diff --git a/README.md b/README.md index cff6a3692..23ed163d6 100644 --- a/README.md +++ b/README.md @@ -46,6 +46,23 @@ pip install -r requirements_notorch.txt conda install tensorboard ``` +#### Download PACS + +step 1: + +use the following script to download PACS to your local laptop and upload it to your cluster + +https://github.com/marrlab/DomainLab/blob/fbopt/data/script/download_pacs.py + +step 2: +make a symbolic link following the example script in https://github.com/marrlab/DomainLab/blob/master/sh_pacs.sh + +where `mkdir -p data/pacs` is executed under the repository directory, + +`ln -s /dir/to/yourdata/pacs/raw ./data/pacs/PACS` +will create a symbolic link under the repository directory + + #### Windows installation details To install DomainLab on Windows, please remove the `snakemake` dependency from the `requirements.txt` file.