autopack_recipe.xml

<?xml version="1.0" encoding="UTF-8"?>
<AF_recipe>
    <recipe name="BloodSerum" version="1.0">
        <setupfile>$autoPACKserver/data/BloodSerum/recipe/BloodSerum_setup_recipe.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/BloodSerum</wrkdir>
        <resultfile>autoPACKserver/data/BloodSerum/results/BloodSerumfillResult.apr</resultfile>
    </recipe>
    <recipe name="HIV" version="1.0">
        <setupfile>autoFillRecipeScripts/HIV/figureHiv3.5mesh2.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/HIV</wrkdir>
        <resultfile>http://grahamj.com/autofill/autoFillData/HIV/HIV_resultFiles/HIVresult_1_0.apr</resultfile>
    </recipe>
    <recipe name="HIV" version="1.1">
        <setupfile>autoFillRecipeScripts/HIV/HIV_recipe_setup_1_1.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/HIV</wrkdir>
        <resultfile>http://grahamj.com/autofill/autoFillData/HIV/HIV_resultFiles/HIVresult_1_1.apr</resultfile>
    </recipe>
    
    <recipe name="HIV" version="1.2">
        <setupfile>autoPACKserver/data/HIV/recipe/HIV_recipe_setup_1_2.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/HIV</wrkdir>
        <resultfile>autoPACKserver/data/HIV/results/HIVresult_1_2.apr</resultfile>
    </recipe>
    
    <recipe name="HIV" version="1.3">
        <setupfile>autoPACKserver/data/HIV/recipe/HIV_recipe_setup_1_3.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/HIV</wrkdir>
        <resultfile>autoPACKserver/data/HIV/results/HIVresult_1_3.apr</resultfile>
    </recipe>
    
    <recipe name="HIV" version="1.4">
        <setupfile>autoPACKserver/data/HIV/recipe/HIV_recipe_setup_1_4.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/HIV</wrkdir>
        <resultfile>autoPACKserver/data/HIV/results/HIVresult_1_4.apr</resultfile>
    </recipe>
    
    <recipe name="Lipids" version="0.0">
        <setupfile>autoPACKserver/data/Lipids/recipe/Lipids0.0.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/Lipids</wrkdir>
        <resultfile>autoPACKserver/data/HIV/results/HIV_1.3-1.4_LipidBilayerfrom1.2_Test.apr</resultfile>
    </recipe>
    
    <recipe name="HIVLipids" version="0.1">
        <setupfile>autoPACKserver/data/HIVLipids/recipe/HIVLipids0.1.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/Lipids</wrkdir>
        <resultfile>autoPACKserver/data/HIV/results/HIV_1.3-1.4_LipidBilayerfrom1.2_Test.apr</resultfile>
    </recipe>
    
