pull_results_from_openmind.sh

#!/bin/bash

declare -a arr=(
"bead/20180328/registration"
)
#"bead/20180328/registration_20180520_170824"

#declare -a arr=(
#"bead/20170915/registration"
#"bead/20171011/registration"
#"bead/20180109/registration"
#"bead/20180227/registration"
#"bead/20180302/registration"
#"bead/20180319/registration"
#"fish/20171202/interpolate"
#"fish/20171221/interpolate"
#"fish/20180123/interpolate"
#"fish/20180227/vid1/interpolate"
#"fish/20180227/vid2/interpolate"
#"worm/20170720/interpolate"
#"worm/20171012/interpolate"
#"worm/20171114/registration"
#"worm/20171117/registration"
#"worm/20171215/interpolate"
#"worm/20180103/registration"
#)

if [[ $(hostname -s) = willis ]]; then
    echo 'this is willis'
    LPATH=/home/jkinney/Desktop/DDLFM
elif [[ $(hostname -s) = *Justins-Mac* ]]; then
    echo 'this is mac air'
    LPATH=/Users/justin/Desktop/DDLFM
else
    echo unknown
    exit
fi

#RPATH=jkinney@openmind.mit.edu:/om/scratch/Mon/jkinney
RPATH=jkinney@openmind.mit.edu:/om/user/jkinney/DLFM

for i in "${arr[@]}"; do
    echo "##"
    echo "## $i"
    echo "##"

    # split string at '/'
    DEST=$LPATH
    IFS='/' read -ra ADDR <<< "$i"
    for j in "${ADDR[@]}"; do
        DEST="$DEST/$j"
        # check if folders exist
        if [ ! -d "$DEST" ]; then
            echo ""
            echo $DEST
            echo 'Folder does not exist. Creating now.'
            mkdir $DEST
        fi
    done

    # pull results from openmind
    echo ""
    #rsync -av --delete --exclude '*.mat' --exclude '*.tif' $RPATH/$i/ $LPATH/$i/
    rsync -av --exclude '*.mat' --exclude '*.tif' $RPATH/$i/ $LPATH/$i/
    #rsync -av --delete --exclude '*.tif' $RPATH/$i/ $LPATH/$i/
    echo ""
    echo ""
done