd787db6da9263f0deabef1076ddaed797351ec0202"},
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+    {file = "types-python-dateutil-2.9.0.20240821.tar.gz", hash = "sha256:9649d1dcb6fef1046fb18bebe9ea2aa0028b160918518c34589a46045f6ebd98"},
+    {file = "types_python_dateutil-2.9.0.20240821-py3-none-any.whl", hash = "sha256:f5889fcb4e63ed4aaa379b44f93c32593d50b9a94c9a60a0c854d8cc3511cd57"},
 ]
 
 [[package]]
 name = "typing-extensions"
-version = "4.11.0"
+version = "4.12.2"
 description = "Backported and Experimental Type Hints for Python 3.8+"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "typing_extensions-4.11.0-py3-none-any.whl", hash = "sha256:c1f94d72897edaf4ce775bb7558d5b79d8126906a14ea5ed1635921406c0387a"},
-    {file = "typing_extensions-4.11.0.tar.gz", hash = "sha256:83f085bd5ca59c80295fc2a82ab5dac679cbe02b9f33f7d83af68e241bea51b0"},
+    {file = "typing_extensions-4.12.2-py3-none-any.whl", hash = "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d"},
+    {file = "typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"},
 ]
 
 [[package]]
@@ -5421,13 +5520,13 @@ six = "*"
 
 [[package]]
 name = "urllib3"
-version = "1.26.18"
+version = "1.26.20"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
 files = [
-    {file = "urllib3-1.26.18-py2.py3-none-any.whl", hash = "sha256:34b97092d7e0a3a8cf7cd10e386f401b3737364026c45e622aa02903dffe0f07"},
-    {file = "urllib3-1.26.18.tar.gz", hash = "sha256:f8ecc1bba5667413457c529ab955bf8c67b45db799d159066261719e328580a0"},
+    {file = "urllib3-1.26.20-py2.py3-none-any.whl", hash = "sha256:0ed14ccfbf1c30a9072c7ca157e4319b70d65f623e91e7b32fadb2853431016e"},
+    {file = "urllib3-1.26.20.tar.gz", hash = "sha256:40c2dc0c681e47eb8f90e7e27bf6ff7df2e677421fd46756da1161c39ca70d32"},
 ]
 
 [package.extras]
@@ -5437,13 +5536,13 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 
 [[package]]
 name = "uvicorn"
-version = "0.29.0"
+version = "0.30.6"
 description = "The lightning-fast ASGI server."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "uvicorn-0.29.0-py3-none-any.whl", hash = "sha256:2c2aac7ff4f4365c206fd773a39bf4ebd1047c238f8b8268ad996829323473de"},
-    {file = "uvicorn-0.29.0.tar.gz", hash = "sha256:6a69214c0b6a087462412670b3ef21224fa48cae0e452b5883e8e8bdfdd11dd0"},
+    {file = "uvicorn-0.30.6-py3-none-any.whl", hash = "sha256:65fd46fe3fda5bdc1b03b94eb634923ff18cd35b2f084813ea79d1f103f711b5"},
+    {file = "uvicorn-0.30.6.tar.gz", hash = "sha256:4b15decdda1e72be08209e860a1e10e92439ad5b97cf44cc945fcbee66fc5788"},
 ]
 
 [package.dependencies]
@@ -5456,24 +5555,27 @@ standard = ["colorama (>=0.4)", "httptools (>=0.5.0)", "python-dotenv (>=0.13)",
 
 [[package]]
 name = "validators"
-version = "0.28.1"
+version = "0.33.0"
 description = "Python Data Validation for Humans™"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "validators-0.28.1-py3-none-any.whl", hash = "sha256:890c98789ad884037f059af6ea915ec2d667129d509180c2c590b8009a4c4219"},
-    {file = "validators-0.28.1.tar.gz", hash = "sha256:5ac88e7916c3405f0ce38ac2ac82a477fcf4d90dbbeddd04c8193171fc17f7dc"},
+    {file = "validators-0.33.0-py3-none-any.whl", hash = "sha256:134b586a98894f8139865953899fc2daeb3d0c35569552c5518f089ae43ed075"},
+    {file = "validators-0.33.0.tar.gz", hash = "sha256:535867e9617f0100e676a1257ba1e206b9bfd847ddc171e4d44811f07ff0bfbf"},
 ]
 
+[package.extras]
+crypto-eth-addresses = ["eth-hash[pycryptodome] (>=0.7.0)"]
+
 [[package]]
 name = "virtualenv"
-version = "20.26.1"
+version = "20.26.3"
 description = "Virtual Python Environment builder"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "virtualenv-20.26.1-py3-none-any.whl", hash = "sha256:7aa9982a728ae5892558bff6a2839c00b9ed145523ece2274fad6f414690ae75"},
-    {file = "virtualenv-20.26.1.tar.gz", hash = "sha256:604bfdceaeece392802e6ae48e69cec49168b9c5f4a44e483963f9242eb0e78b"},
+    {file = "virtualenv-20.26.3-py3-none-any.whl", hash = "sha256:8cc4a31139e796e9a7de2cd5cf2489de1217193116a8fd42328f1bd65f434589"},
+    {file = "virtualenv-20.26.3.tar.gz", hash = "sha256:4c43a2a236279d9ea36a0d76f98d84bd6ca94ac4e0f4a3b9d46d05e10fea542a"},
 ]
 
 [package.dependencies]
@@ -5487,40 +5589,41 @@ test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess
 
 [[package]]
 name = "watchdog"
-version = "4.0.0"
+version = "5.0.1"
 description = "Filesystem events monitoring"
 optional = false
-python-versions = ">=3.8"
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@@ -5528,28 +5631,28 @@ watchmedo = ["PyYAML (>=3.10)"]
 
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