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SSSOM py should fail hard when a mapping is not parsed in strict mode #550

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matentzn opened this issue Jul 4, 2024 · 0 comments

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matentzn commented Jul 4, 2024

Context:

The original dataclass parser catches this:

WARNING:sssom.parsers:One mapping in the mapping set is not well-formed, and therfore not included in the mapping set ({'subject_id': 'NANDO:2200355', 'subject_label': 'Isolated ACTH deficiency', 'predicate_id': 'skos:exactMatch', 'object_id': 'MONDO:0008720|MONDO:0016042', 'mapping_justification': 'semapv:MappingCuration'}). Error: MONDO:0008720|MONDO:0016042 is not a valid URI or CURIE

Originally posted by @matentzn in #532 (comment)

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