simplified requirements

requirements.txt

@@ -1,146 +1,26 @@
-aiohttp==3.9.5
-aiosignal==1.3.1
-appnope==0.1.4; platform_system == "Darwin"
-asciitree==0.3.3
-asttokens==2.4.1
-async-timeout==4.0.3; python_version < "3.11"
-attrs==23.2.0
-black==24.4.2
-cartopy==0.23.0
-certifi==2024.2.2
-cffi==1.16.0; implementation_name == "pypy"
-cfgv==3.4.0
-charset-normalizer==3.3.2
-click==8.1.7
-cloudpickle==3.0.0
-codespell==2.2.6
-colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows"
-comm==0.2.2
-contourpy==1.2.1
-cycler==0.12.1
-dask==2024.5.0
-debugpy==1.8.1
-decorator==5.1.1
-dill==0.3.8
-distlib==0.3.8
-docker-pycreds==0.4.0
-exceptiongroup==1.2.1; python_version < "3.11"
-executing==2.0.1
-fasteners==0.19; sys_platform != "emscripten"
-filelock==3.14.0
-flake8==7.0.0
-fonttools==4.51.0
-frozenlist==1.4.1
-fsspec==2024.5.0
-gitdb==4.0.11
-gitpython==3.1.43
-identify==2.5.36
-idna==3.7
-importlib-metadata==7.1.0; python_version < "3.12"
-iniconfig==2.0.0
-intel-openmp==2021.4.0; platform_system == "Windows"
-ipdb==0.13.13
-ipykernel==6.29.4
-ipython==8.24.0
-isort==5.13.2
-jedi==0.19.1
-jinja2==3.1.4
-joblib==1.4.2
-jupyter-client==8.6.1
-jupyter-core==5.7.2
-kiwisolver==1.4.5
-lightning-utilities==0.11.2
-locket==1.0.0
-loguru==0.7.2
-markupsafe==2.1.5
-matplotlib==3.9.0
-matplotlib-inline==0.1.7
-mccabe==0.7.0
-mkl==2021.4.0; platform_system == "Windows"
-mpmath==1.3.0
-multidict==6.0.5
-mypy-extensions==1.0.0
-nest-asyncio==1.6.0
-networkx==3.3
-nodeenv==1.8.0
-numcodecs==0.12.1
-numpy==1.26.4
-nvidia-cublas-cu12==12.1.3.1; platform_system == "Linux" and platform_machine == "x86_64"
-nvidia-cuda-cupti-cu12==12.1.105; platform_system == "Linux" and platform_machine == "x86_64"
-nvidia-cuda-nvrtc-cu12==12.1.105; platform_system == "Linux" and platform_machine == "x86_64"
-nvidia-cuda-runtime-cu12==12.1.105; platform_system == "Linux" and platform_machine == "x86_64"
-nvidia-cudnn-cu12==8.9.2.26; platform_system == "Linux" and platform_machine == "x86_64"
-nvidia-cufft-cu12==11.0.2.54; platform_system == "Linux" and platform_machine == "x86_64"
-nvidia-curand-cu12==10.3.2.106; platform_system == "Linux" and platform_machine == "x86_64"
-nvidia-cusolver-cu12==11.4.5.107; platform_system == "Linux" and platform_machine == "x86_64"
-nvidia-cusparse-cu12==12.1.0.106; platform_system == "Linux" and platform_machine == "x86_64"
-nvidia-nccl-cu12==2.20.5; platform_system == "Linux" and platform_machine == "x86_64"
-nvidia-nvjitlink-cu12==12.4.127; platform_system == "Linux" and platform_machine == "x86_64"
-nvidia-nvtx-cu12==12.1.105; platform_system == "Linux" and platform_machine == "x86_64"
-packaging==24.0
-pandas==2.2.2
-parso==0.8.4
-partd==1.4.2
-pathspec==0.12.1
-pexpect==4.9.0; sys_platform != "win32" and sys_platform != "emscripten"
-pillow==10.3.0
-platformdirs==4.2.2
-plotly==5.22.0
-pluggy==1.5.0
-pre-commit==3.7.1
-prompt-toolkit==3.0.43
-protobuf==4.25.3; python_version > "3.9" or sys_platform != "linux"
-psutil==5.9.8
-ptyprocess==0.7.0; sys_platform != "win32" and sys_platform != "emscripten"
-pure-eval==0.2.2
-pycodestyle==2.11.1
-pycparser==2.22; implementation_name == "pypy"
-pyflakes==3.2.0
-pygments==2.18.0
-pylint==3.2.0
-pyparsing==3.1.2
-pyproj==3.6.1
-pyshp==2.3.1
-pytest==8.2.0
-python-dateutil==2.9.0.post0
-pytorch-lightning==2.2.4
-pytz==2024.1
-pywin32==306; sys_platform == "win32" and platform_python_implementation != "PyPy"
-pyyaml==6.0.1
-pyzmq==26.0.3
-requests==2.31.0
-scikit-learn==1.4.2
-scipy==1.13.0
-sentry-sdk==2.2.0
-setproctitle==1.3.3
-setuptools==69.5.1
-shapely==2.0.4
-six==1.16.0
-smmap==5.0.1
-stack-data==0.6.3
-sympy==1.12
-tbb==2021.12.0; platform_system == "Windows"
-tenacity==8.3.0
-threadpoolctl==3.5.0
-tomli==2.0.1; python_version < "3.11"
-tomlkit==0.12.5
-toolz==0.12.1
-torch==2.3.0
-torch-geometric==2.5.3
-torchmetrics==1.4.0.post0
-tornado==6.4
-tqdm==4.66.4
-traitlets==5.14.3
-triton==2.3.0; platform_system == "Linux" and platform_machine == "x86_64" and python_version < "3.12"
-tueplots==0.0.15
-typing-extensions==4.11.0
-tzdata==2024.1
-urllib3==2.2.1
-virtualenv==20.26.2
-wandb==0.17.0
-wcwidth==0.2.13
-win32-setctime==1.1.0; sys_platform == "win32"
-xarray==2024.5.0
-yarl==1.9.4
-zarr==2.18.0
-zipp==3.18.2; python_version < "3.12"
+# for all
+numpy>=1.24.2
+wandb>=0.13.10
+matplotlib>=3.7.0
+scipy>=1.10.0
+pytorch-lightning>=2.0.3
+shapely>=2.0.1
+networkx>=3.0
+Cartopy>=0.22.0
+pyproj>=3.4.1
+tueplots>=0.0.8
+plotly>=5.15.0
+torch-geometric>=2.5.2,
+loguru>=0.7.2,
+xarray>=2024.3.0,
+zarr>=2.17.2,
+dask>=2024.4.2,
+
+# for dev
+pre-commit>=2.15.0
+codespell>=2.0.0,
+black>=21.9b0,
+isort>=5.9.3,
+flake8>=4.0.1,
+pylint>=3.0.3,
+pytest>=8.1.1,