From b7d93834377c14b17eed41e37cdc48555e5055d6 Mon Sep 17 00:00:00 2001
From: mantczakaus <49752271+mantczakaus@users.noreply.github.com>
Date: Wed, 22 Nov 2023 11:21:42 +1000
Subject: [PATCH] Update and rename nci_gadi.md to how_to_setup.md
---
pages/{nci_gadi.md => how_to_setup.md} | 23 +++++------------------
1 file changed, 5 insertions(+), 18 deletions(-)
rename pages/{nci_gadi.md => how_to_setup.md} (87%)
diff --git a/pages/nci_gadi.md b/pages/how_to_setup.md
similarity index 87%
rename from pages/nci_gadi.md
rename to pages/how_to_setup.md
index edb9524..a0bac23 100644
--- a/pages/nci_gadi.md
+++ b/pages/how_to_setup.md
@@ -7,29 +7,16 @@ description:
## Access to HPC
## Create Personal Access Token
-
-
- Lyra, Gadi and Setonix (Nextflow Tower)
-
+#### Lyra, Gadi and Setonix (Nextflow Tower)
You will need the authentication token for running Tower Agent (Gadi, Setonix) and to direct monitoring of the pipeline to Nextflow Tower (Lyra). The authentication token can be created in `Your tokens` section of your profile in Nextflow Tower.
![Token](./images/token.png)
More information on the authentication can be found in the Nextflow Tower documentation: [Authentication (Seqera)](https://help.tower.nf/23.2/api/overview/#authentication) and [Create Personal Token (Australian BioCommons)](https://docs.google.com/document/d/1DZ-dsaDjiM8bVo4VifPAXP7Nah7V7mHlluijb3KYj8E/edit#heading=h.ar0302xrqom4).
-
-### Add Credentials for Tower Agent
-
-
- Gadi and Setonix (Nextflow Tower)
-
-
-
-
-
- Lyra
-
- You are only allowed to monitor jobs using Nextflow Tower on Lyra and that does not require running the Tower Agent.
-
+## Add Credentials for Tower Agent
+#### Gadi and Setonix (Nextflow Tower)
+#### Lyra
+You are only allowed to monitor jobs using Nextflow Tower on Lyra and that does not require running the Tower Agent.