Updated pargen.utils.load_data to use LH5Iterator and field_mask to be more memory efficient #2137
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| name: pygama | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| push: | |
| branches: | |
| - main | |
| - "releases/**" | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| FORCE_COLOR: 3 | |
| TQDM_DISABLE: yes_please | |
| jobs: | |
| build-and-test: | |
| name: Test pygama with Python | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11"] | |
| os: [ubuntu-latest, macOS-13] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Get dependencies and install the package | |
| run: | | |
| python -m pip install --upgrade pip wheel setuptools | |
| python -m pip install --upgrade .[test] | |
| - name: Run unit tests | |
| run: | | |
| python -m pytest | |
| test-coverage: | |
| name: Calculate and upload test coverage | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 2 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Generate Report | |
| run: | | |
| python -m pip install --upgrade pip wheel setuptools | |
| python -m pip install --upgrade .[test] | |
| python -m pytest --cov=pygama --cov-report=xml | |
| - name: Upload Coverage to codecov.io | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| fail_ci_if_error: false | |
| test-docs: | |
| name: Build documentation | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Setup build environment | |
| run: | | |
| sudo apt-get install -y pandoc | |
| python -m pip install --upgrade pip wheel setuptools | |
| python -m pip install --upgrade .[all] | |
| - name: Build docs for current ref | |
| run: | | |
| cd docs | |
| make clean | |
| make |