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master_reg_bead_20180302.m
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master_reg_bead_20180302.m
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clear all;
close all;
%% load parameters
param = init_param();
%%
[~,hostname] = system('hostname')
param.hostname = strtrim(hostname);
setup_par
if ~isempty(strfind(param.hostname, 'Justins-Mac'))
param.ppath = '/Users/justin/Desktop/DDLFM';
addpath([param.ppath '/lotus-registration']);
param.ipath = [param.ppath '/bead/20180302'];
param.opath = param.ipath;
param.parallel = false;
elseif ~isempty(strfind(param.hostname, 'willis'))
param.ppath = '/home/jkinney/Desktop/DDLFM';
addpath([param.ppath '/lotus-registration']);
param.ipath = [param.ppath '/bead/20180302'];
param.opath = param.ipath;
param.parallel = false;
else
param.ppath = '/home/jkinney';
addpath([param.ppath '/lotus-registration']);
param.ipath = '/om/user/jkinney/DLFM/bead/20180302';
param.opath = param.ipath;
end
param.inputFilePath1 = [param.ipath '/horizontal/Reconstructed/'];
param.inputFilePath2 = [param.ipath '/vertical/Reconstructed/'];
%%
param.savePath = [param.opath '/registration/'];
param.voxel_x = 0.323; % um
param.voxel_y = 0.323; % um
param.voxel_z = 4.0; % um
param
param.inputFileName = {'Recon3D_1_high_Mono_N15.mat'};
register(param)
close all;
param.inputFileName = {'Recon3D_2_high_Mono_N15.mat'};
register(param)
close all;
param.inputFileName = {'Recon3D_3_high_Mono_N15.mat'};
register(param)
close all;
param.inputFileName = {'Recon3D_4_high_Mono_N15.mat'};
register(param)
close all;
param.inputFileName = {'Recon3D_1_low_Mono_N15.mat'};
register(param)
close all;
param.inputFileName = {'Recon3D_2_low_Mono_N15.mat'};
register(param)
close all;