WHGDCA_ES

Within-Host Genomic Diversity of Candida albicans in Healthy Carriers: Implication for Microevolution Studies

Running the test dataset

python src/snp_add_heterozygous_info.py -i data/snp_matrix.txt -o data/snp_matrix.withHTZ.txt
python src/snp_extract_microLOH.py -i data/snp_matrix.withHTZ.txt -o data/microLOH.txt

Prerequisites

Python (2.7)

Authors

Corinne Maufrais Bioinformatics and Biostatistics Hub C3BI - Institut Pasteur Paris, France