Prediction of bacteria-phage interactions with machine learning methods

This repository contains the code I wrote for my Bachelor's degree dissertation project.

The dissertation's title was: Application of machine learning methods for predicting bacteriophage-host interactions.

NB. this repo contains 'working code' - it may not be as clean as possible.

Name		Name	Last commit message	Last commit date
Latest commit History 57 Commits
features		features
taxonomy		taxonomy
ANNs.ipynb		ANNs.ipynb
DNNs.ipynb		DNNs.ipynb
README.md		README.md
feature_exploration.ipynb		feature_exploration.ipynb
hyperparameter_tuning.ipynb		hyperparameter_tuning.ipynb
master_functions.py		master_functions.py
models_comparison.ipynb		models_comparison.ipynb
prep_main_df.ipynb		prep_main_df.ipynb
r_forest.ipynb		r_forest.ipynb
r_forest_cv.ipynb		r_forest_cv.ipynb
sampling_methods.ipynb		sampling_methods.ipynb
shap.ipynb		shap.ipynb

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