diff --git a/pages/nci_gadi.md b/pages/nci_gadi.md index f0cb6bf..0b9413c 100644 --- a/pages/nci_gadi.md +++ b/pages/nci_gadi.md @@ -4,7 +4,23 @@ contributors: description: affiliations: --- +## Access to Biocommons Tower +## Access to HPC +## Create Personal Access Token +Step to be done in: Nextflow Tower +Environments requiring this step: Lyra, Gadi and Setonix +You will need the authentication token for running Tower Agent (Gadi, Setonix) and to direct monitoring of the pipeline to Nextflow Tower (Lyra). The authentication token can be created in `Your tokens` section of your profile. More information on the authentication can be found in the Nextflow Tower documentation: [Authentication section (Seqera)](https://help.tower.nf/23.2/api/overview/#authentication) and [Create Personal Token section (Australian BioCommons)](https://docs.google.com/document/d/1DZ-dsaDjiM8bVo4VifPAXP7Nah7V7mHlluijb3KYj8E/edit#heading=h.ar0302xrqom4). + +### Add Credentials for Tower Agent +### Add Credentials for GitHub +### Add a Compute Environment +### Add a pipeline + + + +## Useful links +## Submit scripts to PBS ## Directly on the HPC ### Download databases @@ -41,20 +57,4 @@ qsub download_blastdb.pbs #### VirDB ### Download the pipeline and singularity images (if you are planning to use a queue that does not have network connection) - Run Tower Agent - -## In GitHub - - -## In Nextflow Tower -### Create a Personal Access Token -### Add Credentials for Tower Agent -### Add Credentials for GitHub -### Add a Compute Environment -### Add a pipeline - - - -## Useful links -## Submit scripts to PBS - +## Run Tower Agent