Aligning new HE-Xenium data

[alesroger]

Sorry if I've overseen this, but a hint would be very helpful!
Do you provide sample code somewhere to align new Xenium data? In detail, I have unaligned HE WSI and Xenium data available. What's the easiest way to align these (and bring them to the HEST format) with your code?
Thank you!

[pauldoucet]

Hi @alesroger,
You can try with XeniumReader().auto_read(path) or with read().

Please make sure to pull the latest version of the hest lib, as we modified several things.

You can then save the HESTData object with save()

[alesroger]

thank you very much! i will follow up as soon as this works for me and can post the working code, but i cannot say when this will be the case.

close this issue if you wish!

[guillaumejaume]

feel free to re-open if needed