Refactor ROI Handling: removed rename_roi and remove_roi from Model #7813
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name: Testing with conda | |
on: | |
push: | |
branches: | |
- 'main' | |
- 'release-*' | |
pull_request: | |
paths: | |
- '**' | |
- '!docs/**' | |
release: | |
merge_group: | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
test: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
# Needed to get tags so that git describe works during package build | |
fetch-depth: "0" | |
- name: Get Date | |
id: get-date | |
run: | | |
echo "date=$(/bin/date -u "+%Y%V")" >> $GITHUB_OUTPUT | |
shell: bash | |
- name: Cache Miniforge and Pip packages | |
uses: actions/cache@v4 | |
env: | |
CACHE_NUMBER: 0 | |
with: | |
path: | | |
~/conda_pkgs_dir | |
~/.cache/pip | |
key: | |
${{runner.os}}-condapkg-${{env.CACHE_NUMBER}}-${{steps.get-date.outputs.date}}-${{hashFiles('environment-dev.yml','conda/meta.yaml')}} | |
- name: Cache Miniforge environment | |
uses: actions/cache@v4 | |
id: cache-miniforge-environment | |
env: | |
CACHE_NUMBER: 0 | |
with: | |
path: ${CONDA}/envs/mantidimaging-dev.cache | |
key: | |
${{runner.os}}-condaenv-${{env.CACHE_NUMBER}}-${{steps.get-date.outputs.date}}-${{hashFiles('environment-dev.yml','conda/meta.yaml', 'setup.py')}} | |
- name: Setup Miniforge | |
uses: conda-incubator/setup-miniconda@v3 | |
with: | |
miniforge-version: latest | |
activate-environment: mantidimaging-dev | |
auto-activate-base: false | |
use-mamba: true | |
- name: Mantid Imaging developer dependencies | |
if: steps.cache-miniforge-environment.outputs.cache-hit != 'true' | |
shell: bash -l {0} | |
run: | | |
conda deactivate | |
python3 ./setup.py create_dev_env | |
cp -Ta ${CONDA}/envs/mantidimaging-dev ${CONDA}/envs/mantidimaging-dev.cache | |
- name: Mantid Imaging developer dependencies - from cache | |
if: steps.cache-miniforge-environment.outputs.cache-hit == 'true' | |
shell: bash -l {0} | |
run: | | |
cp -Ta ${CONDA}/envs/mantidimaging-dev.cache ${CONDA}/envs/mantidimaging-dev | |
- name: Other dependencies | |
shell: bash -l {0} | |
run: | | |
sudo apt update -y | |
sudo apt-get install -y xvfb libxcb* libxkb* | |
- name: List versions | |
shell: bash -l {0} | |
run: | | |
mamba env list | |
python --version; mamba list ; pip list | |
- name: Yapf | |
shell: bash -l {0} | |
run: | | |
yapf --parallel --diff --recursive . | |
- name: Ruff | |
shell: bash -l {0} | |
run: | | |
ruff check . | |
- name: mypy | |
shell: bash -l {0} | |
run: | | |
mypy --ignore-missing-imports mantidimaging | |
- name: pyright | |
shell: bash -l {0} | |
run: | | |
pyright mantidimaging | |
- name: pytest | |
timeout-minutes: 10 | |
shell: bash -l {0} | |
run: | | |
xvfb-run --auto-servernum python -m pytest --cov --cov-report=xml -n auto --maxprocesses=4 --dist loadgroup -o log_cli=true --ignore=mantidimaging/eyes_tests --durations=10 | |
- name: Get test data | |
shell: bash -l {0} | |
run: | | |
wget -nv https://github.com/mantidproject/mantidimaging-data/archive/refs/tags/small.zip | |
unzip -q small.zip -d ~ | |
mv ~/mantidimaging-data-small ~/mantidimaging-data | |
timeout-minutes: 5 | |
- name: GUI Tests System | |
shell: bash -l {0} | |
run: | | |
xvfb-run --auto-servernum /bin/time -v python -m pytest -vs -rs -p no:xdist -p no:randomly -p no:repeat -p no:cov -o log_cli=true --run-system-tests --durations=10 | |
timeout-minutes: 30 | |
- name: GUI Tests Screenshots Applitools | |
if: github.event_name == 'pull_request' | |
shell: bash -l {0} | |
env: | |
APPLITOOLS_API_KEY: ${{ secrets.APPLITOOLS_API_KEY }} | |
APPLITOOLS_BATCH_ID: ${{ github.sha }} | |
GITHUB_BRANCH_NAME: ${{ github.head_ref }} | |
run: | | |
xvfb-run --auto-servernum /bin/time -v python -m pytest -vs -rs -p no:xdist -p no:randomly -p no:repeat -p no:cov -o log_cli=true mantidimaging/eyes_tests --run-eyes-tests --durations=10 | |
timeout-minutes: 15 | |
- name: Coveralls | |
shell: bash -l {0} | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
run: | | |
coveralls --service=github | |
# Always label as unstable. Builds of stable releases can be manually labeled to 'main' once tested | |
- name: publish 'unstable' package | |
if: github.event_name == 'release' || (github.event_name == 'push' && (github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/release'))) | |
uses: ./.github/actions/publish-package | |
with: | |
label: unstable | |
token: ${{ secrets.ANACONDA_API_TOKEN_MANTIDIMAGING }} | |
token-old: ${{ secrets.ANACONDA_API_TOKEN }} |