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Read counts in covplot is overestimated #37

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ozagordi opened this issue Apr 25, 2018 · 0 comments
Open

Read counts in covplot is overestimated #37

ozagordi opened this issue Apr 25, 2018 · 0 comments

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@ozagordi
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covplot reports number of reads from samtools idxstats that counts the number of alignments, not the number of reads. For genomes with repetitive regions, this leads to overestimate the read counts.
@ozagordi ozagordi self-assigned this Apr 25, 2018
@ozagordi ozagordi removed their assignment Feb 13, 2019
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@ozagordi