    <recipe name="HIVBloodSerum" version="1.0">
        <setupfile>autoPACKserver/data/HIVBloodSerum/recipe/HIVBloodSerum_recipe_setup_1_0.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/HIVBloodSerum</wrkdir>
        <resultfile>autoPACKserver/data/HIVBloodSerum/results/HIVBloodSerum_1_0.apr</resultfile>
    </recipe>
    <recipe name="HIVBloodSerum" version="1.1">
        <setupfile>autoPACKserver/data/HIVBloodSerum/recipe/HIVBloodSerum_recipe_setup_1_1.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/HIVBloodSerum</wrkdir>
        <resultfile>autoPACKserver/data/HIVBloodSerum/results/HIVBloodSerum_1_1.apr</resultfile>
    </recipe>
    <recipe name="HIVBloodSerum" version="1.2">
        <setupfile>autoPACKserver/data/HIVBloodSerum/recipe/HIVBloodSerum_recipe_setup_1_2.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/HIVBloodSerum</wrkdir>
        <resultfile>autoPACKserver/data/HIVBloodSerum/results/HIVBloodSerum_1_2.apr</resultfile>
    </recipe>    
    <recipe name="Test_CylindersSpheres2D" version="1.0">
      <setupfile>autoPACKserver/data/2DcylinderSphereFill/recipe/2DCylindersSpheres_setup_recipe.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/2DcylinderSphereFill</wrkdir>
        <resultfile>autoPACKserver/data/2DcylinderSphereFill/results/CylSpherefillResult.apr</resultfile>
    </recipe>
    <recipe name="Test_Cubes2D" version="1.0">
        <setupfile>autoPACKserver/data/Test_Cubes2D/recipe/2DCubes_setup_recipe.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/Test_Cubes2D</wrkdir>
        <resultfile>autoPACKserver/data/Test_Cubes2D/results/CubesResult.apr</resultfile>
    </recipe>
    <recipe name="GenericCytoplasm" version="1.0">
        <setupfile>autoFillRecipeScripts/GenericCytoplasm/GenericCytoplasm_setup_recipe.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/GenericCytoplasm</wrkdir>
        <resultfile>autoFillRecipeScripts/GenericCytoplasm/results/GenericCytoplasmfillResult.apr</resultfile>
    </recipe>
    <recipe name="GenericCytoplasm" version="1.1">
        <setupfile>autoPACKserver/data/GenericCytoplasm/recipe/GenericCytoplasm_setup_recipe.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/GenericCytoplasm</wrkdir>
        <resultfile>http://mgldev.scripps.edu/projects/AF/datas/GenericCytoplasm/results/GenericCytoplasmPACKResult.apr</resultfile>
    </recipe>
    <recipe name="GeometricCellScape" version="1.0">
       <setupfile>autoPACKserver/data/GeometricCellScape/recipe/GeometricCellScape_setup_recipe.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/GeometricCellScape</wrkdir>
        <resultfile>autoPACKserver/data/GeometricCellScape/results/GeometricCellScapeResult.apr</resultfile>
    </recipe>
    <recipe name="Test_Spheres2Dgradients" version="1.0">
      <setupfile>autoPACKserver/data/Test_Spheres2Dgradients/recipe/2DSpheresGradients_setup_recipe.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/2DsphereFill</wrkdir>
        <resultfile>autoPACKserver/data/Test_Spheres2Dgradients/results/SphereGradientResult.apr</resultfile>
    </recipe>
    <recipe name="Test_Spheres2Dgradients" version="1.1">
      <setupfile>autoPACKserver/data/Test_Spheres2Dgradients/recipe/Test_Spheres2DGradients1.0.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/2DsphereFill</wrkdir>
        <resultfile>autoPACKserver/data/Test_Spheres2Dgradients/results/SphereGradientResult.apr</resultfile>
    </recipe>
    <!--recipe name="Test_Spheres2Ddebug" version="1.0">
        <setupfile>autoFillRecipeScripts/2DsphereFill/2DSpheres_setup_recipeDebug.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/2DsphereFill</wrkdir>
        <resultfile>autoFillRecipeScripts/2DsphereFill/results/SpherefillDebugResult.apr.txt</resultfile>
    </recipe-->
    <recipe name="Test_Spheres2D" version="1.0">
      <setupfile>autoPACKserver/data/Test_Spheres2D/recipe/2DSpheres_setup_recipe.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/2DsphereFill</wrkdir>
        <resultfile>autoPACKserver/data/Test_Spheres2D/results/SpherefillResult.apr</resultfile>
    </recipe>
    <recipe name="Test_Spheres2D" version="1.1">
      <setupfile>autoPACKserver/data/Test_Spheres2D/recipe/Test_Spheres2D1.1.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/2DsphereFill</wrkdir>
        <resultfile>autoPACKserver/data/Test_Spheres2D/results/SpherefillResult.apr</resultfile>
    </recipe>
    <recipe name="Mycoplasma" version="1.0">
        <setupfile>autoPACKserver/data/Mycoplasma/recipe/Mycoplasma1.0.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/Mycoplasma</wrkdir>
        <resultfile>autoPACKserver/data/Mycoplasma/results/MycoplasmaPackResult.json</resultfile>
    </recipe>
    <recipe name="Mycoplasma" version="1.1">
        <setupfile>autoPACKserver/data/Mycoplasma/recipe/Mycoplasma1.1.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/Mycoplasma</wrkdir>
        <resultfile>autoPACKserver/data/Mycoplasma/results/MycoplasmaPackResult_2.json</resultfile>
    </recipe>
    <recipe name="Mycoplasma" version="1.2">
        <setupfile>autoPACKserver/data/Mycoplasma/recipe/Mycoplasma1.2.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/Mycoplasma</wrkdir>
        <resultfile>autoPACKserver/data/Mycoplasma/results/MycoplasmaPackResult_3.json</resultfile>
    </recipe>
    <recipe name="planeWave" version="1.0">
        <setupfile>autoPACKserver/data/planeWave/planeWave1.0.xml</setupfile>
        <wrkdir>autoFillRecipeScripts/planeWave</wrkdir>
        <resultfile>autoPACKserver/data/planeWave/results/planeWave.apr.json</resultfile>
    </recipe>    
</AF_recipe>