From 6a12dc8c8cd17965f95fff68d423b15f9ca3a30f Mon Sep 17 00:00:00 2001
From: Saurabh Mogre <saurabh.mogre@alleninstitute.org>
Date: Wed, 8 May 2024 13:57:34 -0700
Subject: [PATCH] format

---
 cellpack/autopack/Analysis.py  | 11 ++++-------
 cellpack/autopack/MeshStore.py |  4 ++--
 2 files changed, 6 insertions(+), 9 deletions(-)

diff --git a/cellpack/autopack/Analysis.py b/cellpack/autopack/Analysis.py
index f72d4f25..0b5b22bf 100644
--- a/cellpack/autopack/Analysis.py
+++ b/cellpack/autopack/Analysis.py
@@ -777,10 +777,7 @@ def add_ingredient_positions_to_plot(
                 )
                 # plot the sphere
                 if ingr.use_rbsphere:
-                    (
-                        ext_recipe,
-                        pts,
-                    ) = ingr.getInterpolatedSphere(
+                    (ext_recipe, pts,) = ingr.getInterpolatedSphere(
                         seed_ingredient_positions[-i - 1],
                         seed_ingredient_positions[-i],
                     )
@@ -874,9 +871,9 @@ def update_pairwise_distances(
                 ingr.name,
                 ingr2.name,
             ):
-                pairwise_distance_dict[seed_index][f"{ingr.name}_{ingr2.name}"] = (
-                    self.env.calc_pairwise_distances(ingr.name, ingr2.name).tolist()
-                )
+                pairwise_distance_dict[seed_index][
+                    f"{ingr.name}_{ingr2.name}"
+                ] = self.env.calc_pairwise_distances(ingr.name, ingr2.name).tolist()
 
         return pairwise_distance_dict
 
diff --git a/cellpack/autopack/MeshStore.py b/cellpack/autopack/MeshStore.py
index 781770e4..17b549f4 100644
--- a/cellpack/autopack/MeshStore.py
+++ b/cellpack/autopack/MeshStore.py
@@ -268,8 +268,8 @@ def contains_points_mesh(self, geomname, points):
             else:
                 # chunk the points
                 for i in range(0, len(points), CHUNK_SIZE):
-                    chunk = points[i: i + CHUNK_SIZE]
-                    inside[i: i + CHUNK_SIZE] = mesh.contains(chunk)
+                    chunk = points[i : i + CHUNK_SIZE]
+                    inside[i : i + CHUNK_SIZE] = mesh.contains(chunk)
                 return inside
         return inside