From 469013c3fe2c7ae835524db223262721458eae09 Mon Sep 17 00:00:00 2001
From: Liam Fitzstevens <71883978+liamfitzstevens@users.noreply.github.com>
Date: Tue, 6 Jun 2023 11:18:08 +0200
Subject: [PATCH] Update README.md

Add missing trailing backslash to test code
---
 README.md | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index 3bf1bfc..1781e8f 100755
--- a/README.md
+++ b/README.md
@@ -58,7 +58,7 @@ Each step is executed by a single command.
         -l : optional, the length of flanking sequences (on the BLAST hit), default is 2000 bp. 
 
 **Example using the provided input data:**
-`./find_overlapping_regions.sh  -t Sample_input/Target_genomes -r Sample_input/Reference_genomes/ -o first_step_output/`
+`./find_overlapping_regions.sh  -t Sample_input/Target_genomes/ -r Sample_input/Reference_genomes/ -o first_step_output/`
 
 #### b.	Second command:
 **From the folder in which the SynTracker scripts are located, execute:**
@@ -87,4 +87,4 @@ Changes to simplify and solve file naming procedure, and solve BLAST error resul
 a. Added script "old_to_new_names.py": changes the file names in the target folder to "Sample.xxx", fasta headers to "contig.yyy", writes the changes to a table, and assigns all sequences to a single file. It is called from find_overlapping_regions.sh.  
 b. Modified "find_overlapping_regions.sh", to use "old_to_new_names.py" instead of sed command in step 1.  
 c. Modified "SynTracker.R" to read the table generated by "old_to_new_names.py" and change temporarily assigned sample names back to the original sample names (i.e., file names).  
-d. Changed "SynTracker_functions.R" to handle the new naming format.  
\ No newline at end of file
+d. Changed "SynTracker_functions.R" to handle the new naming format.