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Data Management System

This repo hosts a collection of connected scripts, programs, templates, and documents concerning the data management practices to follow at IMV for HTS data (high throughput sequencing data). More info can be found on the Wiki page.

Metadata model

metadata_model.md

Backup scripts in use at the moment (15.02.2017)

backup2nc.sh and backup_script.sh

Scripts for openBIS

SampleSheet2openBIS.sh Convert MiSeq SampleSheet into properties file together with raw fastq reads in separate directories for import into openBIS.