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datasets format issues #5

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fighting-boy1 opened this issue Sep 21, 2024 · 0 comments
Open

datasets format issues #5

fighting-boy1 opened this issue Sep 21, 2024 · 0 comments

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@fighting-boy1
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Hi. Thanks for your great work! May I ask you a question?

run: ~/MAPS/scripts/CellSighter/cHL2_MIBI_training.py
error: As shown in the following picture.
**reason:**Data format problem?
**question:**Take cHL2_MIBI data as an example, according to the data download address given in the article, the data format is this: annotation_csv; raw_image; segmentation ~, but running CellSighter/cHL2_MIBI_training.py requires the data format to be this,Under the CellTypes directory:data; cells; cells2labels, how to solve or convert it?

thank you very much for your outstanding contribution!

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