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1. ADEPT ADEPT Public

   ADEPT: Autoencoder with Differentially Expressed Genes and Imputation for a Robust Spatial Transcriptomics Clustering

   Python 6 1

2. LRSV_combo LRSV_combo Public

   Long Read Based SV Calling Tools Analysis

   Python 11

3. MaskGraphene MaskGraphene Public

   Forked from OliiverHu/MaskGraphene

   MaskGraphene: Advancing joint embedding, clustering, and batch correction for spatial transcriptomics using graph-based self-supervised learning

   Python 1

4. VolcanoSV VolcanoSV Public

   VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing

   C++ 5

5. CNVeil CNVeil Public

   CNVeil enables accurate and robust tumor subclone identification and copy number estimation from single-cell DNA sequencing data

   Python 1

6. BenchmarkST BenchmarkST Public

   Benchmarking clustering, alignment, and integration methods for spatial transcriptomics

   Jupyter Notebook 9