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q2_SCNIC in q2-amplicon-2024.2 #19

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ARW-UBT opened this issue Nov 21, 2024 · 0 comments
Open

q2_SCNIC in q2-amplicon-2024.2 #19

ARW-UBT opened this issue Nov 21, 2024 · 0 comments

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@ARW-UBT
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ARW-UBT commented Nov 21, 2024

Hello,
I am using q2_SCNIC in the q2-amplicon-2024.2 version and get the following FutureWarning:
I have posted this before; Do you expect that this will be a more severe issue in the near future?

Thak you for the SCNIC plugin to qiime2.
Best regards

(qiime2-amplicon-2024.2) [bt140047@btrvx179 Weig]$ qiime metadata tabulate \

--m-input-file od11_scnic_Weig_decontam_filt18_min1400_all/membership.qza
--o-visualization od11_scnic_Weig_decontam_filt18_min1400_all/membership.qzv \

/home/bt140047/mambaforge/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/q2_SCNIC/_format.py:57: FutureWarning: The squeeze argument has been deprecated and will be removed in a future version. Append .squeeze("columns") to the call to squeeze.

series = pd.read_table(self.path, header=None, squeeze=True, nrows=nrows, index_col=0)
/home/bt140047/mambaforge/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/q2_SCNIC/_format.py:57: FutureWarning: The squeeze argument has been deprecated and will be removed in a future version. Append .squeeze("columns") to the call to squeeze.

series = pd.read_table(self.path, header=None, squeeze=True, nrows=nrows, index_col=0)
/home/bt140047/mambaforge/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/q2_SCNIC/_format.py:57: FutureWarning: The squeeze argument has been deprecated and will be removed in a future version. Append .squeeze("columns") to the call to squeeze.

series = pd.read_table(self.path, header=None, squeeze=True, nrows=nrows, index_col=0)

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