diff --git a/scripts/load_solr.sh b/scripts/load_solr.sh index 1cd08883..b026858c 100755 --- a/scripts/load_solr.sh +++ b/scripts/load_solr.sh @@ -60,10 +60,12 @@ scripts/add_update_processor.sh # todo: this should probably happen after associations, but putting it first for testing echo "Loading SSSOM mappings" grep -v "^#" data/monarch/mondo.sssom.tsv > headless.mondo.sssom.tsv +grep -v "^#" data/monarch/gene_mappings.sssom.tsv > headless.gene_mappings.sssom.tsv +grep -v "^#" data/monarch/mesh_chebi_biomappings.sssom.tsv > headless.mesh_chebi_biomappings.sssom.tsv # todo: copy the mappings to output/mappings as part of an earlier step poetry run lsolr bulkload -C sssom -s model.yaml headless.mondo.sssom.tsv -poetry run lsolr bulkload -C sssom -s model.yaml data/monarch/gene_mappings.tsv -poetry run lsolr bulkload -C sssom -s model.yaml data/monarch/chebi-mesh.biomappings.sssom.tsv +poetry run lsolr bulkload -C sssom -s model.yaml headless.gene_mappings.sssom.tsv +poetry run lsolr bulkload -C sssom -s model.yaml headless.mesh_chebi_biomappings.sssom.tsv echo "Loading entities" poetry run lsolr bulkload -C entity -s model.yaml output/monarch-kg-denormalized-nodes.tsv