From 925b2a8d79e4527617e4adc951625df24145897f Mon Sep 17 00:00:00 2001 From: Kiran V Garimella Date: Fri, 1 Sep 2017 01:17:07 +0100 Subject: [PATCH] Two short contigs, indexed and with sequence dictionary, to facilitate testing --- tests/two_short_contigs.fa | 4 ++++ tests/two_short_contigs.fa.dict | 3 +++ tests/two_short_contigs.fa.fai | 2 ++ 3 files changed, 9 insertions(+) create mode 100644 tests/two_short_contigs.fa create mode 100644 tests/two_short_contigs.fa.dict create mode 100644 tests/two_short_contigs.fa.fai diff --git a/tests/two_short_contigs.fa b/tests/two_short_contigs.fa new file mode 100644 index 00000000..2d9f7884 --- /dev/null +++ b/tests/two_short_contigs.fa @@ -0,0 +1,4 @@ +>1 +TTCTGTATCGTATGCTCTGAATAAAAATCGTGGCCCTATTTCGTATAGT +>2 +GGGCCGCGCCTATTATGGGCTTCTCTCTGAGTACTGGTCATGTAGTTGCTGTAGTCGTAGTGTCGTGGCCCCCCAGT diff --git a/tests/two_short_contigs.fa.dict b/tests/two_short_contigs.fa.dict new file mode 100644 index 00000000..08a5a088 --- /dev/null +++ b/tests/two_short_contigs.fa.dict @@ -0,0 +1,3 @@ +@HD VN:1.0 SO:unsorted +@SQ SN:1 LN:49 M5:21ca4bb1bef83008283ee8004e655108 UR:file:///Users/kiran/repositories/INDIANA/tests/two_short_contigs.fa +@SQ SN:2 LN:77 M5:9d7185f45ffaa0cff06179aaacd77435 UR:file:///Users/kiran/repositories/INDIANA/tests/two_short_contigs.fa diff --git a/tests/two_short_contigs.fa.fai b/tests/two_short_contigs.fa.fai new file mode 100644 index 00000000..eee8650f --- /dev/null +++ b/tests/two_short_contigs.fa.fai @@ -0,0 +1,2 @@ +1 49 3 49 50 +2 77 56 77 78