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Segmentation fault when installing packages #2912

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jerryc05 opened this issue Oct 14, 2023 · 4 comments · May be fixed by #3337
Open
2 tasks done

Segmentation fault when installing packages #2912

jerryc05 opened this issue Oct 14, 2023 · 4 comments · May be fixed by #3337
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type::bug Something isn't working

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@jerryc05
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jerryc05 commented Oct 14, 2023 •
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Troubleshooting docs

  • My problem is not solved in the Troubleshooting docs

How did you install Mamba?

Mambaforge

Search tried in issue tracker

segmentation fault

Latest version of Mamba

  • My problem is not solved with the latest version

Tried in Conda?

I have this problem with Conda as well, without using Mamba

Describe your issue

Ran into segmentation fault when conda install pytorch3d

mamba info / micromamba info

libmamba version : 1.5.1
     micromamba version : 1.5.1
           curl version : libcurl/7.88.1 OpenSSL/3.1.2 zlib/1.2.13 zstd/1.5.5 libssh2/1.11.0 nghttp2/1.52.0
     libarchive version : libarchive 3.6.2 zlib/1.2.13 bz2lib/1.0.8 libzstd/1.5.2
       envs directories : /home/***/micromamba/envs
          package cache : /home/***/micromamba/pkgs
                          /home/***/.mamba/pkgs
            environment : test (active)
           env location : /home/***/micromamba/envs/test
      user config files : /home/***/.mambarc
 populated config files : /home/***/.condarc
       virtual packages : __unix=0=0
                          __linux=5.15.90=0
                          __glibc=2.35=0
                          __archspec=1=x86_64
                          __cuda=12.2=0
               channels : https://conda.anaconda.org/pytorch3d/linux-64
                          https://conda.anaconda.org/pytorch3d/noarch
                          https://conda.anaconda.org/nvidia/linux-64
                          https://conda.anaconda.org/nvidia/noarch
                          https://conda.anaconda.org/pytorch/linux-64
                          https://conda.anaconda.org/pytorch/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
       base environment : /home/***/micromamba
               platform : linux-64

Logs

Too long, does not fit into Github issues.

"There was an error creating your issue: body is too long (maximum is 65536 characters)."

https://pastebin.com/PgtbsN9g

environment.yml

N/A

~/.condarc

channels:
  - pytorch3d
  - nvidia
  - pytorch
  - pkgs/main

show_channel_urls: true
@jonashaag
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Looks like an infinite loop

@jonashaag jonashaag added the type::bug Something isn't working label Oct 14, 2023
@jonashaag
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Does it also happen if you do not use the anaconda default channels as documented in the troubleshooting guide?

@jerryc05
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Did not try. but it's worth noting that adding conda forge channel to ~/.condarc will "fix" this problem

@jonashaag
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Ok, the Anaconda channels are generally incompatible with most of the other channels so it's unlikely that anyone will work on fixing this bug.

pbrit added a commit to pbrit/mamba that referenced this issue Jul 3, 2024
@pbrit
WIP: check iterators boundary before ++
fd0e7dd 
  Fix mamba-org#2912
@pbrit pbrit linked a pull request Jul 3, 2024 that will close this issue
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WIP: check iterators boundary before ++ pbrit/mamba
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@jonashaag @jerryc05