Repair zeroes in phenotype.hpoa, update PKS #595
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…primary_knowledge_source to push back one level so that it's omim/orphanet/decipher
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Updates koza to get has_count=0 coming out of HPOA d2p, also updates the primary_knowledge_source to consider HPO the aggregator and OMIM/Orphanet/Decipher the source.