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Standardize prefixes for WBbt and FBbt #17

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caufieldjh opened this issue Sep 16, 2022 · 5 comments
Open
2 tasks

Standardize prefixes for WBbt and FBbt #17

caufieldjh opened this issue Sep 16, 2022 · 5 comments

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@caufieldjh
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See Knowledge-Graph-Hub/kg-phenio#64

Both WBbt and FBbt are included in PHENIO and in KG-Phenio, but may not use the same prefix consistently.
Ensure:

  • All WBbt classes have IRIs that will translate to nodes with WBbt: prefixes
  • All FBbt classes have IRIs that will translate to nodes with FBbt: prefixes
@matentzn
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Should this be an issue in KG phenio?

@caufieldjh
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For the node prefixes, yes, and I'm going to consider that part of Knowledge-Graph-Hub/kg-phenio#64
But they should be consistent here, too. If the changes in #94 do that then this is an instant fix.

@matentzn
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There is not really a "prefix" as such in an RDF export - where do you think the prefix should show up here in this repo?

@caufieldjh
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In the oboInOwl:id or the owl:annotatedSource - though in checking on the phenio.owl from 2024-11-05, this may not be an issue for WBbt anymore. Not sure about FBbt yet

@matentzn
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  • oboInOwl:id ok, thats highly incomplete now. What process needs that tag to generate prefixed Ids? Thats wrong IMO.
  • owl:annotatedSource has a URI value, not a CURIE. Maybe its a compressed URI, in RDF but not tool should be reading RDF in a structural way - all tooling unfolds compressed URIs in RDF to long URI form. Where does this issue show up?

Knowledge-Graph-Hub/kg-phenio#64 is addressed already for a while, so I am not sure yet what remains!

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