[Errno 2] No such file or directory: 'fastspar': 'fastspar'

[samd1993]

I am able to install the q2 SCNIC plugin on qiime 2020.2
I am also able to do the first filtering step.
However, I am unable to do the next correlation step and get this error:

(qiime2-2020.2) [sdegregori@surfingmantis scnic]$   qiime SCNIC calculate-correlations \
>   --i-table data-filtered-scnic.qza \
>   --p-method sparcc \
>   --o-correlation-table correls.qza
Plugin error from SCNIC:

  [Errno 2] No such file or directory: 'fastspar': 'fastspar'

Debug info has been saved to /tmp/qiime2-q2cli-err-o352x4yp.log

I tried installing fastspar but it gets stuck in this environment solving loop.
I also tried installing it in its own environment which actually works but still get the error in the qiime environment which I guess makes sense.
Cheers,
Sam

[nandan75]

Hi All,

I am running this step --

module load anaconda3
conda activate qiime2-2019.10

qiime SCNIC calculate-correlations
--i-table filtered_table_LBM1_2-sparcc-filter.qza
--p-method sparcc
--o-correlation-table filtered_table_LBM1_2-sparcc-filter_correls.qza

And get an error --

Plugin error from SCNIC:

[Errno 2] No such file or directory: 'fastspar': 'fastspar'

Debug info has been saved to /tmp/pbs.5803566.pbsserver/qiime2-q2cli-err-5_66ddv9.log

I can see a similar error above without a solution. Can someone suggest what is to be done here?

regards,

Nandan

[emankhalaf]

I have the same issue!