Hot fix deprecation fixer

monarch-initiative · Aug 24, 2024 · e18c5d9 · e18c5d9
1 parent 5ef7800
commit e18c5d9
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/src/ontology/mondo.Makefile b/src/ontology/mondo.Makefile
@@ -1018,6 +1018,7 @@ deprecated_annotation_merging:
 	sed -i 's/source="MONDO:equivalentObsolete",\ source="MONDO:equivalentTo"/source="MONDO:equivalentObsolete"/g' mondo-edit.obo || true
 	sed -i 's/\(.*\)source="MONDO:equivalentObsolete"\(.*\)source="MONDO:obsoleteEquivalentObsolete"\(.*\)/\1source="MONDO:obsoleteEquivalentObsolete"\2\3/g' mondo-edit.obo || true
 	sed -i 's/, }/}/g' mondo-edit.obo || true
+	sed -i 's/, ,/,/g' mondo-edit.obo || true
 	echo "NOTE: There are still some broken cases that need to be manually fixed. Search for `quivalent.*quivalent` (no E) in case sensitive regex mode in Atom or Visual Studio"
 
 #ANNOTATION_PROPERTIES=rdfs:label IAO:0000115 IAO:0000116 IAO:0000111 oboInOwl:hasDbXref rdfs:comment