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Mismatch of coord systems between electrodes and channels/events #1082
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Hello! 👋 Thanks for opening your first issue here! ❤️ We will try to get back to you soon. 🚴🏽♂️ |
I think that's one for @sappelhoff to tackle 🤠 |
I think that's a classic case of "it was complicated and we only implemented what users needed at that time". I am afraid this will need a deep dive into the code base ... |
@laemtl technically I think we can do what we do but coordinate systems should be given in the sidecar files. Now I don't know if we do it properly. @laemtl can you share a folder with some data and a script to replicate / investigate and if possible use one of the mne demo datasets. We have some data in CTF format eg https://mne.tools/dev/auto_tutorials/io/60_ctf_bst_auditory.html |
Description of the problem
Channel//Epoch data are exported in the ALS coord space to follow the EEGLAB specs.
On the other hand, electrode data are exported in the head/captrak coord space.
Is there any reason to not export the electrode data in the same space?
Steps to reproduce
Link to data
No response
Expected results
Electrode data in the EEGLAB space
Actual results
Electrode data in the Captrak space
Additional information
Platform: Windows-10-10.0.19041-SP0
Python: 3.8.5 (tags/v3.8.5:580fbb0, Jul 20 2020, 15:57:54) [MSC v.1924 64 bit (AMD64)]
Executable: C:\Users\Lae\Documents\hbcd-eeg2bids\Scripts\python.exe
CPU: Intel64 Family 6 Model 142 Stepping 9, GenuineIntel: 4 cores
Memory: Unavailable (requires "psutil" package)
mne: 1.2.0
numpy: 1.20.3 {OpenBLAS 0.3.13.dev with 4 threads}
scipy: 1.9.2
matplotlib: 3.6.1 {backend=TkAgg}
sklearn: 1.1.2
numba: 0.56.2
nibabel: Not found
nilearn: Not found
dipy: Not found
openmeeg: Not found
cupy: Not found
pandas: 1.5.0
pyvista: Not found
pyvistaqt: Not found
ipyvtklink: Not found
vtk: Not found
qtpy: Not found
ipympl: Not found
pyqtgraph: Not found
pooch: v1.6.0
mne_bids: 0.10
mne_nirs: Not found
mne_features: 0.2.1
mne_qt_browser: Not found
mne_connectivity: Not found
mne_icalabel: Not found
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